Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCCCTCGTCTTTCAAGGAGTATTGCAAACATCTTTCCCTAAAAACTGCCTATCTTCTCCATTCCCCTTCTCATCGACTTAACTTCCTCTTCCAAGTAGTTGTTGGTTCCTCACGTGATTTATTTTTCTTTCTTCAATAACAATGGTGGTCTAACAAACTTCTTGGAGCCTTGAAATTCTGGATCTTAAGTATTTCGAGGCTTCGTCCTCTATGTATTGTTGATATGTAATGTTCTATACGCTTCATAATGATTTCTTTTTGACCTTTCAGTTGTGATTTTTTTAAATGATTCTGTTTGACAGGTGGAGAAGCTGGTTTTGATCAATGCTTGTGTGTATAGTAAATGCACCGGGCACCCTACAAAACTGCCGAATGTGGTAGCATATGCTGGGGTAAACCTCCATGGCATACAACTTAGTGATGCTAGTAATTATGATCCCATTTATTTTCTTGTAAATTGCAGTTACTATTTAGCAATTTTAAATTTATTTTGGAAGATTGATTTGACAGAGTCTACAACTTTTTAGCTTTTGCTCTTCTTAATAAAATTGTTTACGAAAAACTCCATGTTGAATGAAAAATTCTTTATGCGAGAAATACAAGCTATGCGCTATGATTTAAATGAGAAGACTAAGCTATGTGATAGCTATGTTACAAACATTATGCAAATGAAAACTTGAGTCTCTCGTGTTTCTAGTTTTCAACTATGTAATATTGATCATGACTATGCGATAACATGAGCTATGCGAGATAGCTACGCAAAAGGTTAGAACATCTCATCGCATATGTTGACATCTTAGGCGAGATGGTCAAATATGATGATGAGACATATTAAAGTCATGATCTTTATCACATGATTAAAAAGAATAAAATGTTTTATTACCATTTTAGCTTTTAATAAGTCAACATAACTCCTCCATAAATAAAAAAGGTTACAAATTGATTTCTCAAAATTAATTTCCAATGGTCTACTGATTCCCTCACACTATATATATACTTTCTTCATCATTTCATTATACGCGCGAGAAATTTTCATAAGCAAGAAAACTCTCTCAAAAACTTCTTCTTTTGAGTTTACCGAGTAATTGTGAGTGTTTATTTGAGTGTTGAGATTCCAATTGATTTCTGTGCAAAATCAATTGAAGAACAAAAGTTGTTTTATCCTGGAGACGACGGGGCAATAATTTTGTTTGCACAAAGGAGCAAGCCGTGAAACGTCTTCAAGAGAGTGTGATCCGCGACTCATCCATTTCTTAACCAATCTTTTGGTTTCTAGCTTTGCGATCTGACCATTTGGCGAGATAATTAGTAAGCGACTTGACTACGCAAGGAACGGTACATTAAGCGAGATAAAGGGCGAAGTGCAACAACAATTTTGAGACGTATCAATCTGCTGCAATGGTCGGATTATTTCATGGTGATTTGAGTTCCTCCGACCTCAATCGTCCTTTTCGCTTCGAAGGAGCAAATTTTCAGAGGTAGAAACAAAAGATGCTGTTTTTTCTTACTTTGAAGAAAGTGGCTACATTATGTATCTCTGAAGAGCAAAAAATCCCAGAGTCCAGTCCATCTAAGGAGCAAGTCAAAACTCATACGGCGTGGACAGAGACCAATTTTATATGTAATAATTTAATACTTAATGGTCTTACTGATGAGTTGTATGATTATTACAGCACAATGTCCATCGCGAAAGAAGTTTGGGATGTGTTACAAAAGAAGTATGACACTGAGGAAGCTAGATCCAAGAAGTATGTGGTAAGCCGATACTTGCATTATCAAATGATTGATGACAGATCAGTGGAGGCTCAATAGAATGAGATTCAGAAGAAAGCAGATGAGATCATAAGCGAAGGTATGCGGCTTGACAATCAATTTCAAGTTGCAGTTATTATTGATAAATTACCTCATCTGTGGAAGGATTTCAAAACTACTCTAAGGCACAAAACCAAGGAGTTCTCGCTGGAAAGTCTCATCACGTAATTAAGGATTGAGGAAGAGGCGAGAAGACATGACCAAAAGGAAGAGGTGAATGCAATTCCCAGAAAGAAGTCAATCGTAGTGCTGAAACCGGATCTGAAGCCTAAACAAAATAAAATGAAACACAGATCCAACAAGCAAAGCAATTAGCAAAGACCCCAGTCCAGAAGTACGATACAAATTGTTTGCTACAATTATAATAAGCTTGGATACTTAGCTAGGAATTGTAGAAATAGGAATCATCCTGCTGCACAGGCGAACCTGGTAGAAGATGAATATGTAGCCATGATTTTTGAAGTTAATGTCATAGGGGGGTCTGGAGGTTGGTGGCTAGACACAGGTGCTTATCGCCATGTCTGTCATGACCTTAGTTTATTTAGAAAGTATAATGAGATAAATGATAAGAATATCCTTCTAGGAGACCATCACATGACAAAGGTGGCAGGCATTGGAAAAGTAGAACTGAAATTCACATCTGGCAAAGTGCTTGTGTTGAAGAAAGTTCTTCATACGCTTGGAATTCGAAAGAATTTGGTCTTTGGATATCTGCTTTACAAAGCTGGCTTCTCGCAAACTATAGGGTCAAATTTATTTACTTTAACTAAGAACAATGCTTTTGTGGGAAATGGCTACAGGACAGAAGGCATGTCTAAACTAAATTTAGAAATGATAAGAATTTAA
mRNA sequence
ATGCTTCCCTCGTCTTTCAAGGAGTATTGCAAACATCTTTCCCTAAAAACTGCCTATCTTCTCCATTCCCCTTCTCATCGACTTAACTTCCTCTTCCAAGTGGAGAAGCTGGTTTTGATCAATGCTTGTGTGTATAGTAAATGCACCGGGCACCCTACAAAACTGCCGAATGTGGTAGCATATGCTGGGGAACGGTACATTAAGCGAGATAAAGGGCGAAGTGCAACAACAATTTTGAGACGTATCAATCTGCTGCAATGGTCGGATTATTTCATGAAAGTGGCTACATTATGTATCTCTGAAGAGCAAAAAATCCCAGAGTCCAGTCCATCTAAGGAGCAAGTCAAAACTCATACGGCGTGGACAGAGACCAATTTTATATGTAATAATTTAATACTTAATGGTCTTACTGATGAGTTGTATGATTATTACAGCACAATGTCCATCGCGAAAGAAGTTTGGGATGTGTTACAAAAGAAGTATGACACTGAGGAAGCTAGATCCAAGAAGTATGTGAATGAGATTCAGAAGAAAGCAGATGAGATCATAAGCGAAGGTATGCGGCTTGACAATCAATTTCAAGTTGCAGTTATTATTGATAAATTACCTCATCTGTGGAAGGATTTCAAAACTACTCTAAGGCACAAAACCAAGGAGTTCTCGCTGGAAAGTCTCATCACGAATTGTAGAAATAGGAATCATCCTGCTGCACAGGCGAACCTGGTAGAAGATGAATATGTAGCCATGATTTTTGAAGTTAATGTCATAGGGGGGTCTGGAGGTTGGTGGCTAGACACAGGTGCTTATCGCCATGTCTGTCATGACCTTAGTTTATTTAGAAAGTATAATGAGATAAATGATAAGAATATCCTTCTAGGAGACCATCACATGACAAAGGTGGCAGGCATTGGAAAAGTAGAACTGAAATTCACATCTGGCAAAGTGCTTGTGTTGAAGAAAGTTCTTCATACGCTTGGAATTCGAAAGAATTTGGTCTTTGGATATCTGCTTTACAAAGCTGGCTTCTCGCAAACTATAGGGTCAAATTTATTTACTTTAACTAAGAACAATGCTTTTGTGGGAAATGGCTACAGGACAGAAGGCATGTCTAAACTAAATTTAGAAATGATAAGAATTTAA
Coding sequence (CDS)
ATGCTTCCCTCGTCTTTCAAGGAGTATTGCAAACATCTTTCCCTAAAAACTGCCTATCTTCTCCATTCCCCTTCTCATCGACTTAACTTCCTCTTCCAAGTGGAGAAGCTGGTTTTGATCAATGCTTGTGTGTATAGTAAATGCACCGGGCACCCTACAAAACTGCCGAATGTGGTAGCATATGCTGGGGAACGGTACATTAAGCGAGATAAAGGGCGAAGTGCAACAACAATTTTGAGACGTATCAATCTGCTGCAATGGTCGGATTATTTCATGAAAGTGGCTACATTATGTATCTCTGAAGAGCAAAAAATCCCAGAGTCCAGTCCATCTAAGGAGCAAGTCAAAACTCATACGGCGTGGACAGAGACCAATTTTATATGTAATAATTTAATACTTAATGGTCTTACTGATGAGTTGTATGATTATTACAGCACAATGTCCATCGCGAAAGAAGTTTGGGATGTGTTACAAAAGAAGTATGACACTGAGGAAGCTAGATCCAAGAAGTATGTGAATGAGATTCAGAAGAAAGCAGATGAGATCATAAGCGAAGGTATGCGGCTTGACAATCAATTTCAAGTTGCAGTTATTATTGATAAATTACCTCATCTGTGGAAGGATTTCAAAACTACTCTAAGGCACAAAACCAAGGAGTTCTCGCTGGAAAGTCTCATCACGAATTGTAGAAATAGGAATCATCCTGCTGCACAGGCGAACCTGGTAGAAGATGAATATGTAGCCATGATTTTTGAAGTTAATGTCATAGGGGGGTCTGGAGGTTGGTGGCTAGACACAGGTGCTTATCGCCATGTCTGTCATGACCTTAGTTTATTTAGAAAGTATAATGAGATAAATGATAAGAATATCCTTCTAGGAGACCATCACATGACAAAGGTGGCAGGCATTGGAAAAGTAGAACTGAAATTCACATCTGGCAAAGTGCTTGTGTTGAAGAAAGTTCTTCATACGCTTGGAATTCGAAAGAATTTGGTCTTTGGATATCTGCTTTACAAAGCTGGCTTCTCGCAAACTATAGGGTCAAATTTATTTACTTTAACTAAGAACAATGCTTTTGTGGGAAATGGCTACAGGACAGAAGGCATGTCTAAACTAAATTTAGAAATGATAAGAATTTAA
Protein sequence
MLPSSFKEYCKHLSLKTAYLLHSPSHRLNFLFQVEKLVLINACVYSKCTGHPTKLPNVVAYAGERYIKRDKGRSATTILRRINLLQWSDYFMKVATLCISEEQKIPESSPSKEQVKTHTAWTETNFICNNLILNGLTDELYDYYSTMSIAKEVWDVLQKKYDTEEARSKKYVNEIQKKADEIISEGMRLDNQFQVAVIIDKLPHLWKDFKTTLRHKTKEFSLESLITNCRNRNHPAAQANLVEDEYVAMIFEVNVIGGSGGWWLDTGAYRHVCHDLSLFRKYNEINDKNILLGDHHMTKVAGIGKVELKFTSGKVLVLKKVLHTLGIRKNLVFGYLLYKAGFSQTIGSNLFTLTKNNAFVGNGYRTEGMSKLNLEMIRI*
Homology
BLAST of CSPI04G09020 vs. ExPASy Swiss-Prot
Match:
P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)
HSP 1 Score: 61.2 bits (147), Expect = 2.9e-08
Identity = 35/124 (28.23%), Postives = 59/124 (47.58%), Query Frame = 0
Query: 253 VNVIGGSGGWWLDTGAYRHVCHDLSLFRKYNEINDKNILLGDHHMTKVAGIGKVELKFTS 312
+++ G W +DT A H LF +Y + + +G+ +K+AGIG + +K
Sbjct: 285 MHLSGPESEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNV 344
Query: 313 GKVLVLKKVLHTLGIRKNLVFGYLLYKAGFSQTIGSNLFTLTKNNAFVGNGYRTEGMSKL 372
G LVLK V H +R NL+ G L + G+ + + LTK + + G + +
Sbjct: 345 GCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLYRT 404
Query: 373 NLEM 377
N E+
Sbjct: 405 NAEI 408
BLAST of CSPI04G09020 vs. ExPASy TrEMBL
Match:
A0A5A7UA92 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1166G00260 PE=4 SV=1)
HSP 1 Score: 384.4 bits (986), Expect = 5.4e-103
Identity = 207/340 (60.88%), Postives = 234/340 (68.82%), Query Frame = 0
Query: 93 KVATLCISEEQKIPESSPSKEQVKTHTAWTETNFICNNLILNGLTDELYDYYSTMSIAKE 152
KVAT C +E+ K+ E P+KEQ+K T WTET+FIC NLILNGLTDELYDYYSTM+ AK+
Sbjct: 36 KVATACTTEKPKVSEKDPTKEQLKNLTTWTETDFICKNLILNGLTDELYDYYSTMTTAKQ 95
Query: 153 VWDVLQKKYDTEEARSKKYV-------------------NEIQKKADEIISEGMRLDNQF 212
VW+ LQKKYDTEEA SKKY +EIQK A EII+EGM LD+QF
Sbjct: 96 VWEALQKKYDTEEAGSKKYAVSRYLRYQMTDDRSVEAQSHEIQKIAHEIINEGMPLDDQF 155
Query: 213 QVAVIIDKLPHLWKDFKTTLRHKTKEFSLESLITNCR----------------------- 272
QV +IIDKL LWKDFK TLRHKTKEFSLE+L T R
Sbjct: 156 QVTIIIDKLLLLWKDFKNTLRHKTKEFSLENLTTRLRIEEEAKKHDKKEEVNAIPRKKFT 215
Query: 273 -------------------NRNHP--AAQANLVEDEYVAMIFEVNVIGGSGGWWLDTGAY 332
+N+P + ANL+E+E VAMI EVNVIGGS GWWLDTGA
Sbjct: 216 AVLKSDLKPKGNKMKQGFNKQNNPQSTSMANLIENELVAMISEVNVIGGSEGWWLDTGAS 275
Query: 333 RHVCHDLSLFRKYNEINDKNILLGDHHMTKVAGIGKVELKFTSGKVLVLKKVLHTLGIRK 370
RHVCHDLS+FRKYNE+ DKNILLGDHH+TKV GI +VELKFTSGK LV+KKVLHT IRK
Sbjct: 276 RHVCHDLSIFRKYNEVKDKNILLGDHHITKVVGIEEVELKFTSGKTLVMKKVLHTPKIRK 335
BLAST of CSPI04G09020 vs. ExPASy TrEMBL
Match:
A0A5D3BDS3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00230 PE=4 SV=1)
HSP 1 Score: 383.3 bits (983), Expect = 1.2e-102
Identity = 206/340 (60.59%), Postives = 231/340 (67.94%), Query Frame = 0
Query: 93 KVATLCISEEQKIPESSPSKEQVKTHTAWTETNFICNNLILNGLTDELYDYYSTMSIAKE 152
KVAT C E+ K+ E P+KEQ+K T WTET+FIC NLILNGLTDELYDYYSTM+ AK+
Sbjct: 36 KVATACTIEKPKVSEKDPTKEQLKNLTTWTETDFICKNLILNGLTDELYDYYSTMTTAKQ 95
Query: 153 VWDVLQKKYDTEEARSKKYV-------------------NEIQKKADEIISEGMRLDNQF 212
VW+ LQKKYDTEEA SKKY +EIQK A EII+EGM LD+QF
Sbjct: 96 VWEALQKKYDTEEAGSKKYAVSRYLRYQMTDDRSVEAQSHEIQKIAHEIINEGMPLDDQF 155
Query: 213 QVAVIIDKLPHLWKDFKTTLRHKTKEFSLESLIT-------------------------- 272
QV +IIDKLP LWKDFK TLRHKTKEFSLE+LIT
Sbjct: 156 QVTIIIDKLPLLWKDFKNTLRHKTKEFSLENLITRLKIEEEAKKRDKKKEVNAIPRKKFT 215
Query: 273 ------------------NCRNRNHPAAQANLVEDEYVAMIFEVNVIGGSGGWWLDTGAY 332
N +N + ANL+E+E VAMI EVNVIGGS GWWLDT A
Sbjct: 216 AVLKSDLKPKGNKMKQGFNKQNNPQSTSMANLIENELVAMISEVNVIGGSEGWWLDTNAS 275
Query: 333 RHVCHDLSLFRKYNEINDKNILLGDHHMTKVAGIGKVELKFTSGKVLVLKKVLHTLGIRK 370
RHVCHDLS+FRKYNE+ DKNILLGDHH+TKV GI +VEL+FTSGK LVLKKV HT IRK
Sbjct: 276 RHVCHDLSIFRKYNEVKDKNILLGDHHITKVVGIEEVELRFTSGKTLVLKKVPHTPKIRK 335
BLAST of CSPI04G09020 vs. ExPASy TrEMBL
Match:
A0A5D3DRT2 (Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00180 PE=4 SV=1)
HSP 1 Score: 342.0 bits (876), Expect = 3.1e-90
Identity = 190/331 (57.40%), Postives = 217/331 (65.56%), Query Frame = 0
Query: 93 KVATLCISEEQKIPESSPSKEQVKTHTAWTETNFICNNLILNGLTDELYDYYSTMSIAKE 152
KVAT C E+ K+ E P+KEQ+ + WTET+FIC NLILNGLTDELYDYYSTM+ AKE
Sbjct: 40 KVATACTIEKPKVSEKDPTKEQLTSLATWTETDFICKNLILNGLTDELYDYYSTMATAKE 99
Query: 153 VWDVLQKKYDTEEARSKKYVNEIQKKADEIISEGMRLDNQFQVAVIIDKLPHLWKDFKTT 212
VWDVLQ KYD EE SKKYV +S +R +V +DFK T
Sbjct: 100 VWDVLQNKYDIEETGSKKYV----------VSRYLRYQMTDDKSV---------EDFKNT 159
Query: 213 LRHKTKEFSLESLITNCR------------------------------------------ 272
LRHKTKE SL+SLIT R
Sbjct: 160 LRHKTKELSLKSLITRLRIEEEARKHNKKEEVNAIPRKKPTAVLKPDLKPKGNKMKRESN 219
Query: 273 NRNHPAAQ--ANLVEDEYVAMIFEVNVIGGSGGWWLDTGAYRHVCHDLSLFRKYNEINDK 332
+N+P ++ ANL+EDE VAMI EVNVI G GWWLDTGA HVCHDLS+FRKYNE+ DK
Sbjct: 220 KQNNPQSRSTANLIEDELVAMISEVNVIRGFEGWWLDTGASHHVCHDLSIFRKYNEVKDK 279
Query: 333 NILLGDHHMTKVAGIGKVELKFTSGKVLVLKKVLHTLGIRKNLVFGYLLYKAGFSQTIGS 380
ILLGDHH TKVAGIGKVELKFTSGK+LVLK+VLHTL IRKNLV YLL KAGF+QTIGS
Sbjct: 280 KILLGDHHTTKVAGIGKVELKFTSGKMLVLKEVLHTLEIRKNLVSRYLLNKAGFTQTIGS 339
BLAST of CSPI04G09020 vs. ExPASy TrEMBL
Match:
A0A2P5FP19 (Zinc finger, CCHC-type (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_046500 PE=4 SV=1)
HSP 1 Score: 334.0 bits (855), Expect = 8.4e-88
Identity = 184/396 (46.46%), Postives = 228/396 (57.58%), Query Frame = 0
Query: 93 KVATLCISEEQKIPESSPSKEQVKTHTAWTETNFICNNLILNGLTDELYDYYSTMSIAKE 152
KVA +C SE+ +P + P + Q K + +W E +F+C N ILNGL+D+LYDYY++ AKE
Sbjct: 38 KVAYVCTSEKPILP-AEPDERQTKEYESWVEKDFLCKNFILNGLSDDLYDYYNSDKSAKE 97
Query: 153 VWDVLQKKYDTEEARSKKYV-------------------NEIQKKADEIISEGMRLDNQF 212
+WD LQKKYDTEEA +KKY +E+Q + EIISEGM LD QF
Sbjct: 98 IWDALQKKYDTEEAGTKKYAVSRYLKYQMTDDKSVEVQSHELQMISHEIISEGMSLDEQF 157
Query: 213 QVAVIIDKLPHLWKDFKTTLRHKTKEFSLESLIT-------------------------- 272
QVAV+IDKLP WKDFK+ LRHKTKEFSLESLIT
Sbjct: 158 QVAVLIDKLPPSWKDFKSVLRHKTKEFSLESLITRLRIEEEARKQDQKDEVLVVSNNKKK 217
Query: 273 ------------------------------------------------------------ 332
Sbjct: 218 STPAVLKPNGKNMKNQNRNRNQNRNNKNQNRNAPQNQNGQQPPSRNDSEQFICYNCNKPG 277
Query: 333 ----NCRNRNHPAAQANLVEDEYVAMIFEVNVIGGSGGWWLDTGAYRHVCHDLSLFRKYN 380
NCRNR PA QANL E++ +AMI E+N++GGS GWW+DTGA RHVC++ +LF+ Y+
Sbjct: 278 HMARNCRNRRRPAPQANLTEEQLIAMISEINIVGGSEGWWVDTGASRHVCNNRALFKTYS 337
BLAST of CSPI04G09020 vs. ExPASy TrEMBL
Match:
A0A5A7VQD4 (Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G00810 PE=4 SV=1)
HSP 1 Score: 327.8 bits (839), Expect = 6.0e-86
Identity = 186/323 (57.59%), Postives = 202/323 (62.54%), Query Frame = 0
Query: 147 MSIAKEVWDVLQKKYDTEEARSKKYV-------------------NEIQKKADEIISEGM 206
M+ AKEVWD LQKKYDTEEAR KKY +EIQK A EIISEGM
Sbjct: 1 MTTAKEVWDTLQKKYDTEEARLKKYAISQYLRYQMTDEKFVEAQSHEIQKIAHEIISEGM 60
Query: 207 RLDNQFQVAVIIDKLPHLWKDFKTTLRHKTKEFSLESLIT-------------------- 266
LD+QFQVAVIIDKLP LWKDFK TLRHKTKEF LESLIT
Sbjct: 61 PLDDQFQVAVIIDKLPPLWKDFKNTLRHKTKEFLLESLITRLMIEEEVRKHDKKEEVNAI 120
Query: 267 ---------------------------------------------------NCRNRNHPA 326
NCRNR+HP
Sbjct: 121 PKKKPTVVLKSDLKPKGNKMKRGSNKQNNPQSKSTVQIVCYNCNKLGHLARNCRNRSHPV 180
Query: 327 AQANLVEDEYVAMIFEVNVIGGSGGWWLDTGAYRHVCHDLSLFRKYNEINDKNILLGDHH 380
AQANL+E+E VAMIFEVNVIGGS GWWLDTGA+ HVCHDLSLFRKYNE+ DKNILLGDHH
Sbjct: 181 AQANLIENELVAMIFEVNVIGGSEGWWLDTGAFPHVCHDLSLFRKYNEVKDKNILLGDHH 240
BLAST of CSPI04G09020 vs. NCBI nr
Match:
KAA0050409.1 (hypothetical protein E6C27_scaffold1166G00260 [Cucumis melo var. makuwa])
HSP 1 Score: 384.4 bits (986), Expect = 1.1e-102
Identity = 207/340 (60.88%), Postives = 234/340 (68.82%), Query Frame = 0
Query: 93 KVATLCISEEQKIPESSPSKEQVKTHTAWTETNFICNNLILNGLTDELYDYYSTMSIAKE 152
KVAT C +E+ K+ E P+KEQ+K T WTET+FIC NLILNGLTDELYDYYSTM+ AK+
Sbjct: 36 KVATACTTEKPKVSEKDPTKEQLKNLTTWTETDFICKNLILNGLTDELYDYYSTMTTAKQ 95
Query: 153 VWDVLQKKYDTEEARSKKYV-------------------NEIQKKADEIISEGMRLDNQF 212
VW+ LQKKYDTEEA SKKY +EIQK A EII+EGM LD+QF
Sbjct: 96 VWEALQKKYDTEEAGSKKYAVSRYLRYQMTDDRSVEAQSHEIQKIAHEIINEGMPLDDQF 155
Query: 213 QVAVIIDKLPHLWKDFKTTLRHKTKEFSLESLITNCR----------------------- 272
QV +IIDKL LWKDFK TLRHKTKEFSLE+L T R
Sbjct: 156 QVTIIIDKLLLLWKDFKNTLRHKTKEFSLENLTTRLRIEEEAKKHDKKEEVNAIPRKKFT 215
Query: 273 -------------------NRNHP--AAQANLVEDEYVAMIFEVNVIGGSGGWWLDTGAY 332
+N+P + ANL+E+E VAMI EVNVIGGS GWWLDTGA
Sbjct: 216 AVLKSDLKPKGNKMKQGFNKQNNPQSTSMANLIENELVAMISEVNVIGGSEGWWLDTGAS 275
Query: 333 RHVCHDLSLFRKYNEINDKNILLGDHHMTKVAGIGKVELKFTSGKVLVLKKVLHTLGIRK 370
RHVCHDLS+FRKYNE+ DKNILLGDHH+TKV GI +VELKFTSGK LV+KKVLHT IRK
Sbjct: 276 RHVCHDLSIFRKYNEVKDKNILLGDHHITKVVGIEEVELKFTSGKTLVMKKVLHTPKIRK 335
BLAST of CSPI04G09020 vs. NCBI nr
Match:
TYJ98000.1 (hypothetical protein E5676_scaffold487G00230 [Cucumis melo var. makuwa])
HSP 1 Score: 383.3 bits (983), Expect = 2.5e-102
Identity = 206/340 (60.59%), Postives = 231/340 (67.94%), Query Frame = 0
Query: 93 KVATLCISEEQKIPESSPSKEQVKTHTAWTETNFICNNLILNGLTDELYDYYSTMSIAKE 152
KVAT C E+ K+ E P+KEQ+K T WTET+FIC NLILNGLTDELYDYYSTM+ AK+
Sbjct: 36 KVATACTIEKPKVSEKDPTKEQLKNLTTWTETDFICKNLILNGLTDELYDYYSTMTTAKQ 95
Query: 153 VWDVLQKKYDTEEARSKKYV-------------------NEIQKKADEIISEGMRLDNQF 212
VW+ LQKKYDTEEA SKKY +EIQK A EII+EGM LD+QF
Sbjct: 96 VWEALQKKYDTEEAGSKKYAVSRYLRYQMTDDRSVEAQSHEIQKIAHEIINEGMPLDDQF 155
Query: 213 QVAVIIDKLPHLWKDFKTTLRHKTKEFSLESLIT-------------------------- 272
QV +IIDKLP LWKDFK TLRHKTKEFSLE+LIT
Sbjct: 156 QVTIIIDKLPLLWKDFKNTLRHKTKEFSLENLITRLKIEEEAKKRDKKKEVNAIPRKKFT 215
Query: 273 ------------------NCRNRNHPAAQANLVEDEYVAMIFEVNVIGGSGGWWLDTGAY 332
N +N + ANL+E+E VAMI EVNVIGGS GWWLDT A
Sbjct: 216 AVLKSDLKPKGNKMKQGFNKQNNPQSTSMANLIENELVAMISEVNVIGGSEGWWLDTNAS 275
Query: 333 RHVCHDLSLFRKYNEINDKNILLGDHHMTKVAGIGKVELKFTSGKVLVLKKVLHTLGIRK 370
RHVCHDLS+FRKYNE+ DKNILLGDHH+TKV GI +VEL+FTSGK LVLKKV HT IRK
Sbjct: 276 RHVCHDLSIFRKYNEVKDKNILLGDHHITKVVGIEEVELRFTSGKTLVLKKVPHTPKIRK 335
BLAST of CSPI04G09020 vs. NCBI nr
Match:
KAA0059670.1 (putative Polyprotein [Cucumis melo var. makuwa] >TYK26109.1 putative Polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 342.0 bits (876), Expect = 6.4e-90
Identity = 190/331 (57.40%), Postives = 217/331 (65.56%), Query Frame = 0
Query: 93 KVATLCISEEQKIPESSPSKEQVKTHTAWTETNFICNNLILNGLTDELYDYYSTMSIAKE 152
KVAT C E+ K+ E P+KEQ+ + WTET+FIC NLILNGLTDELYDYYSTM+ AKE
Sbjct: 40 KVATACTIEKPKVSEKDPTKEQLTSLATWTETDFICKNLILNGLTDELYDYYSTMATAKE 99
Query: 153 VWDVLQKKYDTEEARSKKYVNEIQKKADEIISEGMRLDNQFQVAVIIDKLPHLWKDFKTT 212
VWDVLQ KYD EE SKKYV +S +R +V +DFK T
Sbjct: 100 VWDVLQNKYDIEETGSKKYV----------VSRYLRYQMTDDKSV---------EDFKNT 159
Query: 213 LRHKTKEFSLESLITNCR------------------------------------------ 272
LRHKTKE SL+SLIT R
Sbjct: 160 LRHKTKELSLKSLITRLRIEEEARKHNKKEEVNAIPRKKPTAVLKPDLKPKGNKMKRESN 219
Query: 273 NRNHPAAQ--ANLVEDEYVAMIFEVNVIGGSGGWWLDTGAYRHVCHDLSLFRKYNEINDK 332
+N+P ++ ANL+EDE VAMI EVNVI G GWWLDTGA HVCHDLS+FRKYNE+ DK
Sbjct: 220 KQNNPQSRSTANLIEDELVAMISEVNVIRGFEGWWLDTGASHHVCHDLSIFRKYNEVKDK 279
Query: 333 NILLGDHHMTKVAGIGKVELKFTSGKVLVLKKVLHTLGIRKNLVFGYLLYKAGFSQTIGS 380
ILLGDHH TKVAGIGKVELKFTSGK+LVLK+VLHTL IRKNLV YLL KAGF+QTIGS
Sbjct: 280 KILLGDHHTTKVAGIGKVELKFTSGKMLVLKEVLHTLEIRKNLVSRYLLNKAGFTQTIGS 339
BLAST of CSPI04G09020 vs. NCBI nr
Match:
PON99483.1 (Zinc finger, CCHC-type, partial [Trema orientale])
HSP 1 Score: 334.0 bits (855), Expect = 1.7e-87
Identity = 184/396 (46.46%), Postives = 228/396 (57.58%), Query Frame = 0
Query: 93 KVATLCISEEQKIPESSPSKEQVKTHTAWTETNFICNNLILNGLTDELYDYYSTMSIAKE 152
KVA +C SE+ +P + P + Q K + +W E +F+C N ILNGL+D+LYDYY++ AKE
Sbjct: 38 KVAYVCTSEKPILP-AEPDERQTKEYESWVEKDFLCKNFILNGLSDDLYDYYNSDKSAKE 97
Query: 153 VWDVLQKKYDTEEARSKKYV-------------------NEIQKKADEIISEGMRLDNQF 212
+WD LQKKYDTEEA +KKY +E+Q + EIISEGM LD QF
Sbjct: 98 IWDALQKKYDTEEAGTKKYAVSRYLKYQMTDDKSVEVQSHELQMISHEIISEGMSLDEQF 157
Query: 213 QVAVIIDKLPHLWKDFKTTLRHKTKEFSLESLIT-------------------------- 272
QVAV+IDKLP WKDFK+ LRHKTKEFSLESLIT
Sbjct: 158 QVAVLIDKLPPSWKDFKSVLRHKTKEFSLESLITRLRIEEEARKQDQKDEVLVVSNNKKK 217
Query: 273 ------------------------------------------------------------ 332
Sbjct: 218 STPAVLKPNGKNMKNQNRNRNQNRNNKNQNRNAPQNQNGQQPPSRNDSEQFICYNCNKPG 277
Query: 333 ----NCRNRNHPAAQANLVEDEYVAMIFEVNVIGGSGGWWLDTGAYRHVCHDLSLFRKYN 380
NCRNR PA QANL E++ +AMI E+N++GGS GWW+DTGA RHVC++ +LF+ Y+
Sbjct: 278 HMARNCRNRRRPAPQANLTEEQLIAMISEINIVGGSEGWWVDTGASRHVCNNRALFKTYS 337
BLAST of CSPI04G09020 vs. NCBI nr
Match:
KAA0067915.1 (putative Polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 327.8 bits (839), Expect = 1.2e-85
Identity = 186/323 (57.59%), Postives = 202/323 (62.54%), Query Frame = 0
Query: 147 MSIAKEVWDVLQKKYDTEEARSKKYV-------------------NEIQKKADEIISEGM 206
M+ AKEVWD LQKKYDTEEAR KKY +EIQK A EIISEGM
Sbjct: 1 MTTAKEVWDTLQKKYDTEEARLKKYAISQYLRYQMTDEKFVEAQSHEIQKIAHEIISEGM 60
Query: 207 RLDNQFQVAVIIDKLPHLWKDFKTTLRHKTKEFSLESLIT-------------------- 266
LD+QFQVAVIIDKLP LWKDFK TLRHKTKEF LESLIT
Sbjct: 61 PLDDQFQVAVIIDKLPPLWKDFKNTLRHKTKEFLLESLITRLMIEEEVRKHDKKEEVNAI 120
Query: 267 ---------------------------------------------------NCRNRNHPA 326
NCRNR+HP
Sbjct: 121 PKKKPTVVLKSDLKPKGNKMKRGSNKQNNPQSKSTVQIVCYNCNKLGHLARNCRNRSHPV 180
Query: 327 AQANLVEDEYVAMIFEVNVIGGSGGWWLDTGAYRHVCHDLSLFRKYNEINDKNILLGDHH 380
AQANL+E+E VAMIFEVNVIGGS GWWLDTGA+ HVCHDLSLFRKYNE+ DKNILLGDHH
Sbjct: 181 AQANLIENELVAMIFEVNVIGGSEGWWLDTGAFPHVCHDLSLFRKYNEVKDKNILLGDHH 240
BLAST of CSPI04G09020 vs. TAIR 10
Match:
AT4G00980.1 (zinc knuckle (CCHC-type) family protein )
HSP 1 Score: 63.9 bits (154), Expect = 3.1e-10
Identity = 43/130 (33.08%), Postives = 61/130 (46.92%), Query Frame = 0
Query: 106 PESSPSK--EQVKTHTAWTETNFICNNLILNGLTDELYDYYS-TMSIAKEVWDVLQKKYD 165
PE++P + T W +++C ++N L+D LY YS AKE+WD L+ Y
Sbjct: 236 PETNPREITRADATGKKWLRDDYLCYTHLMNSLSDHLYRRYSQKFKHAKELWDELKWVYQ 295
Query: 166 TEEARSKK-------------------YVNEIQKKADEIISEGMRLDNQFQVAVIIDKLP 214
+E++SK+ V K AD I+S GM LD F V+ II K P
Sbjct: 296 CDESKSKRSQVRKYIEFRMVEERPILEQVQVFNKIADSIVSAGMFLDEAFHVSTIISKFP 355
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
P10978 | 2.9e-08 | 28.23 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... | [more] |
Match Name | E-value | Identity | Description | |
A0A5A7UA92 | 5.4e-103 | 60.88 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3BDS3 | 1.2e-102 | 60.59 | Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3DRT2 | 3.1e-90 | 57.40 | Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111... | [more] |
A0A2P5FP19 | 8.4e-88 | 46.46 | Zinc finger, CCHC-type (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_0465... | [more] |
A0A5A7VQD4 | 6.0e-86 | 57.59 | Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138... | [more] |
Match Name | E-value | Identity | Description | |
KAA0050409.1 | 1.1e-102 | 60.88 | hypothetical protein E6C27_scaffold1166G00260 [Cucumis melo var. makuwa] | [more] |
TYJ98000.1 | 2.5e-102 | 60.59 | hypothetical protein E5676_scaffold487G00230 [Cucumis melo var. makuwa] | [more] |
KAA0059670.1 | 6.4e-90 | 57.40 | putative Polyprotein [Cucumis melo var. makuwa] >TYK26109.1 putative Polyprotein... | [more] |
PON99483.1 | 1.7e-87 | 46.46 | Zinc finger, CCHC-type, partial [Trema orientale] | [more] |
KAA0067915.1 | 1.2e-85 | 57.59 | putative Polyprotein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
AT4G00980.1 | 3.1e-10 | 33.08 | zinc knuckle (CCHC-type) family protein | [more] |