CSPI04G09020 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G09020
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationChr4: 6813567 .. 6816229 (-)
RNA-Seq ExpressionCSPI04G09020
SyntenyCSPI04G09020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCCCTCGTCTTTCAAGGAGTATTGCAAACATCTTTCCCTAAAAACTGCCTATCTTCTCCATTCCCCTTCTCATCGACTTAACTTCCTCTTCCAAGTAGTTGTTGGTTCCTCACGTGATTTATTTTTCTTTCTTCAATAACAATGGTGGTCTAACAAACTTCTTGGAGCCTTGAAATTCTGGATCTTAAGTATTTCGAGGCTTCGTCCTCTATGTATTGTTGATATGTAATGTTCTATACGCTTCATAATGATTTCTTTTTGACCTTTCAGTTGTGATTTTTTTAAATGATTCTGTTTGACAGGTGGAGAAGCTGGTTTTGATCAATGCTTGTGTGTATAGTAAATGCACCGGGCACCCTACAAAACTGCCGAATGTGGTAGCATATGCTGGGGTAAACCTCCATGGCATACAACTTAGTGATGCTAGTAATTATGATCCCATTTATTTTCTTGTAAATTGCAGTTACTATTTAGCAATTTTAAATTTATTTTGGAAGATTGATTTGACAGAGTCTACAACTTTTTAGCTTTTGCTCTTCTTAATAAAATTGTTTACGAAAAACTCCATGTTGAATGAAAAATTCTTTATGCGAGAAATACAAGCTATGCGCTATGATTTAAATGAGAAGACTAAGCTATGTGATAGCTATGTTACAAACATTATGCAAATGAAAACTTGAGTCTCTCGTGTTTCTAGTTTTCAACTATGTAATATTGATCATGACTATGCGATAACATGAGCTATGCGAGATAGCTACGCAAAAGGTTAGAACATCTCATCGCATATGTTGACATCTTAGGCGAGATGGTCAAATATGATGATGAGACATATTAAAGTCATGATCTTTATCACATGATTAAAAAGAATAAAATGTTTTATTACCATTTTAGCTTTTAATAAGTCAACATAACTCCTCCATAAATAAAAAAGGTTACAAATTGATTTCTCAAAATTAATTTCCAATGGTCTACTGATTCCCTCACACTATATATATACTTTCTTCATCATTTCATTATACGCGCGAGAAATTTTCATAAGCAAGAAAACTCTCTCAAAAACTTCTTCTTTTGAGTTTACCGAGTAATTGTGAGTGTTTATTTGAGTGTTGAGATTCCAATTGATTTCTGTGCAAAATCAATTGAAGAACAAAAGTTGTTTTATCCTGGAGACGACGGGGCAATAATTTTGTTTGCACAAAGGAGCAAGCCGTGAAACGTCTTCAAGAGAGTGTGATCCGCGACTCATCCATTTCTTAACCAATCTTTTGGTTTCTAGCTTTGCGATCTGACCATTTGGCGAGATAATTAGTAAGCGACTTGACTACGCAAGGAACGGTACATTAAGCGAGATAAAGGGCGAAGTGCAACAACAATTTTGAGACGTATCAATCTGCTGCAATGGTCGGATTATTTCATGGTGATTTGAGTTCCTCCGACCTCAATCGTCCTTTTCGCTTCGAAGGAGCAAATTTTCAGAGGTAGAAACAAAAGATGCTGTTTTTTCTTACTTTGAAGAAAGTGGCTACATTATGTATCTCTGAAGAGCAAAAAATCCCAGAGTCCAGTCCATCTAAGGAGCAAGTCAAAACTCATACGGCGTGGACAGAGACCAATTTTATATGTAATAATTTAATACTTAATGGTCTTACTGATGAGTTGTATGATTATTACAGCACAATGTCCATCGCGAAAGAAGTTTGGGATGTGTTACAAAAGAAGTATGACACTGAGGAAGCTAGATCCAAGAAGTATGTGGTAAGCCGATACTTGCATTATCAAATGATTGATGACAGATCAGTGGAGGCTCAATAGAATGAGATTCAGAAGAAAGCAGATGAGATCATAAGCGAAGGTATGCGGCTTGACAATCAATTTCAAGTTGCAGTTATTATTGATAAATTACCTCATCTGTGGAAGGATTTCAAAACTACTCTAAGGCACAAAACCAAGGAGTTCTCGCTGGAAAGTCTCATCACGTAATTAAGGATTGAGGAAGAGGCGAGAAGACATGACCAAAAGGAAGAGGTGAATGCAATTCCCAGAAAGAAGTCAATCGTAGTGCTGAAACCGGATCTGAAGCCTAAACAAAATAAAATGAAACACAGATCCAACAAGCAAAGCAATTAGCAAAGACCCCAGTCCAGAAGTACGATACAAATTGTTTGCTACAATTATAATAAGCTTGGATACTTAGCTAGGAATTGTAGAAATAGGAATCATCCTGCTGCACAGGCGAACCTGGTAGAAGATGAATATGTAGCCATGATTTTTGAAGTTAATGTCATAGGGGGGTCTGGAGGTTGGTGGCTAGACACAGGTGCTTATCGCCATGTCTGTCATGACCTTAGTTTATTTAGAAAGTATAATGAGATAAATGATAAGAATATCCTTCTAGGAGACCATCACATGACAAAGGTGGCAGGCATTGGAAAAGTAGAACTGAAATTCACATCTGGCAAAGTGCTTGTGTTGAAGAAAGTTCTTCATACGCTTGGAATTCGAAAGAATTTGGTCTTTGGATATCTGCTTTACAAAGCTGGCTTCTCGCAAACTATAGGGTCAAATTTATTTACTTTAACTAAGAACAATGCTTTTGTGGGAAATGGCTACAGGACAGAAGGCATGTCTAAACTAAATTTAGAAATGATAAGAATTTAA

mRNA sequence

ATGCTTCCCTCGTCTTTCAAGGAGTATTGCAAACATCTTTCCCTAAAAACTGCCTATCTTCTCCATTCCCCTTCTCATCGACTTAACTTCCTCTTCCAAGTGGAGAAGCTGGTTTTGATCAATGCTTGTGTGTATAGTAAATGCACCGGGCACCCTACAAAACTGCCGAATGTGGTAGCATATGCTGGGGAACGGTACATTAAGCGAGATAAAGGGCGAAGTGCAACAACAATTTTGAGACGTATCAATCTGCTGCAATGGTCGGATTATTTCATGAAAGTGGCTACATTATGTATCTCTGAAGAGCAAAAAATCCCAGAGTCCAGTCCATCTAAGGAGCAAGTCAAAACTCATACGGCGTGGACAGAGACCAATTTTATATGTAATAATTTAATACTTAATGGTCTTACTGATGAGTTGTATGATTATTACAGCACAATGTCCATCGCGAAAGAAGTTTGGGATGTGTTACAAAAGAAGTATGACACTGAGGAAGCTAGATCCAAGAAGTATGTGAATGAGATTCAGAAGAAAGCAGATGAGATCATAAGCGAAGGTATGCGGCTTGACAATCAATTTCAAGTTGCAGTTATTATTGATAAATTACCTCATCTGTGGAAGGATTTCAAAACTACTCTAAGGCACAAAACCAAGGAGTTCTCGCTGGAAAGTCTCATCACGAATTGTAGAAATAGGAATCATCCTGCTGCACAGGCGAACCTGGTAGAAGATGAATATGTAGCCATGATTTTTGAAGTTAATGTCATAGGGGGGTCTGGAGGTTGGTGGCTAGACACAGGTGCTTATCGCCATGTCTGTCATGACCTTAGTTTATTTAGAAAGTATAATGAGATAAATGATAAGAATATCCTTCTAGGAGACCATCACATGACAAAGGTGGCAGGCATTGGAAAAGTAGAACTGAAATTCACATCTGGCAAAGTGCTTGTGTTGAAGAAAGTTCTTCATACGCTTGGAATTCGAAAGAATTTGGTCTTTGGATATCTGCTTTACAAAGCTGGCTTCTCGCAAACTATAGGGTCAAATTTATTTACTTTAACTAAGAACAATGCTTTTGTGGGAAATGGCTACAGGACAGAAGGCATGTCTAAACTAAATTTAGAAATGATAAGAATTTAA

Coding sequence (CDS)

ATGCTTCCCTCGTCTTTCAAGGAGTATTGCAAACATCTTTCCCTAAAAACTGCCTATCTTCTCCATTCCCCTTCTCATCGACTTAACTTCCTCTTCCAAGTGGAGAAGCTGGTTTTGATCAATGCTTGTGTGTATAGTAAATGCACCGGGCACCCTACAAAACTGCCGAATGTGGTAGCATATGCTGGGGAACGGTACATTAAGCGAGATAAAGGGCGAAGTGCAACAACAATTTTGAGACGTATCAATCTGCTGCAATGGTCGGATTATTTCATGAAAGTGGCTACATTATGTATCTCTGAAGAGCAAAAAATCCCAGAGTCCAGTCCATCTAAGGAGCAAGTCAAAACTCATACGGCGTGGACAGAGACCAATTTTATATGTAATAATTTAATACTTAATGGTCTTACTGATGAGTTGTATGATTATTACAGCACAATGTCCATCGCGAAAGAAGTTTGGGATGTGTTACAAAAGAAGTATGACACTGAGGAAGCTAGATCCAAGAAGTATGTGAATGAGATTCAGAAGAAAGCAGATGAGATCATAAGCGAAGGTATGCGGCTTGACAATCAATTTCAAGTTGCAGTTATTATTGATAAATTACCTCATCTGTGGAAGGATTTCAAAACTACTCTAAGGCACAAAACCAAGGAGTTCTCGCTGGAAAGTCTCATCACGAATTGTAGAAATAGGAATCATCCTGCTGCACAGGCGAACCTGGTAGAAGATGAATATGTAGCCATGATTTTTGAAGTTAATGTCATAGGGGGGTCTGGAGGTTGGTGGCTAGACACAGGTGCTTATCGCCATGTCTGTCATGACCTTAGTTTATTTAGAAAGTATAATGAGATAAATGATAAGAATATCCTTCTAGGAGACCATCACATGACAAAGGTGGCAGGCATTGGAAAAGTAGAACTGAAATTCACATCTGGCAAAGTGCTTGTGTTGAAGAAAGTTCTTCATACGCTTGGAATTCGAAAGAATTTGGTCTTTGGATATCTGCTTTACAAAGCTGGCTTCTCGCAAACTATAGGGTCAAATTTATTTACTTTAACTAAGAACAATGCTTTTGTGGGAAATGGCTACAGGACAGAAGGCATGTCTAAACTAAATTTAGAAATGATAAGAATTTAA

Protein sequence

MLPSSFKEYCKHLSLKTAYLLHSPSHRLNFLFQVEKLVLINACVYSKCTGHPTKLPNVVAYAGERYIKRDKGRSATTILRRINLLQWSDYFMKVATLCISEEQKIPESSPSKEQVKTHTAWTETNFICNNLILNGLTDELYDYYSTMSIAKEVWDVLQKKYDTEEARSKKYVNEIQKKADEIISEGMRLDNQFQVAVIIDKLPHLWKDFKTTLRHKTKEFSLESLITNCRNRNHPAAQANLVEDEYVAMIFEVNVIGGSGGWWLDTGAYRHVCHDLSLFRKYNEINDKNILLGDHHMTKVAGIGKVELKFTSGKVLVLKKVLHTLGIRKNLVFGYLLYKAGFSQTIGSNLFTLTKNNAFVGNGYRTEGMSKLNLEMIRI*
Homology
BLAST of CSPI04G09020 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 2.9e-08
Identity = 35/124 (28.23%), Postives = 59/124 (47.58%), Query Frame = 0

Query: 253 VNVIGGSGGWWLDTGAYRHVCHDLSLFRKYNEINDKNILLGDHHMTKVAGIGKVELKFTS 312
           +++ G    W +DT A  H      LF +Y   +   + +G+   +K+AGIG + +K   
Sbjct: 285 MHLSGPESEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNV 344

Query: 313 GKVLVLKKVLHTLGIRKNLVFGYLLYKAGFSQTIGSNLFTLTKNNAFVGNGYRTEGMSKL 372
           G  LVLK V H   +R NL+ G  L + G+     +  + LTK +  +  G     + + 
Sbjct: 345 GCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLYRT 404

Query: 373 NLEM 377
           N E+
Sbjct: 405 NAEI 408

BLAST of CSPI04G09020 vs. ExPASy TrEMBL
Match: A0A5A7UA92 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1166G00260 PE=4 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 5.4e-103
Identity = 207/340 (60.88%), Postives = 234/340 (68.82%), Query Frame = 0

Query: 93  KVATLCISEEQKIPESSPSKEQVKTHTAWTETNFICNNLILNGLTDELYDYYSTMSIAKE 152
           KVAT C +E+ K+ E  P+KEQ+K  T WTET+FIC NLILNGLTDELYDYYSTM+ AK+
Sbjct: 36  KVATACTTEKPKVSEKDPTKEQLKNLTTWTETDFICKNLILNGLTDELYDYYSTMTTAKQ 95

Query: 153 VWDVLQKKYDTEEARSKKYV-------------------NEIQKKADEIISEGMRLDNQF 212
           VW+ LQKKYDTEEA SKKY                    +EIQK A EII+EGM LD+QF
Sbjct: 96  VWEALQKKYDTEEAGSKKYAVSRYLRYQMTDDRSVEAQSHEIQKIAHEIINEGMPLDDQF 155

Query: 213 QVAVIIDKLPHLWKDFKTTLRHKTKEFSLESLITNCR----------------------- 272
           QV +IIDKL  LWKDFK TLRHKTKEFSLE+L T  R                       
Sbjct: 156 QVTIIIDKLLLLWKDFKNTLRHKTKEFSLENLTTRLRIEEEAKKHDKKEEVNAIPRKKFT 215

Query: 273 -------------------NRNHP--AAQANLVEDEYVAMIFEVNVIGGSGGWWLDTGAY 332
                               +N+P   + ANL+E+E VAMI EVNVIGGS GWWLDTGA 
Sbjct: 216 AVLKSDLKPKGNKMKQGFNKQNNPQSTSMANLIENELVAMISEVNVIGGSEGWWLDTGAS 275

Query: 333 RHVCHDLSLFRKYNEINDKNILLGDHHMTKVAGIGKVELKFTSGKVLVLKKVLHTLGIRK 370
           RHVCHDLS+FRKYNE+ DKNILLGDHH+TKV GI +VELKFTSGK LV+KKVLHT  IRK
Sbjct: 276 RHVCHDLSIFRKYNEVKDKNILLGDHHITKVVGIEEVELKFTSGKTLVMKKVLHTPKIRK 335

BLAST of CSPI04G09020 vs. ExPASy TrEMBL
Match: A0A5D3BDS3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00230 PE=4 SV=1)

HSP 1 Score: 383.3 bits (983), Expect = 1.2e-102
Identity = 206/340 (60.59%), Postives = 231/340 (67.94%), Query Frame = 0

Query: 93  KVATLCISEEQKIPESSPSKEQVKTHTAWTETNFICNNLILNGLTDELYDYYSTMSIAKE 152
           KVAT C  E+ K+ E  P+KEQ+K  T WTET+FIC NLILNGLTDELYDYYSTM+ AK+
Sbjct: 36  KVATACTIEKPKVSEKDPTKEQLKNLTTWTETDFICKNLILNGLTDELYDYYSTMTTAKQ 95

Query: 153 VWDVLQKKYDTEEARSKKYV-------------------NEIQKKADEIISEGMRLDNQF 212
           VW+ LQKKYDTEEA SKKY                    +EIQK A EII+EGM LD+QF
Sbjct: 96  VWEALQKKYDTEEAGSKKYAVSRYLRYQMTDDRSVEAQSHEIQKIAHEIINEGMPLDDQF 155

Query: 213 QVAVIIDKLPHLWKDFKTTLRHKTKEFSLESLIT-------------------------- 272
           QV +IIDKLP LWKDFK TLRHKTKEFSLE+LIT                          
Sbjct: 156 QVTIIIDKLPLLWKDFKNTLRHKTKEFSLENLITRLKIEEEAKKRDKKKEVNAIPRKKFT 215

Query: 273 ------------------NCRNRNHPAAQANLVEDEYVAMIFEVNVIGGSGGWWLDTGAY 332
                             N +N     + ANL+E+E VAMI EVNVIGGS GWWLDT A 
Sbjct: 216 AVLKSDLKPKGNKMKQGFNKQNNPQSTSMANLIENELVAMISEVNVIGGSEGWWLDTNAS 275

Query: 333 RHVCHDLSLFRKYNEINDKNILLGDHHMTKVAGIGKVELKFTSGKVLVLKKVLHTLGIRK 370
           RHVCHDLS+FRKYNE+ DKNILLGDHH+TKV GI +VEL+FTSGK LVLKKV HT  IRK
Sbjct: 276 RHVCHDLSIFRKYNEVKDKNILLGDHHITKVVGIEEVELRFTSGKTLVLKKVPHTPKIRK 335

BLAST of CSPI04G09020 vs. ExPASy TrEMBL
Match: A0A5D3DRT2 (Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00180 PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 3.1e-90
Identity = 190/331 (57.40%), Postives = 217/331 (65.56%), Query Frame = 0

Query: 93  KVATLCISEEQKIPESSPSKEQVKTHTAWTETNFICNNLILNGLTDELYDYYSTMSIAKE 152
           KVAT C  E+ K+ E  P+KEQ+ +   WTET+FIC NLILNGLTDELYDYYSTM+ AKE
Sbjct: 40  KVATACTIEKPKVSEKDPTKEQLTSLATWTETDFICKNLILNGLTDELYDYYSTMATAKE 99

Query: 153 VWDVLQKKYDTEEARSKKYVNEIQKKADEIISEGMRLDNQFQVAVIIDKLPHLWKDFKTT 212
           VWDVLQ KYD EE  SKKYV          +S  +R       +V         +DFK T
Sbjct: 100 VWDVLQNKYDIEETGSKKYV----------VSRYLRYQMTDDKSV---------EDFKNT 159

Query: 213 LRHKTKEFSLESLITNCR------------------------------------------ 272
           LRHKTKE SL+SLIT  R                                          
Sbjct: 160 LRHKTKELSLKSLITRLRIEEEARKHNKKEEVNAIPRKKPTAVLKPDLKPKGNKMKRESN 219

Query: 273 NRNHPAAQ--ANLVEDEYVAMIFEVNVIGGSGGWWLDTGAYRHVCHDLSLFRKYNEINDK 332
            +N+P ++  ANL+EDE VAMI EVNVI G  GWWLDTGA  HVCHDLS+FRKYNE+ DK
Sbjct: 220 KQNNPQSRSTANLIEDELVAMISEVNVIRGFEGWWLDTGASHHVCHDLSIFRKYNEVKDK 279

Query: 333 NILLGDHHMTKVAGIGKVELKFTSGKVLVLKKVLHTLGIRKNLVFGYLLYKAGFSQTIGS 380
            ILLGDHH TKVAGIGKVELKFTSGK+LVLK+VLHTL IRKNLV  YLL KAGF+QTIGS
Sbjct: 280 KILLGDHHTTKVAGIGKVELKFTSGKMLVLKEVLHTLEIRKNLVSRYLLNKAGFTQTIGS 339

BLAST of CSPI04G09020 vs. ExPASy TrEMBL
Match: A0A2P5FP19 (Zinc finger, CCHC-type (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_046500 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 8.4e-88
Identity = 184/396 (46.46%), Postives = 228/396 (57.58%), Query Frame = 0

Query: 93  KVATLCISEEQKIPESSPSKEQVKTHTAWTETNFICNNLILNGLTDELYDYYSTMSIAKE 152
           KVA +C SE+  +P + P + Q K + +W E +F+C N ILNGL+D+LYDYY++   AKE
Sbjct: 38  KVAYVCTSEKPILP-AEPDERQTKEYESWVEKDFLCKNFILNGLSDDLYDYYNSDKSAKE 97

Query: 153 VWDVLQKKYDTEEARSKKYV-------------------NEIQKKADEIISEGMRLDNQF 212
           +WD LQKKYDTEEA +KKY                    +E+Q  + EIISEGM LD QF
Sbjct: 98  IWDALQKKYDTEEAGTKKYAVSRYLKYQMTDDKSVEVQSHELQMISHEIISEGMSLDEQF 157

Query: 213 QVAVIIDKLPHLWKDFKTTLRHKTKEFSLESLIT-------------------------- 272
           QVAV+IDKLP  WKDFK+ LRHKTKEFSLESLIT                          
Sbjct: 158 QVAVLIDKLPPSWKDFKSVLRHKTKEFSLESLITRLRIEEEARKQDQKDEVLVVSNNKKK 217

Query: 273 ------------------------------------------------------------ 332
                                                                       
Sbjct: 218 STPAVLKPNGKNMKNQNRNRNQNRNNKNQNRNAPQNQNGQQPPSRNDSEQFICYNCNKPG 277

Query: 333 ----NCRNRNHPAAQANLVEDEYVAMIFEVNVIGGSGGWWLDTGAYRHVCHDLSLFRKYN 380
               NCRNR  PA QANL E++ +AMI E+N++GGS GWW+DTGA RHVC++ +LF+ Y+
Sbjct: 278 HMARNCRNRRRPAPQANLTEEQLIAMISEINIVGGSEGWWVDTGASRHVCNNRALFKTYS 337

BLAST of CSPI04G09020 vs. ExPASy TrEMBL
Match: A0A5A7VQD4 (Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G00810 PE=4 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 6.0e-86
Identity = 186/323 (57.59%), Postives = 202/323 (62.54%), Query Frame = 0

Query: 147 MSIAKEVWDVLQKKYDTEEARSKKYV-------------------NEIQKKADEIISEGM 206
           M+ AKEVWD LQKKYDTEEAR KKY                    +EIQK A EIISEGM
Sbjct: 1   MTTAKEVWDTLQKKYDTEEARLKKYAISQYLRYQMTDEKFVEAQSHEIQKIAHEIISEGM 60

Query: 207 RLDNQFQVAVIIDKLPHLWKDFKTTLRHKTKEFSLESLIT-------------------- 266
            LD+QFQVAVIIDKLP LWKDFK TLRHKTKEF LESLIT                    
Sbjct: 61  PLDDQFQVAVIIDKLPPLWKDFKNTLRHKTKEFLLESLITRLMIEEEVRKHDKKEEVNAI 120

Query: 267 ---------------------------------------------------NCRNRNHPA 326
                                                              NCRNR+HP 
Sbjct: 121 PKKKPTVVLKSDLKPKGNKMKRGSNKQNNPQSKSTVQIVCYNCNKLGHLARNCRNRSHPV 180

Query: 327 AQANLVEDEYVAMIFEVNVIGGSGGWWLDTGAYRHVCHDLSLFRKYNEINDKNILLGDHH 380
           AQANL+E+E VAMIFEVNVIGGS GWWLDTGA+ HVCHDLSLFRKYNE+ DKNILLGDHH
Sbjct: 181 AQANLIENELVAMIFEVNVIGGSEGWWLDTGAFPHVCHDLSLFRKYNEVKDKNILLGDHH 240

BLAST of CSPI04G09020 vs. NCBI nr
Match: KAA0050409.1 (hypothetical protein E6C27_scaffold1166G00260 [Cucumis melo var. makuwa])

HSP 1 Score: 384.4 bits (986), Expect = 1.1e-102
Identity = 207/340 (60.88%), Postives = 234/340 (68.82%), Query Frame = 0

Query: 93  KVATLCISEEQKIPESSPSKEQVKTHTAWTETNFICNNLILNGLTDELYDYYSTMSIAKE 152
           KVAT C +E+ K+ E  P+KEQ+K  T WTET+FIC NLILNGLTDELYDYYSTM+ AK+
Sbjct: 36  KVATACTTEKPKVSEKDPTKEQLKNLTTWTETDFICKNLILNGLTDELYDYYSTMTTAKQ 95

Query: 153 VWDVLQKKYDTEEARSKKYV-------------------NEIQKKADEIISEGMRLDNQF 212
           VW+ LQKKYDTEEA SKKY                    +EIQK A EII+EGM LD+QF
Sbjct: 96  VWEALQKKYDTEEAGSKKYAVSRYLRYQMTDDRSVEAQSHEIQKIAHEIINEGMPLDDQF 155

Query: 213 QVAVIIDKLPHLWKDFKTTLRHKTKEFSLESLITNCR----------------------- 272
           QV +IIDKL  LWKDFK TLRHKTKEFSLE+L T  R                       
Sbjct: 156 QVTIIIDKLLLLWKDFKNTLRHKTKEFSLENLTTRLRIEEEAKKHDKKEEVNAIPRKKFT 215

Query: 273 -------------------NRNHP--AAQANLVEDEYVAMIFEVNVIGGSGGWWLDTGAY 332
                               +N+P   + ANL+E+E VAMI EVNVIGGS GWWLDTGA 
Sbjct: 216 AVLKSDLKPKGNKMKQGFNKQNNPQSTSMANLIENELVAMISEVNVIGGSEGWWLDTGAS 275

Query: 333 RHVCHDLSLFRKYNEINDKNILLGDHHMTKVAGIGKVELKFTSGKVLVLKKVLHTLGIRK 370
           RHVCHDLS+FRKYNE+ DKNILLGDHH+TKV GI +VELKFTSGK LV+KKVLHT  IRK
Sbjct: 276 RHVCHDLSIFRKYNEVKDKNILLGDHHITKVVGIEEVELKFTSGKTLVMKKVLHTPKIRK 335

BLAST of CSPI04G09020 vs. NCBI nr
Match: TYJ98000.1 (hypothetical protein E5676_scaffold487G00230 [Cucumis melo var. makuwa])

HSP 1 Score: 383.3 bits (983), Expect = 2.5e-102
Identity = 206/340 (60.59%), Postives = 231/340 (67.94%), Query Frame = 0

Query: 93  KVATLCISEEQKIPESSPSKEQVKTHTAWTETNFICNNLILNGLTDELYDYYSTMSIAKE 152
           KVAT C  E+ K+ E  P+KEQ+K  T WTET+FIC NLILNGLTDELYDYYSTM+ AK+
Sbjct: 36  KVATACTIEKPKVSEKDPTKEQLKNLTTWTETDFICKNLILNGLTDELYDYYSTMTTAKQ 95

Query: 153 VWDVLQKKYDTEEARSKKYV-------------------NEIQKKADEIISEGMRLDNQF 212
           VW+ LQKKYDTEEA SKKY                    +EIQK A EII+EGM LD+QF
Sbjct: 96  VWEALQKKYDTEEAGSKKYAVSRYLRYQMTDDRSVEAQSHEIQKIAHEIINEGMPLDDQF 155

Query: 213 QVAVIIDKLPHLWKDFKTTLRHKTKEFSLESLIT-------------------------- 272
           QV +IIDKLP LWKDFK TLRHKTKEFSLE+LIT                          
Sbjct: 156 QVTIIIDKLPLLWKDFKNTLRHKTKEFSLENLITRLKIEEEAKKRDKKKEVNAIPRKKFT 215

Query: 273 ------------------NCRNRNHPAAQANLVEDEYVAMIFEVNVIGGSGGWWLDTGAY 332
                             N +N     + ANL+E+E VAMI EVNVIGGS GWWLDT A 
Sbjct: 216 AVLKSDLKPKGNKMKQGFNKQNNPQSTSMANLIENELVAMISEVNVIGGSEGWWLDTNAS 275

Query: 333 RHVCHDLSLFRKYNEINDKNILLGDHHMTKVAGIGKVELKFTSGKVLVLKKVLHTLGIRK 370
           RHVCHDLS+FRKYNE+ DKNILLGDHH+TKV GI +VEL+FTSGK LVLKKV HT  IRK
Sbjct: 276 RHVCHDLSIFRKYNEVKDKNILLGDHHITKVVGIEEVELRFTSGKTLVLKKVPHTPKIRK 335

BLAST of CSPI04G09020 vs. NCBI nr
Match: KAA0059670.1 (putative Polyprotein [Cucumis melo var. makuwa] >TYK26109.1 putative Polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 342.0 bits (876), Expect = 6.4e-90
Identity = 190/331 (57.40%), Postives = 217/331 (65.56%), Query Frame = 0

Query: 93  KVATLCISEEQKIPESSPSKEQVKTHTAWTETNFICNNLILNGLTDELYDYYSTMSIAKE 152
           KVAT C  E+ K+ E  P+KEQ+ +   WTET+FIC NLILNGLTDELYDYYSTM+ AKE
Sbjct: 40  KVATACTIEKPKVSEKDPTKEQLTSLATWTETDFICKNLILNGLTDELYDYYSTMATAKE 99

Query: 153 VWDVLQKKYDTEEARSKKYVNEIQKKADEIISEGMRLDNQFQVAVIIDKLPHLWKDFKTT 212
           VWDVLQ KYD EE  SKKYV          +S  +R       +V         +DFK T
Sbjct: 100 VWDVLQNKYDIEETGSKKYV----------VSRYLRYQMTDDKSV---------EDFKNT 159

Query: 213 LRHKTKEFSLESLITNCR------------------------------------------ 272
           LRHKTKE SL+SLIT  R                                          
Sbjct: 160 LRHKTKELSLKSLITRLRIEEEARKHNKKEEVNAIPRKKPTAVLKPDLKPKGNKMKRESN 219

Query: 273 NRNHPAAQ--ANLVEDEYVAMIFEVNVIGGSGGWWLDTGAYRHVCHDLSLFRKYNEINDK 332
            +N+P ++  ANL+EDE VAMI EVNVI G  GWWLDTGA  HVCHDLS+FRKYNE+ DK
Sbjct: 220 KQNNPQSRSTANLIEDELVAMISEVNVIRGFEGWWLDTGASHHVCHDLSIFRKYNEVKDK 279

Query: 333 NILLGDHHMTKVAGIGKVELKFTSGKVLVLKKVLHTLGIRKNLVFGYLLYKAGFSQTIGS 380
            ILLGDHH TKVAGIGKVELKFTSGK+LVLK+VLHTL IRKNLV  YLL KAGF+QTIGS
Sbjct: 280 KILLGDHHTTKVAGIGKVELKFTSGKMLVLKEVLHTLEIRKNLVSRYLLNKAGFTQTIGS 339

BLAST of CSPI04G09020 vs. NCBI nr
Match: PON99483.1 (Zinc finger, CCHC-type, partial [Trema orientale])

HSP 1 Score: 334.0 bits (855), Expect = 1.7e-87
Identity = 184/396 (46.46%), Postives = 228/396 (57.58%), Query Frame = 0

Query: 93  KVATLCISEEQKIPESSPSKEQVKTHTAWTETNFICNNLILNGLTDELYDYYSTMSIAKE 152
           KVA +C SE+  +P + P + Q K + +W E +F+C N ILNGL+D+LYDYY++   AKE
Sbjct: 38  KVAYVCTSEKPILP-AEPDERQTKEYESWVEKDFLCKNFILNGLSDDLYDYYNSDKSAKE 97

Query: 153 VWDVLQKKYDTEEARSKKYV-------------------NEIQKKADEIISEGMRLDNQF 212
           +WD LQKKYDTEEA +KKY                    +E+Q  + EIISEGM LD QF
Sbjct: 98  IWDALQKKYDTEEAGTKKYAVSRYLKYQMTDDKSVEVQSHELQMISHEIISEGMSLDEQF 157

Query: 213 QVAVIIDKLPHLWKDFKTTLRHKTKEFSLESLIT-------------------------- 272
           QVAV+IDKLP  WKDFK+ LRHKTKEFSLESLIT                          
Sbjct: 158 QVAVLIDKLPPSWKDFKSVLRHKTKEFSLESLITRLRIEEEARKQDQKDEVLVVSNNKKK 217

Query: 273 ------------------------------------------------------------ 332
                                                                       
Sbjct: 218 STPAVLKPNGKNMKNQNRNRNQNRNNKNQNRNAPQNQNGQQPPSRNDSEQFICYNCNKPG 277

Query: 333 ----NCRNRNHPAAQANLVEDEYVAMIFEVNVIGGSGGWWLDTGAYRHVCHDLSLFRKYN 380
               NCRNR  PA QANL E++ +AMI E+N++GGS GWW+DTGA RHVC++ +LF+ Y+
Sbjct: 278 HMARNCRNRRRPAPQANLTEEQLIAMISEINIVGGSEGWWVDTGASRHVCNNRALFKTYS 337

BLAST of CSPI04G09020 vs. NCBI nr
Match: KAA0067915.1 (putative Polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 327.8 bits (839), Expect = 1.2e-85
Identity = 186/323 (57.59%), Postives = 202/323 (62.54%), Query Frame = 0

Query: 147 MSIAKEVWDVLQKKYDTEEARSKKYV-------------------NEIQKKADEIISEGM 206
           M+ AKEVWD LQKKYDTEEAR KKY                    +EIQK A EIISEGM
Sbjct: 1   MTTAKEVWDTLQKKYDTEEARLKKYAISQYLRYQMTDEKFVEAQSHEIQKIAHEIISEGM 60

Query: 207 RLDNQFQVAVIIDKLPHLWKDFKTTLRHKTKEFSLESLIT-------------------- 266
            LD+QFQVAVIIDKLP LWKDFK TLRHKTKEF LESLIT                    
Sbjct: 61  PLDDQFQVAVIIDKLPPLWKDFKNTLRHKTKEFLLESLITRLMIEEEVRKHDKKEEVNAI 120

Query: 267 ---------------------------------------------------NCRNRNHPA 326
                                                              NCRNR+HP 
Sbjct: 121 PKKKPTVVLKSDLKPKGNKMKRGSNKQNNPQSKSTVQIVCYNCNKLGHLARNCRNRSHPV 180

Query: 327 AQANLVEDEYVAMIFEVNVIGGSGGWWLDTGAYRHVCHDLSLFRKYNEINDKNILLGDHH 380
           AQANL+E+E VAMIFEVNVIGGS GWWLDTGA+ HVCHDLSLFRKYNE+ DKNILLGDHH
Sbjct: 181 AQANLIENELVAMIFEVNVIGGSEGWWLDTGAFPHVCHDLSLFRKYNEVKDKNILLGDHH 240

BLAST of CSPI04G09020 vs. TAIR 10
Match: AT4G00980.1 (zinc knuckle (CCHC-type) family protein )

HSP 1 Score: 63.9 bits (154), Expect = 3.1e-10
Identity = 43/130 (33.08%), Postives = 61/130 (46.92%), Query Frame = 0

Query: 106 PESSPSK--EQVKTHTAWTETNFICNNLILNGLTDELYDYYS-TMSIAKEVWDVLQKKYD 165
           PE++P +      T   W   +++C   ++N L+D LY  YS     AKE+WD L+  Y 
Sbjct: 236 PETNPREITRADATGKKWLRDDYLCYTHLMNSLSDHLYRRYSQKFKHAKELWDELKWVYQ 295

Query: 166 TEEARSKK-------------------YVNEIQKKADEIISEGMRLDNQFQVAVIIDKLP 214
            +E++SK+                    V    K AD I+S GM LD  F V+ II K P
Sbjct: 296 CDESKSKRSQVRKYIEFRMVEERPILEQVQVFNKIADSIVSAGMFLDEAFHVSTIISKFP 355

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P109782.9e-0828.23Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Match NameE-valueIdentityDescription
A0A5A7UA925.4e-10360.88Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BDS31.2e-10260.59Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DRT23.1e-9057.40Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111... [more]
A0A2P5FP198.4e-8846.46Zinc finger, CCHC-type (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_0465... [more]
A0A5A7VQD46.0e-8657.59Putative Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138... [more]
Match NameE-valueIdentityDescription
KAA0050409.11.1e-10260.88hypothetical protein E6C27_scaffold1166G00260 [Cucumis melo var. makuwa][more]
TYJ98000.12.5e-10260.59hypothetical protein E5676_scaffold487G00230 [Cucumis melo var. makuwa][more]
KAA0059670.16.4e-9057.40putative Polyprotein [Cucumis melo var. makuwa] >TYK26109.1 putative Polyprotein... [more]
PON99483.11.7e-8746.46Zinc finger, CCHC-type, partial [Trema orientale][more]
KAA0067915.11.2e-8557.59putative Polyprotein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
AT4G00980.13.1e-1033.08zinc knuckle (CCHC-type) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR47592:SF5OS08G0421300 PROTEINcoord: 244..361
NoneNo IPR availablePANTHERPTHR47592:SF5OS08G0421300 PROTEINcoord: 101..236
NoneNo IPR availablePANTHERPTHR47592PBF68 PROTEINcoord: 244..361
NoneNo IPR availablePANTHERPTHR47592PBF68 PROTEINcoord: 101..236

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G09020.1CSPI04G09020.1mRNA