CSPI04G06690 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G06690
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	C2H2-type domain-containing protein
Location	Chr4: 4692965 .. 4695039 (-)
RNA-Seq Expression	CSPI04G06690
Synteny	CSPI04G06690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAGAAGAAGAAGAAGAAGAAAAAGAGAATTAAAGGAAAAGGGCAATGAAGAAGAGGGAATGTGGGGAGGGGATAAGTTTTGTGTCTAAATTGGGTCAACTTATTTTCTTTCAGTAATTATTTATTTATTTATCATTCCTAAAATTAAAATAAATAAAACCAATCATTCTTGTGATCGGAATTTCTCTAGTCGGACTCAGATCCTCCGCTTCTTCTTCTTCTTCTTCTCGAAATCTTGAACGGAGAAGATGACTCGAGGAAAGCAGAAGATCGAAGCTCAGAAACGAAATGCGGAGAAAAATCAGAAGCCCAAAGGCTCTCAGCTCGAGGCCAGAGCCGTTGCCCTTAAAGTCATCTGCCCGATTTGCAAGGTTCCTTTTTCTTTGCTTCAATCTTTCTTTCTTTCTTTCTTATAATTGTATTCCTTTGGATTTTAGTGTTCTTCCTCTCTTTTAATCTGTATCGTAATCGTACTCCTGTTTTGATGTCATAACAACTGCCAACCCCATATTCAATTATCATTTTTCCGTTCTTATGTATAGTGCACTTGATATGGCTGTGCGTTGGTTTCAATTGATATGAAATTCGTTGGAGTTTCATTAGTTTTTTGTCTTCTTTTCTCAAGGCTTGAGTACATAGATTATTTTCACGGATCATTTATTCTAGGGTTTGAAAGAATTCGAAATGGTTTTGTTTACTGGAAATTTTTTAAGCGTTAATTCTAGATGATAGTGAGGTTTGAGTTATACATATAGTACAATCTATTGTGACCAACTACTTGAGATACCGATTAGAAACTATGATACATTATTTTCTGTGTTGCTATGATCTTGTCTTGAGAAATTTTCTTGTTGCAAGAATTGCTGTATGGTTATGTGTTTGTTTGGGCGGATTAGTCAAATTATGCTTGAGTTGAGATTGTTGGGGGAAAAAAATACTCGATAGGATAGACTATAGAGGGAACCTGATGAGGATTTCTCTTTTTGTTTACTCCTTTGGACAACTAAGAAACGGAGAAGTATATGCCACAAGAAAGGGAGACAACAAATTAGAGGATAGGATTGAGGGAACCCTGCCTTAAAAGAGGCGAAAGGAATATTATAAAAAGAGATCCTTCCCATTGTTAATAATCATTAGAAGACTAACAAAAAACGAAAAAGCGAGTGATTAAAACACCAACCAGAGGCCAAACAACTGCAGATGATTAAAAGAAGTATCATAGGAAATAATCTTATTTTCAAAGATTATGCCTTTGGAACCTCGGCCCCTTGGAGCTTCTTCTACCAGCCAATCAATGAGCAAGGTGGCAATGGGGAAAACAAATGATTCACATATGCACCATCTCTAAAAACAAACGACGGGGGATGAGATCCATCTTGAGTGTCCATCTTGGGACGTTGATAATGTTGAGTTTGTCTTTTGTGGGTTAATCTGCTGTGGATTGATTTTTCTCTTGGCTTGTGGGACGAAGTCATAGAGACTCTAAATATTGAATTCAACATAGAAGAGAGTGGAATAATGATAGGAAATTAGATATGAATTTGTTTATCCTTGCTTTTGATACTTGAAAGTATATCTGTTCTTCCCCCACGACCGTGTATTTGATCATCTATTTTCTTTTATTCTAACCTCAGGTACAACTTGCAAATCAGAACCAGTTGGGTGATCATTATGGCTCCAAACATCCAAAGGAAAAGCCCCCATCAGAATCTGGTTGAATCTTCGCTTGCAATTTGAAGTATGAGTGTTGCTTTATTGAAGGCATTTCACAGTTCTCTTCTGTTCAGATCAATGAAAAAATTTCTCTGATCGTCTTCAACTTTCCTGTTCTTAAAATGTATTACTTGTAAGGGTAAAAAACGATTGGTCATTCTGTCACTTGTAAAATAAAAATAGACTCTAATATGCTCTTTTCCAGATCCTCAATCTAATATCTCCTCTGTGCCTATAAAATATCGAATCCTAAGAAATGTTTTCTTTTTTTTTTGTACATTATCAACTAAATAACATGTATCGAGTGATGGAGATGGAAGGTAGTAAGATCCTTAATTCAAGCTGCACTTAGTGAAGGGGA

mRNA sequence

CAAAGAAGAAGAAGAAGAAGAAAAAGAGAATTAAAGGAAAAGGGCAATGAAGAAGAGGGAATGTGGGGAGGGGATAAGTTTTGTGTCTAAATTGGGTCAACTTATTTTCTTTCAGTAATTATTTATTTATTTATCATTCCTAAAATTAAAATAAATAAAACCAATCATTCTTGTGATCGGAATTTCTCTAGTCGGACTCAGATCCTCCGCTTCTTCTTCTTCTTCTTCTCGAAATCTTGAACGGAGAAGATGACTCGAGGAAAGCAGAAGATCGAAGCTCAGAAACGAAATGCGGAGAAAAATCAGAAGCCCAAAGGCTCTCAGCTCGAGGCCAGAGCCGTTGCCCTTAAAGTCATCTGCCCGATTTGCAAGGTACAACTTGCAAATCAGAACCAGTTGGGTGATCATTATGGCTCCAAACATCCAAAGGAAAAGCCCCCATCAGAATCTGGTTGAATCTTCGCTTGCAATTTGAAGTATGAGTGTTGCTTTATTGAAGGCATTTCACAGTTCTCTTCTGTTCAGATCAATGAAAAAATTTCTCTGATCGTCTTCAACTTTCCTGTTCTTAAAATGTATTACTTGTAAGGGTAAAAAACGATTGGTCATTCTGTCACTTGTAAAATAAAAATAGACTCTAATATGCTCTTTTCCAGATCCTCAATCTAATATCTCCTCTGTGCCTATAAAATATCGAATCCTAAGAAATGTTTTCTTTTTTTTTTGTACATTATCAACTAAATAACATGTATCGAGTGATGGAGATGGAAGGTAGTAAGATCCTTAATTCAAGCTGCACTTAGTGAAGGGGA

Coding sequence (CDS)

ATGACTCGAGGAAAGCAGAAGATCGAAGCTCAGAAACGAAATGCGGAGAAAAATCAGAAGCCCAAAGGCTCTCAGCTCGAGGCCAGAGCCGTTGCCCTTAAAGTCATCTGCCCGATTTGCAAGGTACAACTTGCAAATCAGAACCAGTTGGGTGATCATTATGGCTCCAAACATCCAAAGGAAAAGCCCCCATCAGAATCTGGTTGA

Protein sequence

MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYGSKHPKEKPPSESG*

Homology

[Close]

BLAST of CSPI04G06690 vs. ExPASy Swiss-Prot
Match: Q5ZMM5 (Zinc finger protein 706 OS=Gallus gallus OX=9031 GN=ZNF706 PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.3e-04
Identity = 26/70 (37.14%), Postives = 38/70 (54.29%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEKNQKPK----GSQLEARAVALKVICPICKVQLANQNQLGDHYGS 60
          M RG+QKI++Q++NA+K  + K      Q  A   AL   C +C+ Q+ +      H+ S
Sbjct: 1  MARGQQKIQSQQKNAKKQAEQKKKQGHDQKAAAKAALIYTCTVCRTQMPDPKTFKQHFES 60

Query: 61 KHPKEKPPSE 67
          KHPK   P E
Sbjct: 61 KHPKTPLPPE 70

[Close]

BLAST of CSPI04G06690 vs. ExPASy Swiss-Prot
Match: Q9Y5V0 (Zinc finger protein 706 OS=Homo sapiens OX=9606 GN=ZNF706 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.3e-04
Identity = 27/70 (38.57%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEK---NQKPKGSQLEARA-VALKVICPICKVQLANQNQLGDHYGS 60
          M RG+QKI++Q++NA+K    +K +G   +A A  AL   C +C+ Q+ +      H+ S
Sbjct: 1  MARGQQKIQSQQKNAKKQAGQKKKQGHDQKAAAKAALIYTCTVCRTQMPDPKTFKQHFES 60

Query: 61 KHPKEKPPSE 67
          KHPK   P E
Sbjct: 61 KHPKTPLPPE 70

[Close]

BLAST of CSPI04G06690 vs. ExPASy Swiss-Prot
Match: Q9D115 (Zinc finger protein 706 OS=Mus musculus OX=10090 GN=Znf706 PE=1 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 2.3e-04
Identity = 27/70 (38.57%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEK---NQKPKGSQLEARA-VALKVICPICKVQLANQNQLGDHYGS 60
          M RG+QKI++Q++NA+K    +K +G   +A A  AL   C +C+ Q+ +      H+ S
Sbjct: 1  MARGQQKIQSQQKNAKKQAGQKKKQGHDQKAAAKAALIYTCTVCRTQMPDPKTFKQHFES 60

Query: 61 KHPKEKPPSE 67
          KHPK   P E
Sbjct: 61 KHPKTPLPPE 70

[Close]

BLAST of CSPI04G06690 vs. ExPASy TrEMBL
Match: A0A5D3CZW8 (Zinc finger protein 706-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003120 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 4.7e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYGSKHPK 60
          MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYGSKHPK
Sbjct: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYGSKHPK 60

Query: 61 EKPPSESG 69
          EKPPSESG
Sbjct: 61 EKPPSESG 68

[Close]

BLAST of CSPI04G06690 vs. ExPASy TrEMBL
Match: A0A068VFB0 (C2H2-type domain-containing protein OS=Coffea canephora OX=49390 GN=GSCOC_T00004475001 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.8e-26
Identity = 62/68 (91.18%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYGSKHPK 60
          MTRGKQKIEAQKR AE+NQKPKGSQLEARAVALKV+CPICKVQLAN+NQL DHYGSKHPK
Sbjct: 1  MTRGKQKIEAQKRKAERNQKPKGSQLEARAVALKVVCPICKVQLANENQLNDHYGSKHPK 60

Query: 61 EKPPSESG 69
          EKPPS SG
Sbjct: 61 EKPPSNSG 68

[Close]

BLAST of CSPI04G06690 vs. ExPASy TrEMBL
Match: D7TFG3 (C2H2-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_02s0087g00160 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 3.7e-26
Identity = 61/68 (89.71%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYGSKHPK 60
          MTRGKQKIEAQ+RNAE+NQKPKGSQ EARAVALK+ CPICKVQLANQNQLGDHY SKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQFEARAVALKITCPICKVQLANQNQLGDHYSSKHPK 60

Query: 61 EKPPSESG 69
          EKPPS+SG
Sbjct: 61 EKPPSDSG 68

[Close]

BLAST of CSPI04G06690 vs. ExPASy TrEMBL
Match: B9S1M3 (C2H2-type domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_0866530 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 6.3e-26
Identity = 62/67 (92.54%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYGSKHPK 60
          MTRGKQKIEAQ+RNAE+NQKPKGSQLEARAVALKVICPICK QLAN NQLGDHY SKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQLEARAVALKVICPICKTQLANHNQLGDHYASKHPK 60

Query: 61 EKPPSES 68
          EKPPSES
Sbjct: 61 EKPPSES 67

[Close]

BLAST of CSPI04G06690 vs. ExPASy TrEMBL
Match: A0A2I0IJ83 (C2H2-type domain-containing protein OS=Punica granatum OX=22663 GN=CRG98_035562 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 6.3e-26
Identity = 63/68 (92.65%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYGSKHPK 60
          MTRGKQKIEAQKRNAE+NQKPK SQLEARAV LKVICPICKVQLAN NQL DHYGSKHPK
Sbjct: 1  MTRGKQKIEAQKRNAERNQKPKASQLEARAVGLKVICPICKVQLANHNQLVDHYGSKHPK 60

Query: 61 EKPPSESG 69
          EKPPSESG
Sbjct: 61 EKPPSESG 68

[Close]

BLAST of CSPI04G06690 vs. NCBI nr
Match: TYK16504.1 (zinc finger protein 706-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 136.3 bits (342), Expect = 9.7e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYGSKHPK 60
          MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYGSKHPK
Sbjct: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYGSKHPK 60

Query: 61 EKPPSESG 69
          EKPPSESG
Sbjct: 61 EKPPSESG 68

[Close]

BLAST of CSPI04G06690 vs. NCBI nr
Match: KAG6600413.1 (hypothetical protein SDJN03_05646, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031072.1 hypothetical protein SDJN02_05111, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 128.3 bits (321), Expect = 2.6e-26
Identity = 64/67 (95.52%), Postives = 64/67 (95.52%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYGSKHPK 60
          MTRGKQKIEAQKRNAEKNQKPKGSQ EARAVALKVICPICKVQLAN NQLGDHY SKHPK
Sbjct: 1  MTRGKQKIEAQKRNAEKNQKPKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60

Query: 61 EKPPSES 68
          EKPPSES
Sbjct: 61 EKPPSES 67

[Close]

BLAST of CSPI04G06690 vs. NCBI nr
Match: CDP19520.1 (unnamed protein product [Coffea canephora])

HSP 1 Score: 127.1 bits (318), Expect = 5.9e-26
Identity = 62/68 (91.18%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYGSKHPK 60
          MTRGKQKIEAQKR AE+NQKPKGSQLEARAVALKV+CPICKVQLAN+NQL DHYGSKHPK
Sbjct: 1  MTRGKQKIEAQKRKAERNQKPKGSQLEARAVALKVVCPICKVQLANENQLNDHYGSKHPK 60

Query: 61 EKPPSESG 69
          EKPPS SG
Sbjct: 61 EKPPSNSG 68

[Close]

BLAST of CSPI04G06690 vs. NCBI nr
Match: CBI29236.3 (unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 126.7 bits (317), Expect = 7.7e-26
Identity = 61/68 (89.71%), Postives = 65/68 (95.59%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYGSKHPK 60
          MTRGKQKIEAQ+RNAE+NQKPKGSQ EARAVALK+ CPICKVQLANQNQLGDHY SKHPK
Sbjct: 1  MTRGKQKIEAQRRNAERNQKPKGSQFEARAVALKITCPICKVQLANQNQLGDHYSSKHPK 60

Query: 61 EKPPSESG 69
          EKPPS+SG
Sbjct: 61 EKPPSDSG 68

[Close]

BLAST of CSPI04G06690 vs. NCBI nr
Match: KAG7015122.1 (hypothetical protein SDJN02_22755 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 126.3 bits (316), Expect = 1.0e-25
Identity = 63/68 (92.65%), Postives = 64/68 (94.12%), Query Frame = 0


Query: 1  MTRGKQKIEAQKRNAEKNQKPKGSQLEARAVALKVICPICKVQLANQNQLGDHYGSKHPK 60
          MTRGKQKIEAQ+RNAEKNQK KGSQ EARAVALKVICPICKVQLAN NQLGDHY SKHPK
Sbjct: 1  MTRGKQKIEAQRRNAEKNQKQKGSQFEARAVALKVICPICKVQLANHNQLGDHYASKHPK 60

Query: 61 EKPPSESG 69
          EKPPSESG
Sbjct: 61 EKPPSESG 68

The following BLAST results are available for this feature:

BLAST of CSPI04G06690 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5ZMM5	2.3e-04	37.14	Zinc finger protein 706 OS=Gallus gallus OX=9031 GN=ZNF706 PE=3 SV=1	[more]
Q9Y5V0	2.3e-04	38.57	Zinc finger protein 706 OS=Homo sapiens OX=9606 GN=ZNF706 PE=1 SV=1	[more]
Q9D115	2.3e-04	38.57	Zinc finger protein 706 OS=Mus musculus OX=10090 GN=Znf706 PE=1 SV=1	[more]

BLAST of CSPI04G06690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CZW8	4.7e-29	100.00	Zinc finger protein 706-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A068VFB0	2.8e-26	91.18	C2H2-type domain-containing protein OS=Coffea canephora OX=49390 GN=GSCOC_T00004...	[more]
D7TFG3	3.7e-26	89.71	C2H2-type domain-containing protein OS=Vitis vinifera OX=29760 GN=VIT_02s0087g00...	[more]
B9S1M3	6.3e-26	92.54	C2H2-type domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_0866530 ...	[more]
A0A2I0IJ83	6.3e-26	92.65	C2H2-type domain-containing protein OS=Punica granatum OX=22663 GN=CRG98_035562 ...	[more]

BLAST of CSPI04G06690 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK16504.1	9.7e-29	100.00	zinc finger protein 706-like protein [Cucumis melo var. makuwa]	[more]
KAG6600413.1	2.6e-26	95.52	hypothetical protein SDJN03_05646, partial [Cucurbita argyrosperma subsp. sorori...	[more]
CDP19520.1	5.9e-26	91.18	unnamed protein product [Coffea canephora]	[more]
CBI29236.3	7.7e-26	89.71	unnamed protein product, partial [Vitis vinifera]	[more]
KAG7015122.1	1.0e-25	92.65	hypothetical protein SDJN02_22755 [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of CSPI04G06690 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007513	Uncharacterised protein family SERF, N-terminal	PFAM	PF04419	4F5	coord: 1..28 e-value: 1.6E-5 score: 25.7
None	No IPR available	PFAM	PF12874	zf-met	coord: 37..57 e-value: 1.2E-4 score: 22.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR21213	GEO09665P1-RELATED	coord: 1..66
None	No IPR available	PANTHER	PTHR21213:SF0	GEO09665P1-RELATED	coord: 1..66
None	No IPR available	SUPERFAMILY	118359	Expressed protein At2g23090/F21P24.15	coord: 1..64
IPR026939	ZNF706/At2g23090 superfamily	GENE3D	4.10.1050.10		coord: 1..66 e-value: 1.1E-18 score: 69.4
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 37..58

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G06690.1	CSPI04G06690.1	mRNA