CSPI04G06490 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G06490
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionMuDRA-like transposase
LocationChr4: 4509518 .. 4509706 (+)
RNA-Seq ExpressionCSPI04G06490
SyntenyCSPI04G06490
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTTGAGACGTTTGAGGAATCTGAGACAGATGTTAGTCCTCATTCTGAAAATCATATGCAATTGATAAACGATCATATATCGATTGCAACAAATGTTGAATGTCCGTTTAGTGTAGAATCAAGTGAAGAAAGAGGACATGTGGGTGATAGAAACCCAACTCGGGATGATCAGTCGATGTGTTAG

mRNA sequence

ATGGATGTTGAGACGTTTGAGGAATCTGAGACAGATGTTAGTCCTCATTCTGAAAATCATATGCAATTGATAAACGATCATATATCGATTGCAACAAATGTTGAATGTCCGTTTAGTGTAGAATCAAGTGAAGAAAGAGGACATGTGGGTGATAGAAACCCAACTCGGGATGATCAGTCGATGTGTTAG

Coding sequence (CDS)

ATGGATGTTGAGACGTTTGAGGAATCTGAGACAGATGTTAGTCCTCATTCTGAAAATCATATGCAATTGATAAACGATCATATATCGATTGCAACAAATGTTGAATGTCCGTTTAGTGTAGAATCAAGTGAAGAAAGAGGACATGTGGGTGATAGAAACCCAACTCGGGATGATCAGTCGATGTGTTAG

Protein sequence

MDVETFEESETDVSPHSENHMQLINDHISIATNVECPFSVESSEERGHVGDRNPTRDDQSMC*
Homology
[Close]
BLAST of CSPI04G06490 vs. ExPASy TrEMBL
Match: A0A0A0KV41 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052680 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.3e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MDVETFEESETDVSPHSENHMQLINDHISIATNVECPFSVESSEERGHVGDRNPTRDDQS 60
          MDVETFEESETDVSPHSENHMQLINDHISIATNVECPFSVESSEERGHVGDRNPTRDDQS
Sbjct: 1  MDVETFEESETDVSPHSENHMQLINDHISIATNVECPFSVESSEERGHVGDRNPTRDDQS 60

Query: 61 MC 63
          MC
Sbjct: 61 MC 62

[Close]
BLAST of CSPI04G06490 vs. ExPASy TrEMBL
Match: A0A5D3BLG3 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold474G00160 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 6.4e-09
Identity = 36/60 (60.00%), Postives = 44/60 (73.33%), Query Frame = 0 

Query: 1  MDVETFEESETDVSPHSENHMQLINDHISIATNVECPFSVESSEERGHVGDRNPTRDDQS 60
          + V+ FE SE +V     NH++LI+D I +AT VEC FSVESSEERG+VGD N T DDQS
Sbjct: 11 ISVKVFEVSEVNVRIRPANHIELIDDRIPMATVVECTFSVESSEERGYVGDSNLTYDDQS 70

[Close]
BLAST of CSPI04G06490 vs. NCBI nr
Match: KGN53418.1 (hypothetical protein Csa_015111 [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 4.9e-27
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0 

Query: 1  MDVETFEESETDVSPHSENHMQLINDHISIATNVECPFSVESSEERGHVGDRNPTRDDQS 60
          MDVETFEESETDVSPHSENHMQLINDHISIATNVECPFSVESSEERGHVGDRNPTRDDQS
Sbjct: 1  MDVETFEESETDVSPHSENHMQLINDHISIATNVECPFSVESSEERGHVGDRNPTRDDQS 60

Query: 61 MC 63
          MC
Sbjct: 61 MC 62

[Close]
BLAST of CSPI04G06490 vs. NCBI nr
Match: KAA0048398.1 (MuDRA-like transposase [Cucumis melo var. makuwa] >TYJ99874.1 MuDRA-like transposase [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 1.3e-08
Identity = 36/60 (60.00%), Postives = 44/60 (73.33%), Query Frame = 0 

Query: 1  MDVETFEESETDVSPHSENHMQLINDHISIATNVECPFSVESSEERGHVGDRNPTRDDQS 60
          + V+ FE SE +V     NH++LI+D I +AT VEC FSVESSEERG+VGD N T DDQS
Sbjct: 11 ISVKVFEVSEVNVRIRPANHIELIDDRIPMATVVECTFSVESSEERGYVGDSNLTYDDQS 70

The following BLAST results are available for this feature:
BLAST of CSPI04G06490 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI04G06490 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KV412.3e-27100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052680 PE=4 SV=1[more]
A0A5D3BLG36.4e-0960.00MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold4... [more]
BLAST of CSPI04G06490 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN53418.14.9e-27100.00hypothetical protein Csa_015111 [Cucumis sativus][more]
KAA0048398.11.3e-0860.00MuDRA-like transposase [Cucumis melo var. makuwa] >TYJ99874.1 MuDRA-like transpo... [more]
BLAST of CSPI04G06490 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..62
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..62

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G06490.1CSPI04G06490.1mRNA