CSPI04G04850 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G04850
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Mitochondrial transcription termination factor family protein
Location	Chr4: 3226669 .. 3228216 (-)
RNA-Seq Expression	CSPI04G04850
Synteny	CSPI04G04850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGGGCTAAATTTGTAATTTAAACTTTTAGAAAAGTTGAATCGGAGAAGATGAGGGATGGAAGCGACGGAGAGAAGAAAAACGGGAGAAGCTTTTGAGAAACGCCGCCTCCTTAAACCCTAAAATTTCTATGCTTTTCAGCTCTTAAATTAAATGTACGCTATGTATCCATCATTCTCTGTTTGTGTTCCCTCTCCTCTTAATCCTCCTTTCTTCCTCCGACTAATTCATCCATTCTTGTTTTCTTTCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCCCACTCCCAACCACCCTCTCATTCCTATGGAATCGTCCTCCAATACCTCATCGATACCTTCCAACTCTCCCCCGCCAGAGCCGTCTCCATTATGGCTACCCGTAGAGGCATTCAATCAACTGAAAAGCCTCGTTCCGTTTACAAATATCTTTCGGACCTCGGATTATCCGACACCCAAATTAAATCAGCCGTTCGAATCACACCCCAAATCGCGTTTTCCAGCATTGAGAAAACACTGAAGCCAAAGATCGAGTTCTTACAGAATCTTGGCTTTGTTGGCTCAGATTTGAGTAAGTTCATTTCCAGGCAATCTAAATTTTTTTCTTCTAGTTTGGAAAAGACATTGATGCCCAATGTTGAGATTCTTAAGAATGTTTTGCCCAAGGGTACGTGTAATGACGATCTCCCGAAAGTTTTGCGGCGATGTTCTGATGTACTAACGAGATCCCCGTATAAAGTGTTGTCTGTAAATATCAATTACTTACGAAGTTGTGGGATTGTTGACTATCAACTCTCTACGTTATTGAAGCGACAACCTGCACTTTTTATTATGCATGAATCTCGACTTAAAGATTTTGTTTCAATGGCTGTAAAGGCTGGTTTTTCTCCCAACGGTACAATGTTTATTCATGGACTTCATTCTATCAGTAGTATAAGTAATGCAACTTATAAGAAGAAAGTGAAGCTGATTTGTAGTTTTGGAATAACTGAGAAAGAATGTATGAGAATGTTTAATTCGGCTCCTGTTTTGATGAGGACTTCCGTTGGTAAACTTGAGGTTGGTCTAGAATTCTTCATGAATGAGGCAAAAGTTAGCAAATCAGATATTGTTCGTAATCCTTTTTGTTTGATGCACGCAATGCATGGAAGGGTGCTCCCTCGTTATAGAGTTCTAGAGGTTTTGAAGTCGAAGAGGCTAACGAAGAAGCTCCCGAAGTTGATCGATTCATTGTGGATGCCTGATGAGGATTTCTTAGATAAATTCGTTCGTAGGTTTCCTGACAATATGAATGATTTGTTTGAGGCCTTTAGAGGTAATTCGAGGAGATAGCAACATGAAGATGGGGCAAGAACTAGAGCTAGTTTGATCTAACATTTGGTCAATACCTTGAGAACGAGTGGTCGGGGTTGGAAGGTGTTTTGATCATAGTGAGCTCTTGATTCCTCCTTTTCATGTTAGGATGGTCTCTCTCTATCCCACATTGTATGTGCTACTATGGTGAATGTACTTGGATTAAAGCTTCACATTACAAAACACAACTATTTTGCAT

mRNA sequence

TGGGGCTAAATTTGTAATTTAAACTTTTAGAAAAGTTGAATCGGAGAAGATGAGGGATGGAAGCGACGGAGAGAAGAAAAACGGGAGAAGCTTTTGAGAAACGCCGCCTCCTTAAACCCTAAAATTTCTATGCTTTTCAGCTCTTAAATTAAATGTACGCTATGTATCCATCATTCTCTGTTTGTGTTCCCTCTCCTCTTAATCCTCCTTTCTTCCTCCGACTAATTCATCCATTCTTGTTTTCTTTCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCCCACTCCCAACCACCCTCTCATTCCTATGGAATCGTCCTCCAATACCTCATCGATACCTTCCAACTCTCCCCCGCCAGAGCCGTCTCCATTATGGCTACCCGTAGAGGCATTCAATCAACTGAAAAGCCTCGTTCCGTTTACAAATATCTTTCGGACCTCGGATTATCCGACACCCAAATTAAATCAGCCGTTCGAATCACACCCCAAATCGCGTTTTCCAGCATTGAGAAAACACTGAAGCCAAAGATCGAGTTCTTACAGAATCTTGGCTTTGTTGGCTCAGATTTGAGTAAGTTCATTTCCAGGCAATCTAAATTTTTTTCTTCTAGTTTGGAAAAGACATTGATGCCCAATGTTGAGATTCTTAAGAATGTTTTGCCCAAGGGTACGTGTAATGACGATCTCCCGAAAGTTTTGCGGCGATGTTCTGATGTACTAACGAGATCCCCGTATAAAGTGTTGTCTGTAAATATCAATTACTTACGAAGTTGTGGGATTGTTGACTATCAACTCTCTACGTTATTGAAGCGACAACCTGCACTTTTTATTATGCATGAATCTCGACTTAAAGATTTTGTTTCAATGGCTGTAAAGGCTGGTTTTTCTCCCAACGGTACAATGTTTATTCATGGACTTCATTCTATCAGTAGTATAAGTAATGCAACTTATAAGAAGAAAGTGAAGCTGATTTGTAGTTTTGGAATAACTGAGAAAGAATGTATGAGAATGTTTAATTCGGCTCCTGTTTTGATGAGGACTTCCGTTGGTAAACTTGAGGTTGGTCTAGAATTCTTCATGAATGAGGCAAAAGTTAGCAAATCAGATATTGTTCGTAATCCTTTTTGTTTGATGCACGCAATGCATGGAAGGGTGCTCCCTCGTTATAGAGTTCTAGAGGTTTTGAAGTCGAAGAGGCTAACGAAGAAGCTCCCGAAGTTGATCGATTCATTGTGGATGCCTGATGAGGATTTCTTAGATAAATTCGTTCGTAGGTTTCCTGACAATATGAATGATTTGTTTGAGGCCTTTAGAGGTAATTCGAGGAGATAGCAACATGAAGATGGGGCAAGAACTAGAGCTAGTTTGATCTAACATTTGGTCAATACCTTGAGAACGAGTGGTCGGGGTTGGAAGGTGTTTTGATCATAGTGAGCTCTTGATTCCTCCTTTTCATGTTAGGATGGTCTCTCTCTATCCCACATTGTATGTGCTACTATGGTGAATGTACTTGGATTAAAGCTTCACATTACAAAACACAACTATTTTGCAT

Coding sequence (CDS)

ATGTACGCTATGTATCCATCATTCTCTGTTTGTGTTCCCTCTCCTCTTAATCCTCCTTTCTTCCTCCGACTAATTCATCCATTCTTGTTTTCTTTCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCCCACTCCCAACCACCCTCTCATTCCTATGGAATCGTCCTCCAATACCTCATCGATACCTTCCAACTCTCCCCCGCCAGAGCCGTCTCCATTATGGCTACCCGTAGAGGCATTCAATCAACTGAAAAGCCTCGTTCCGTTTACAAATATCTTTCGGACCTCGGATTATCCGACACCCAAATTAAATCAGCCGTTCGAATCACACCCCAAATCGCGTTTTCCAGCATTGAGAAAACACTGAAGCCAAAGATCGAGTTCTTACAGAATCTTGGCTTTGTTGGCTCAGATTTGAGTAAGTTCATTTCCAGGCAATCTAAATTTTTTTCTTCTAGTTTGGAAAAGACATTGATGCCCAATGTTGAGATTCTTAAGAATGTTTTGCCCAAGGGTACGTGTAATGACGATCTCCCGAAAGTTTTGCGGCGATGTTCTGATGTACTAACGAGATCCCCGTATAAAGTGTTGTCTGTAAATATCAATTACTTACGAAGTTGTGGGATTGTTGACTATCAACTCTCTACGTTATTGAAGCGACAACCTGCACTTTTTATTATGCATGAATCTCGACTTAAAGATTTTGTTTCAATGGCTGTAAAGGCTGGTTTTTCTCCCAACGGTACAATGTTTATTCATGGACTTCATTCTATCAGTAGTATAAGTAATGCAACTTATAAGAAGAAAGTGAAGCTGATTTGTAGTTTTGGAATAACTGAGAAAGAATGTATGAGAATGTTTAATTCGGCTCCTGTTTTGATGAGGACTTCCGTTGGTAAACTTGAGGTTGGTCTAGAATTCTTCATGAATGAGGCAAAAGTTAGCAAATCAGATATTGTTCGTAATCCTTTTTGTTTGATGCACGCAATGCATGGAAGGGTGCTCCCTCGTTATAGAGTTCTAGAGGTTTTGAAGTCGAAGAGGCTAACGAAGAAGCTCCCGAAGTTGATCGATTCATTGTGGATGCCTGATGAGGATTTCTTAGATAAATTCGTTCGTAGGTTTCCTGACAATATGAATGATTTGTTTGAGGCCTTTAGAGGTAATTCGAGGAGATAG

Protein sequence

MYAMYPSFSVCVPSPLNPPFFLRLIHPFLFSFFSSSSSSSSSHSQPPSHSYGIVLQYLIDTFQLSPARAVSIMATRRGIQSTEKPRSVYKYLSDLGLSDTQIKSAVRITPQIAFSSIEKTLKPKIEFLQNLGFVGSDLSKFISRQSKFFSSSLEKTLMPNVEILKNVLPKGTCNDDLPKVLRRCSDVLTRSPYKVLSVNINYLRSCGIVDYQLSTLLKRQPALFIMHESRLKDFVSMAVKAGFSPNGTMFIHGLHSISSISNATYKKKVKLICSFGITEKECMRMFNSAPVLMRTSVGKLEVGLEFFMNEAKVSKSDIVRNPFCLMHAMHGRVLPRYRVLEVLKSKRLTKKLPKLIDSLWMPDEDFLDKFVRRFPDNMNDLFEAFRGNSRR*

Homology

[Close]

BLAST of CSPI04G04850 vs. ExPASy Swiss-Prot
Match: F4JVI3 (Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF5 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 5.4e-10
Identity = 65/284 (22.89%), Postives = 125/284 (44.01%), Query Frame = 0


Query: 60  DTFQLSPARAVSIMATRRGIQSTEKPRSVYKYLSDLGLSDTQIKSAVRITPQIAFSSIEK 119
           DT +L     VS + T   +    +P+++  YL DLGL+  QIK+  R      + S++ 
Sbjct: 177 DTRKLRAVSRVSELDTEGAL----RPQTL--YLLDLGLNLEQIKTITRKFAAFPYYSLDG 236

Query: 120 TLKPKIEFLQNLGFVGSDLSKFISRQSKFFSSSLEKTLMPNVEILKNVLPKGTCNDDLPK 179
            +KP +EFL +LG   SD+   + ++ +    SL   L P +  L+ +   G   +   K
Sbjct: 237 KIKPVVEFLLDLGIPKSDIPTILCKRPQICGISLTDNLKPTMAFLETL---GIDKNQWAK 296

Query: 180 VLRRCSDVLTRSPYKVLSVNINYLRSCGIVDYQLSTLLKRQPALFIMH-ESRLKDFVSMA 239
           ++ R   +LT S  K+ S  + +L   G+ + Q+  +L R P +     E +L+   +M 
Sbjct: 297 IISRFPAILTYSRQKLTS-TVEFLSQTGLTEEQIGRILTRCPNIMSYSVEDKLRP--TME 356

Query: 240 VKAGFSPNGTMFIHGLHSISSIS-NATYKKKVKLICSFGITEKECMRMFNSAPVLMRTSV 299
                + +  + +H       +S  +  K   +     G    E   M +    L   S+
Sbjct: 357 YFRSLNVDVAVLLHRCPQTFGLSIESNLKPVTEFFLEKGFGLDEIGIMISRYGALYTFSL 416

Query: 300 GKLEVGLEFFMNEAKVSKSDIVRNPFCLMHAMHGRVLPRYRVLE 342
            +  +    +       KS++V+ P    +++  R+ PRY +++
Sbjct: 417 KENVMPKWDYFQTMDYPKSELVKFPQFFGYSLQERIKPRYELVQ 448

[Close]

BLAST of CSPI04G04850 vs. ExPASy Swiss-Prot
Match: Q9SZL6 (Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=MTERF6 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.7e-08
Identity = 39/144 (27.08%), Postives = 68/144 (47.22%), Query Frame = 0


Query: 83  EKPRSVYKYLSDLGLSDTQIKSAVRITPQIAFSSIEKTLKPKIEFLQNLGF-VGSDLSKF 142
           EK   +  +   LG+ +TQ+   +   P++   SI+  L   + FL +LG      + K 
Sbjct: 112 EKLCPLLAFFQALGVPETQLGKMILFNPRLISYSIDTKLTVIVSFLASLGLDQDGMIGKV 171

Query: 143 ISRQSKFFSSSLEKTLMPNVEILKNVLPKGTCNDDLPKVLRRCSDVLTRSPYKVLSVNIN 202
           + +       S++K L P  E LK+ +  G   D +  V+     +L R   K+L  N +
Sbjct: 172 LVKNPFLMGYSVDKRLRPTTEFLKSSV--GLSEDGIKSVVMNFPQLLCRDVNKILKPNYD 231

Query: 203 YLRSCGIVDYQLSTLLKRQPALFI 226
           YL+ CG  D Q++T++   P + I
Sbjct: 232 YLKECGFGDSQIATMVTGYPQILI 253

[Close]

BLAST of CSPI04G04850 vs. ExPASy Swiss-Prot
Match: F4IHL3 (Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF2 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.2e-06
Identity = 41/155 (26.45%), Postives = 68/155 (43.87%), Query Frame = 0


Query: 78  GIQSTEKPRSVYKYLSDLGLSDTQIKSAVRITPQIAFSSIEKTLKPKIEFLQNLGFVGSD 137
           G    E+ + + KY   LG+    +K  + + P +    +EKT+ PK+ FLQ +G     
Sbjct: 381 GCSIEERWKPLVKYFYYLGIPKEGMKRILVVKPILYCIDLEKTIAPKVRFLQEMGIPNEA 440

Query: 138 LSKFISRQSKFFSSSLEKTLMPNVEILKNVLPKGTCNDDLPKVLRRCSDVLTRSPYKVLS 197
           +   + +     ++SL K + P V  L  +   G    D+ KV+     +L  S    L 
Sbjct: 441 IGNMLVKFPSLLTNSLYKKIRPVVIFL--LTRAGVTQKDIGKVIAMDPALLGCSIGTKLE 500

Query: 198 VNINYLRSCGIVDYQLSTLLKRQPALFIMHESRLK 233
            N+ Y  S GI  YQL  ++   P L   +   L+
Sbjct: 501 PNMRYYISLGIRFYQLGEMIADFPMLLRYNVDNLR 533

[Close]

BLAST of CSPI04G04850 vs. ExPASy Swiss-Prot
Match: Q9ZT96 (Transcription termination factor MTERF4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF4 PE=1 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.0e-06
Identity = 38/142 (26.76%), Postives = 71/142 (50.00%), Query Frame = 0


Query: 90  KYLSDLGLSDTQIKSAVRITPQIAFSSIEKTLKPKIEFLQNLGFVGSDLSKFISRQSKFF 149
           ++L  LGL+   I +     P +   S++K + P +++L  LG   S  ++F+ R  +  
Sbjct: 152 EFLHKLGLTIEDINN----YPLVLGCSVKKNMVPVLDYLGKLGVRKSTFTEFLRRYPQVL 211

Query: 150 SSSLEKTLMPNVEILKNVLPKGTCNDDLPKVLRRCSDVLTRSPYKVLSVNINYLRSCGIV 209
            SS+   L P V+ L+ +  K +   D+P+VL R  +VL       +S ++ YL   G+ 
Sbjct: 212 HSSVVIDLAPVVKYLQGLDIKPS---DVPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVA 271

Query: 210 DYQLSTLLKRQPALFIMHESRL 232
             ++  +L R P +  M  +R+
Sbjct: 272 RREIGGILTRYPEILGMRVARI 286

[Close]

BLAST of CSPI04G04850 vs. ExPASy Swiss-Prot
Match: Q9FM80 (Transcription termination factor MTERF9, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF9 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 1.5e-04
Identity = 31/120 (25.83%), Postives = 58/120 (48.33%), Query Frame = 0


Query: 86  RSVYKYL-SDLGLSDTQIKSAVRITPQIAFSSIEKTLKPKIEFL-QNLGFVGSDLSKFIS 145
           R   +YL  ++G+ +T +   V+++PQI    ++ T   +  FL + LG     + K + 
Sbjct: 292 RPTIRYLIEEVGIKETDVGKVVQLSPQILVQRLDITWNTRYMFLSKELGAPRDSVVKMVK 351

Query: 146 RQSKFFSSSLEKTLMPNVEILKNVLPKGTCNDDLPKVLRRCSDVLTRSPYKVLSVNINYL 204
           +  +    S++   +P +  L+++   G CN D+ KVL   + VL+ S    L     YL
Sbjct: 352 KHPQLLHYSIDDGFLPRINFLRSI---GMCNSDILKVLTSLTQVLSLSLEDNLKPKYMYL 408

[Close]

BLAST of CSPI04G04850 vs. ExPASy TrEMBL
Match: A0A0A0KUB9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G036600 PE=3 SV=1)

HSP 1 Score: 759.6 bits (1960), Expect = 6.4e-216
Identity = 391/406 (96.31%), Postives = 391/406 (96.31%), Query Frame = 0


Query: 1   MYAMYPSFSVCVPSPLNPPFFLRLIHPFLFSFF---------------SSSSSSSSSHSQ 60
           MYAMYPSFSVCVPSPLNPPFFLRLIHPFLFSFF               SSSSSSSSSHSQ
Sbjct: 1   MYAMYPSFSVCVPSPLNPPFFLRLIHPFLFSFFSSSSSSSSSSSSSSSSSSSSSSSSHSQ 60

Query: 61  PPSHSYGIVLQYLIDTFQLSPARAVSIMATRRGIQSTEKPRSVYKYLSDLGLSDTQIKSA 120
           PPSHSYGIVLQYLIDTFQLSPARAVSIMATRRGIQSTEKPRSVYKYLSDLGLSDTQIKSA
Sbjct: 61  PPSHSYGIVLQYLIDTFQLSPARAVSIMATRRGIQSTEKPRSVYKYLSDLGLSDTQIKSA 120

Query: 121 VRITPQIAFSSIEKTLKPKIEFLQNLGFVGSDLSKFISRQSKFFSSSLEKTLMPNVEILK 180
           VRITPQIAFSSIEKTLKPKIEFLQNLGFVGSDLSKFISRQSKFFSSSLEKTLMPNVEILK
Sbjct: 121 VRITPQIAFSSIEKTLKPKIEFLQNLGFVGSDLSKFISRQSKFFSSSLEKTLMPNVEILK 180

Query: 181 NVLPKGTCNDDLPKVLRRCSDVLTRSPYKVLSVNINYLRSCGIVDYQLSTLLKRQPALFI 240
           NVLPKGTCNDDLPKVLRRCSDVLTRSPYKVLSVNINYLRSCGIVDYQLSTLLKRQPALFI
Sbjct: 181 NVLPKGTCNDDLPKVLRRCSDVLTRSPYKVLSVNINYLRSCGIVDYQLSTLLKRQPALFI 240

Query: 241 MHESRLKDFVSMAVKAGFSPNGTMFIHGLHSISSISNATYKKKVKLICSFGITEKECMRM 300
           MHESRLKDFVSMAVKAGFSPNGTMFIHGLHSISSISNATYKKKVKLICSFGITEKECMRM
Sbjct: 241 MHESRLKDFVSMAVKAGFSPNGTMFIHGLHSISSISNATYKKKVKLICSFGITEKECMRM 300

Query: 301 FNSAPVLMRTSVGKLEVGLEFFMNEAKVSKSDIVRNPFCLMHAMHGRVLPRYRVLEVLKS 360
           FNSAPVLMRTSVGKLEVGLEFFMNEAKVSKSDIVRNPFCLMHAMHGRVLPRYRVLEVLKS
Sbjct: 301 FNSAPVLMRTSVGKLEVGLEFFMNEAKVSKSDIVRNPFCLMHAMHGRVLPRYRVLEVLKS 360

Query: 361 KRLTKKLPKLIDSLWMPDEDFLDKFVRRFPDNMNDLFEAFRGNSRR 392
           KRLTKKLPKLIDSLWMPDEDFLDKFVRRFPDNMNDLFEAFRGNSRR
Sbjct: 361 KRLTKKLPKLIDSLWMPDEDFLDKFVRRFPDNMNDLFEAFRGNSRR 406

[Close]

BLAST of CSPI04G04850 vs. ExPASy TrEMBL
Match: A0A5A7TPC3 (Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G00220 PE=3 SV=1)

HSP 1 Score: 609.0 bits (1569), Expect = 1.4e-170
Identity = 322/389 (82.78%), Postives = 342/389 (87.92%), Query Frame = 0


Query: 1   MYAMYPSFSVCVPSPLNPPFFLRLIHPFLFSFFSSSSSSSSSHSQPPSHSYGIVLQYLID 60
           MYAM P FS  V S LNPP FLR IHPF  SFFSSSSSSSSSH+QPPS S GIVLQYLID
Sbjct: 1   MYAMTPPFS--VSSRLNPPPFLR-IHPFFSSFFSSSSSSSSSHTQPPSDSNGIVLQYLID 60

Query: 61  TFQLSPARAVSIMATRRGIQSTEKPRSVYKYLSDLGLSDTQIKSAVRITPQIAFSSIEKT 120
           TFQLSPA AVSIMA RRG++STEKPRSVYKYLS+LGLSDTQIKSA+R TPQ+AF+SIEKT
Sbjct: 61  TFQLSPASAVSIMANRRGLKSTEKPRSVYKYLSELGLSDTQIKSAIRNTPQLAFTSIEKT 120

Query: 121 LKPKIEFLQNLGFVGSDLSKFISRQSKFFSSSLEKTLMPNVEILKNVLPKGTCNDDLPKV 180
           LKPKIEF QNLG VGS LSKFIS+ SK  S SLEKTLMPN+EILKNVL K  CN  LP V
Sbjct: 121 LKPKIEFFQNLGLVGSHLSKFISKNSKVLSCSLEKTLMPNIEILKNVLAKDKCNAGLPTV 180

Query: 181 LRRCSDVLTRSPYKVLSVNINYLRSCGIVDYQLSTLLKRQPALFIMHESRLKDFVSMAVK 240
           LRRCS +L RSP KVLSVNI+YLRSCG+VDYQL  LLKRQPAL I  ESRLKDFVSMA+K
Sbjct: 181 LRRCSGILMRSPDKVLSVNISYLRSCGVVDYQLPMLLKRQPALLITRESRLKDFVSMAIK 240

Query: 241 AGFSPNGTMFIHGLHSISSISNATYKKKVKLICSFGITEKECMRMFNSAPVLMRTSVGKL 300
           AGFS N  MFIHGL SISSISNAT+KKKV+LICSFGITEKECMRMFNSAPVLMRTS+ KL
Sbjct: 241 AGFSINSRMFIHGLLSISSISNATFKKKVELICSFGITEKECMRMFNSAPVLMRTSIDKL 300

Query: 301 EVGLEFFMNEAKVSKSDIVRNPFCLMHAMHGRVLPRYRVLEVLKSKRLTKKLPKLIDSLW 360
           EVGLEFFMNEAKVSKS+IVR P CLMHAMH RVLPRYRVLEVLKSKRLTKKLPKLI+SLW
Sbjct: 301 EVGLEFFMNEAKVSKSEIVRKPSCLMHAMHERVLPRYRVLEVLKSKRLTKKLPKLINSLW 360

Query: 361 MPDEDFLDKFVRRFPDNMNDLFEAFRGNS 390
             DEDFLD +VRRFPDNM+DLFEAFRGNS
Sbjct: 361 KSDEDFLDIYVRRFPDNMDDLFEAFRGNS 386

[Close]

BLAST of CSPI04G04850 vs. ExPASy TrEMBL
Match: A0A1S3BXT8 (transcription termination factor MTERF5, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103494394 PE=3 SV=1)

HSP 1 Score: 604.0 bits (1556), Expect = 4.5e-169
Identity = 322/396 (81.31%), Postives = 343/396 (86.62%), Query Frame = 0


Query: 1   MYAMYPSFSVCVPSPLNPPFFLRLIHPFLFSFF-------SSSSSSSSSHSQPPSHSYGI 60
           MYAM P FS  V S LNPP FLR IHPF FSFF       SSSSSSSSSH+QPPS S GI
Sbjct: 1   MYAMTPPFS--VSSRLNPPPFLR-IHPFFFSFFSSSSSSSSSSSSSSSSHTQPPSDSNGI 60

Query: 61  VLQYLIDTFQLSPARAVSIMATRRGIQSTEKPRSVYKYLSDLGLSDTQIKSAVRITPQIA 120
           VLQYLIDTFQLSPA AVSIMA RRG++STEKPRSVYKYLS+LGLSDTQIKSA+R TPQ+A
Sbjct: 61  VLQYLIDTFQLSPASAVSIMANRRGLKSTEKPRSVYKYLSELGLSDTQIKSAIRNTPQLA 120

Query: 121 FSSIEKTLKPKIEFLQNLGFVGSDLSKFISRQSKFFSSSLEKTLMPNVEILKNVLPKGTC 180
           F+SI+KTLKPKIEF QNLG VGS LSKFIS+ SK  S SLEKTLMPN+EILKNVL K  C
Sbjct: 121 FTSIDKTLKPKIEFFQNLGLVGSHLSKFISKNSKVLSCSLEKTLMPNIEILKNVLAKDKC 180

Query: 181 NDDLPKVLRRCSDVLTRSPYKVLSVNINYLRSCGIVDYQLSTLLKRQPALFIMHESRLKD 240
           N  LP VLRRCS +L RSP KVLSVNI+YLRSCG+VDYQL  LLKRQPAL I  ESRLKD
Sbjct: 181 NAGLPTVLRRCSGILMRSPDKVLSVNISYLRSCGVVDYQLPMLLKRQPALLITRESRLKD 240

Query: 241 FVSMAVKAGFSPNGTMFIHGLHSISSISNATYKKKVKLICSFGITEKECMRMFNSAPVLM 300
           FVSMA+KAGFS N  MFIHGL SISSISNAT+KKKV+LICSFGITEKECMRMFNSAPVLM
Sbjct: 241 FVSMAIKAGFSINSRMFIHGLLSISSISNATFKKKVELICSFGITEKECMRMFNSAPVLM 300

Query: 301 RTSVGKLEVGLEFFMNEAKVSKSDIVRNPFCLMHAMHGRVLPRYRVLEVLKSKRLTKKLP 360
           RTS+ KLEVGLEFFMNEAKVSKS+IVR P CLMHAMH RVLPRYRVLEVLKSKRLTKKLP
Sbjct: 301 RTSIDKLEVGLEFFMNEAKVSKSEIVRKPSCLMHAMHERVLPRYRVLEVLKSKRLTKKLP 360

Query: 361 KLIDSLWMPDEDFLDKFVRRFPDNMNDLFEAFRGNS 390
           KLI+SLW  DEDFLD +VRRFPDNM+DLFEAFRGNS
Sbjct: 361 KLINSLWKSDEDFLDIYVRRFPDNMDDLFEAFRGNS 393

[Close]

BLAST of CSPI04G04850 vs. ExPASy TrEMBL
Match: A0A5D3CYZ2 (Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G005620 PE=3 SV=1)

HSP 1 Score: 604.0 bits (1556), Expect = 4.5e-169
Identity = 322/396 (81.31%), Postives = 343/396 (86.62%), Query Frame = 0


Query: 1   MYAMYPSFSVCVPSPLNPPFFLRLIHPFLFSFF-------SSSSSSSSSHSQPPSHSYGI 60
           MYAM P FS  V S LNPP FLR IHPF FSFF       SSSSSSSSSH+QPPS S GI
Sbjct: 1   MYAMTPPFS--VSSRLNPPPFLR-IHPFFFSFFSSSSSSSSSSSSSSSSHTQPPSDSNGI 60

Query: 61  VLQYLIDTFQLSPARAVSIMATRRGIQSTEKPRSVYKYLSDLGLSDTQIKSAVRITPQIA 120
           VLQYLIDTFQLSPA AVSIMA RRG++STEKPRSVYKYLS+LGLSDTQIKSA+R TPQ+A
Sbjct: 61  VLQYLIDTFQLSPASAVSIMANRRGLKSTEKPRSVYKYLSELGLSDTQIKSAIRNTPQLA 120

Query: 121 FSSIEKTLKPKIEFLQNLGFVGSDLSKFISRQSKFFSSSLEKTLMPNVEILKNVLPKGTC 180
           F+SI+KTLKPKIEF QNLG VGS LSKFIS+ SK  S SLEKTLMPN+EILKNVL K  C
Sbjct: 121 FTSIDKTLKPKIEFFQNLGLVGSHLSKFISKNSKVLSCSLEKTLMPNIEILKNVLAKDKC 180

Query: 181 NDDLPKVLRRCSDVLTRSPYKVLSVNINYLRSCGIVDYQLSTLLKRQPALFIMHESRLKD 240
           N  LP VLRRCS +L RSP KVLSVNI+YLRSCG+VDYQL  LLKRQPAL I  ESRLKD
Sbjct: 181 NAGLPTVLRRCSGILMRSPDKVLSVNISYLRSCGVVDYQLPMLLKRQPALLITRESRLKD 240

Query: 241 FVSMAVKAGFSPNGTMFIHGLHSISSISNATYKKKVKLICSFGITEKECMRMFNSAPVLM 300
           FVSMA+KAGFS N  MFIHGL SISSISNAT+KKKV+LICSFGITEKECMRMFNSAPVLM
Sbjct: 241 FVSMAIKAGFSINSRMFIHGLLSISSISNATFKKKVELICSFGITEKECMRMFNSAPVLM 300

Query: 301 RTSVGKLEVGLEFFMNEAKVSKSDIVRNPFCLMHAMHGRVLPRYRVLEVLKSKRLTKKLP 360
           RTS+ KLEVGLEFFMNEAKVSKS+IVR P CLMHAMH RVLPRYRVLEVLKSKRLTKKLP
Sbjct: 301 RTSIDKLEVGLEFFMNEAKVSKSEIVRKPSCLMHAMHERVLPRYRVLEVLKSKRLTKKLP 360

Query: 361 KLIDSLWMPDEDFLDKFVRRFPDNMNDLFEAFRGNS 390
           KLI+SLW  DEDFLD +VRRFPDNM+DLFEAFRGNS
Sbjct: 361 KLINSLWKSDEDFLDIYVRRFPDNMDDLFEAFRGNS 393

[Close]

BLAST of CSPI04G04850 vs. ExPASy TrEMBL
Match: A0A6J1JB80 (uncharacterized protein LOC111482884 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482884 PE=3 SV=1)

HSP 1 Score: 511.9 bits (1317), Expect = 2.3e-141
Identity = 273/387 (70.54%), Postives = 316/387 (81.65%), Query Frame = 0


Query: 1   MYAMYPSFSVCVPSPLNPPFFLRLIHPFLFSFFSSSSSSSSSHSQPPSHSYGIVLQYLID 60
           MYA+  SFS  + S  NPP  LR I P L+ FF     SSSSHSQ  S SYGIV+QYLID
Sbjct: 1   MYALRSSFS--ISSRHNPPSLLR-IDPLLYCFF-----SSSSHSQ-ASASYGIVVQYLID 60

Query: 61  TFQLSPARAVSIMATRRGIQSTEKPRSVYKYLSDLGLSDTQIKSAVRITPQIAFSSIEKT 120
           TF+LSPARAVSIM++RRGI STEKP+SVYKYLS+LG S+  I+S +R+ PQIAFS+IEKT
Sbjct: 61  TFELSPARAVSIMSSRRGIASTEKPQSVYKYLSELGFSEAHIQSTIRLAPQIAFSNIEKT 120

Query: 121 LKPKIEFLQNLGFVGSDLSKFISRQSKFFSSSLEKTLMPNVEILKNVLPKGTCNDDLPKV 180
           LKPKIEF QNLG VGSDL +FIS+ S   + SLEK LMP+VEILK+V PK  CN DL +V
Sbjct: 121 LKPKIEFFQNLGLVGSDLGRFISKHSTLLTISLEKRLMPSVEILKSVFPKDECNSDLLQV 180

Query: 181 LRRCSDVLTRSPYKVLSVNINYLRSCGIVDYQLSTLLKRQPALFIMHESRLKDFVSMAVK 240
           LRRCSD+L RSPY  L VNINYL+SCGIV  QLS LLKRQPALF M ES+++D VSM V+
Sbjct: 181 LRRCSDMLMRSPYTRLPVNINYLQSCGIVGSQLSMLLKRQPALFGMRESQVRDLVSMVVE 240

Query: 241 AGFSPNGTMFIHGLHSISSISNATYKKKVKLICSFGITEKECMRMFNSAPVLMRTSVGKL 300
            GFS N  MF+HGLH+ISS+SNAT+KKKV+LICSFGITEKECMRMF SAPVL+RTSVGKL
Sbjct: 241 TGFSTNTRMFVHGLHAISSVSNATFKKKVELICSFGITEKECMRMFTSAPVLIRTSVGKL 300

Query: 301 EVGLEFFMNEAKVSKSDIVRNPFCLMHAMHGRVLPRYRVLEVLKSKRLTKKLPKLIDSLW 360
           + GLEFFMNEA+VS+SDIVR P CLMHAM GRVLPRYRVL+V+ SKRL+KK  +LID L 
Sbjct: 301 KRGLEFFMNEAEVSRSDIVRKPTCLMHAMQGRVLPRYRVLQVVNSKRLSKKHLQLIDILG 360

Query: 361 MPDEDFLDKFVRRFPDNMNDLFEAFRG 388
           M DE+FLDKFV RFPD++ +L  AFRG
Sbjct: 361 MSDENFLDKFVHRFPDHVTELLAAFRG 378

[Close]

BLAST of CSPI04G04850 vs. NCBI nr
Match: XP_004149163.2 (transcription termination factor MTERF5, chloroplastic [Cucumis sativus] >KAE8637573.1 hypothetical protein CSA_017850 [Cucumis sativus])

HSP 1 Score: 764.6 bits (1973), Expect = 4.1e-217
Identity = 391/393 (99.49%), Postives = 391/393 (99.49%), Query Frame = 0


Query: 1   MYAMYPSFSVCVPSPLNPPFFLRLIHPFLFSFF--SSSSSSSSSHSQPPSHSYGIVLQYL 60
           MYAMYPSFSVCVPSPLNPPFFLRLIHPFLFSFF  SSSSSSSSSHSQPPSHSYGIVLQYL
Sbjct: 1   MYAMYPSFSVCVPSPLNPPFFLRLIHPFLFSFFSSSSSSSSSSSHSQPPSHSYGIVLQYL 60

Query: 61  IDTFQLSPARAVSIMATRRGIQSTEKPRSVYKYLSDLGLSDTQIKSAVRITPQIAFSSIE 120
           IDTFQLSPARAVSIMATRRGIQSTEKPRSVYKYLSDLGLSDTQIKSAVRITPQIAFSSIE
Sbjct: 61  IDTFQLSPARAVSIMATRRGIQSTEKPRSVYKYLSDLGLSDTQIKSAVRITPQIAFSSIE 120

Query: 121 KTLKPKIEFLQNLGFVGSDLSKFISRQSKFFSSSLEKTLMPNVEILKNVLPKGTCNDDLP 180
           KTLKPKIEFLQNLGFVGSDLSKFISRQSKFFSSSLEKTLMPNVEILKNVLPKGTCNDDLP
Sbjct: 121 KTLKPKIEFLQNLGFVGSDLSKFISRQSKFFSSSLEKTLMPNVEILKNVLPKGTCNDDLP 180

Query: 181 KVLRRCSDVLTRSPYKVLSVNINYLRSCGIVDYQLSTLLKRQPALFIMHESRLKDFVSMA 240
           KVLRRCSDVLTRSPYKVLSVNINYLRSCGIVDYQLSTLLKRQPALFIMHESRLKDFVSMA
Sbjct: 181 KVLRRCSDVLTRSPYKVLSVNINYLRSCGIVDYQLSTLLKRQPALFIMHESRLKDFVSMA 240

Query: 241 VKAGFSPNGTMFIHGLHSISSISNATYKKKVKLICSFGITEKECMRMFNSAPVLMRTSVG 300
           VKAGFSPNGTMFIHGLHSISSISNATYKKKVKLICSFGITEKECMRMFNSAPVLMRTSVG
Sbjct: 241 VKAGFSPNGTMFIHGLHSISSISNATYKKKVKLICSFGITEKECMRMFNSAPVLMRTSVG 300

Query: 301 KLEVGLEFFMNEAKVSKSDIVRNPFCLMHAMHGRVLPRYRVLEVLKSKRLTKKLPKLIDS 360
           KLEVGLEFFMNEAKVSKSDIVRNPFCLMHAMHGRVLPRYRVLEVLKSKRLTKKLPKLIDS
Sbjct: 301 KLEVGLEFFMNEAKVSKSDIVRNPFCLMHAMHGRVLPRYRVLEVLKSKRLTKKLPKLIDS 360

Query: 361 LWMPDEDFLDKFVRRFPDNMNDLFEAFRGNSRR 392
           LWMPDEDFLDKFVRRFPDNMNDLFEAFRGNSRR
Sbjct: 361 LWMPDEDFLDKFVRRFPDNMNDLFEAFRGNSRR 393

[Close]

BLAST of CSPI04G04850 vs. NCBI nr
Match: KAA0044738.1 (transcription termination factor MTERF5 [Cucumis melo var. makuwa])

HSP 1 Score: 609.0 bits (1569), Expect = 2.9e-170
Identity = 322/389 (82.78%), Postives = 342/389 (87.92%), Query Frame = 0


Query: 1   MYAMYPSFSVCVPSPLNPPFFLRLIHPFLFSFFSSSSSSSSSHSQPPSHSYGIVLQYLID 60
           MYAM P FS  V S LNPP FLR IHPF  SFFSSSSSSSSSH+QPPS S GIVLQYLID
Sbjct: 1   MYAMTPPFS--VSSRLNPPPFLR-IHPFFSSFFSSSSSSSSSHTQPPSDSNGIVLQYLID 60

Query: 61  TFQLSPARAVSIMATRRGIQSTEKPRSVYKYLSDLGLSDTQIKSAVRITPQIAFSSIEKT 120
           TFQLSPA AVSIMA RRG++STEKPRSVYKYLS+LGLSDTQIKSA+R TPQ+AF+SIEKT
Sbjct: 61  TFQLSPASAVSIMANRRGLKSTEKPRSVYKYLSELGLSDTQIKSAIRNTPQLAFTSIEKT 120

Query: 121 LKPKIEFLQNLGFVGSDLSKFISRQSKFFSSSLEKTLMPNVEILKNVLPKGTCNDDLPKV 180
           LKPKIEF QNLG VGS LSKFIS+ SK  S SLEKTLMPN+EILKNVL K  CN  LP V
Sbjct: 121 LKPKIEFFQNLGLVGSHLSKFISKNSKVLSCSLEKTLMPNIEILKNVLAKDKCNAGLPTV 180

Query: 181 LRRCSDVLTRSPYKVLSVNINYLRSCGIVDYQLSTLLKRQPALFIMHESRLKDFVSMAVK 240
           LRRCS +L RSP KVLSVNI+YLRSCG+VDYQL  LLKRQPAL I  ESRLKDFVSMA+K
Sbjct: 181 LRRCSGILMRSPDKVLSVNISYLRSCGVVDYQLPMLLKRQPALLITRESRLKDFVSMAIK 240

Query: 241 AGFSPNGTMFIHGLHSISSISNATYKKKVKLICSFGITEKECMRMFNSAPVLMRTSVGKL 300
           AGFS N  MFIHGL SISSISNAT+KKKV+LICSFGITEKECMRMFNSAPVLMRTS+ KL
Sbjct: 241 AGFSINSRMFIHGLLSISSISNATFKKKVELICSFGITEKECMRMFNSAPVLMRTSIDKL 300

Query: 301 EVGLEFFMNEAKVSKSDIVRNPFCLMHAMHGRVLPRYRVLEVLKSKRLTKKLPKLIDSLW 360
           EVGLEFFMNEAKVSKS+IVR P CLMHAMH RVLPRYRVLEVLKSKRLTKKLPKLI+SLW
Sbjct: 301 EVGLEFFMNEAKVSKSEIVRKPSCLMHAMHERVLPRYRVLEVLKSKRLTKKLPKLINSLW 360

Query: 361 MPDEDFLDKFVRRFPDNMNDLFEAFRGNS 390
             DEDFLD +VRRFPDNM+DLFEAFRGNS
Sbjct: 361 KSDEDFLDIYVRRFPDNMDDLFEAFRGNS 386

[Close]

BLAST of CSPI04G04850 vs. NCBI nr
Match: XP_008453751.1 (PREDICTED: transcription termination factor MTERF5, chloroplastic [Cucumis melo] >XP_008453752.1 PREDICTED: transcription termination factor MTERF5, chloroplastic [Cucumis melo] >XP_008453753.1 PREDICTED: transcription termination factor MTERF5, chloroplastic [Cucumis melo] >XP_008453754.1 PREDICTED: transcription termination factor MTERF5, chloroplastic [Cucumis melo] >XP_008453755.1 PREDICTED: transcription termination factor MTERF5, chloroplastic [Cucumis melo] >XP_008453756.1 PREDICTED: transcription termination factor MTERF5, chloroplastic [Cucumis melo] >XP_008453758.1 PREDICTED: transcription termination factor MTERF5, chloroplastic [Cucumis melo] >TYK16725.1 transcription termination factor MTERF5 [Cucumis melo var. makuwa])

HSP 1 Score: 604.0 bits (1556), Expect = 9.3e-169
Identity = 322/396 (81.31%), Postives = 343/396 (86.62%), Query Frame = 0


Query: 1   MYAMYPSFSVCVPSPLNPPFFLRLIHPFLFSFF-------SSSSSSSSSHSQPPSHSYGI 60
           MYAM P FS  V S LNPP FLR IHPF FSFF       SSSSSSSSSH+QPPS S GI
Sbjct: 1   MYAMTPPFS--VSSRLNPPPFLR-IHPFFFSFFSSSSSSSSSSSSSSSSHTQPPSDSNGI 60

Query: 61  VLQYLIDTFQLSPARAVSIMATRRGIQSTEKPRSVYKYLSDLGLSDTQIKSAVRITPQIA 120
           VLQYLIDTFQLSPA AVSIMA RRG++STEKPRSVYKYLS+LGLSDTQIKSA+R TPQ+A
Sbjct: 61  VLQYLIDTFQLSPASAVSIMANRRGLKSTEKPRSVYKYLSELGLSDTQIKSAIRNTPQLA 120

Query: 121 FSSIEKTLKPKIEFLQNLGFVGSDLSKFISRQSKFFSSSLEKTLMPNVEILKNVLPKGTC 180
           F+SI+KTLKPKIEF QNLG VGS LSKFIS+ SK  S SLEKTLMPN+EILKNVL K  C
Sbjct: 121 FTSIDKTLKPKIEFFQNLGLVGSHLSKFISKNSKVLSCSLEKTLMPNIEILKNVLAKDKC 180

Query: 181 NDDLPKVLRRCSDVLTRSPYKVLSVNINYLRSCGIVDYQLSTLLKRQPALFIMHESRLKD 240
           N  LP VLRRCS +L RSP KVLSVNI+YLRSCG+VDYQL  LLKRQPAL I  ESRLKD
Sbjct: 181 NAGLPTVLRRCSGILMRSPDKVLSVNISYLRSCGVVDYQLPMLLKRQPALLITRESRLKD 240

Query: 241 FVSMAVKAGFSPNGTMFIHGLHSISSISNATYKKKVKLICSFGITEKECMRMFNSAPVLM 300
           FVSMA+KAGFS N  MFIHGL SISSISNAT+KKKV+LICSFGITEKECMRMFNSAPVLM
Sbjct: 241 FVSMAIKAGFSINSRMFIHGLLSISSISNATFKKKVELICSFGITEKECMRMFNSAPVLM 300

Query: 301 RTSVGKLEVGLEFFMNEAKVSKSDIVRNPFCLMHAMHGRVLPRYRVLEVLKSKRLTKKLP 360
           RTS+ KLEVGLEFFMNEAKVSKS+IVR P CLMHAMH RVLPRYRVLEVLKSKRLTKKLP
Sbjct: 301 RTSIDKLEVGLEFFMNEAKVSKSEIVRKPSCLMHAMHERVLPRYRVLEVLKSKRLTKKLP 360

Query: 361 KLIDSLWMPDEDFLDKFVRRFPDNMNDLFEAFRGNS 390
           KLI+SLW  DEDFLD +VRRFPDNM+DLFEAFRGNS
Sbjct: 361 KLINSLWKSDEDFLDIYVRRFPDNMDDLFEAFRGNS 393

[Close]

BLAST of CSPI04G04850 vs. NCBI nr
Match: XP_031739970.1 (transcription termination factor MTERF5, chloroplastic-like [Cucumis sativus] >KAE8649160.1 hypothetical protein Csa_014489 [Cucumis sativus])

HSP 1 Score: 580.9 bits (1496), Expect = 8.4e-162
Identity = 298/319 (93.42%), Postives = 300/319 (94.04%), Query Frame = 0


Query: 73  MATRRGIQSTEKPRSVYKYLSDLGLSDTQIKSAVRITPQIAFSSIEKTLKPKIEFLQNLG 132
           MATRRGIQSTEKPRSVYKYLSDLGLSDTQIKSAVRITPQIAFSSIEKTLKPKIEFLQNLG
Sbjct: 1   MATRRGIQSTEKPRSVYKYLSDLGLSDTQIKSAVRITPQIAFSSIEKTLKPKIEFLQNLG 60

Query: 133 FVGSDLSKFISRQSKFFSSSLEKTLMPNVEILKNVLPKGTCNDDLPKVLRRCSDVLTRSP 192
           FVGSDL+                 +  NVEILKNVLPKGTCNDDLPKVLRRCSDVLTRSP
Sbjct: 61  FVGSDLN-----------------IDANVEILKNVLPKGTCNDDLPKVLRRCSDVLTRSP 120

Query: 193 YKVLSVNINYLRSCGIVDYQLSTLLKRQPALFIMHESRLKDFVSMAVKAGFSPNGTMFIH 252
           YKVLSVNINYLRSCGIVDYQLSTLLKRQPALFIMHESRLKDFVSMAVKAGFSPNGTMFIH
Sbjct: 121 YKVLSVNINYLRSCGIVDYQLSTLLKRQPALFIMHESRLKDFVSMAVKAGFSPNGTMFIH 180

Query: 253 GLHSISSISNATYKKKVKLICSFGITEKECMRMFNSAPVLMRTSVGKLEVGLEFFMNEAK 312
           GLHSISSISNATYKKKVKLICSFGITEKECMRMFNSAPVLMRTSVGKLEVGLEFFMNEAK
Sbjct: 181 GLHSISSISNATYKKKVKLICSFGITEKECMRMFNSAPVLMRTSVGKLEVGLEFFMNEAK 240

Query: 313 VSKSDIVRNPFCLMHAMHGRVLPRYRVLEVLKSKRLTKKLPKLIDSLWMPDEDFLDKFVR 372
           VSKSDIVRNPFCLMHAMHGRVLPRYRVLEVLKSKRLTKKLPKLIDSLWMPDEDFLDKFVR
Sbjct: 241 VSKSDIVRNPFCLMHAMHGRVLPRYRVLEVLKSKRLTKKLPKLIDSLWMPDEDFLDKFVR 300

Query: 373 RFPDNMNDLFEAFRGNSRR 392
           RFPDNMNDLFEAFRGNSRR
Sbjct: 301 RFPDNMNDLFEAFRGNSRR 302

[Close]

BLAST of CSPI04G04850 vs. NCBI nr
Match: XP_038888519.1 (transcription termination factor MTERF5, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 531.6 bits (1368), Expect = 5.9e-147
Identity = 284/389 (73.01%), Postives = 320/389 (82.26%), Query Frame = 0


Query: 1   MYAMYPSFSVCVPSPLNPPFFLRLIHPFLFSFFSSSSSSSSSHSQPPSHSYGIVLQYLID 60
           MYA+ PSFS  V S LNPP FLR IHPFL+ FFSSSSSSS + S   S S  IV+QYLID
Sbjct: 1   MYALRPSFS--VSSRLNPPSFLR-IHPFLYYFFSSSSSSSHTQS---SASNAIVVQYLID 60

Query: 61  TFQLSPARAVSIMATRRGIQSTEKPRSVYKYLSDLGLSDTQIKSAVRITPQIAFSSIEKT 120
           TFQLSPARA SIM+ RRG+QSTEKP+SVYKYLSDLG SD  I+SA+R+ PQIAFS+IEKT
Sbjct: 61  TFQLSPARAASIMSCRRGLQSTEKPQSVYKYLSDLGFSDAHIRSAIRLAPQIAFSNIEKT 120

Query: 121 LKPKIEFLQNLGFVGSDLSKFISRQSKFFSSSLEKTLMPNVEILKNVLPKGTCNDDLPKV 180
           LKPKIEF QNLG VGSDLSKFISR S   + SLEK LMP+VEILKN+LPK  CNDDL  V
Sbjct: 121 LKPKIEFFQNLGLVGSDLSKFISRHSTLLTVSLEKKLMPSVEILKNILPKDNCNDDLLLV 180

Query: 181 LRRCSDVLTRSPYKVLSVNINYLRSCGIVDYQLSTLLKRQPALFIMHESRLKDFVSMAVK 240
           +RR SD L R+P K LS+NINYL+SCGIVD QL  LLKRQ +LF   ESRLKD VS+ V+
Sbjct: 181 IRRWSDRLMRTPCKRLSININYLQSCGIVDSQLLMLLKRQSSLFGRSESRLKDIVSVVVE 240

Query: 241 AGFSPNGTMFIHGLHSISSISNATYKKKVKLICSFGITEKECMRMFNSAPVLMRTSVGKL 300
            GFS N  MF+HGLH+ISS+S  T KKKV+LICSFGITEKECMRMF SAPVL+RTS+GKL
Sbjct: 241 IGFSTNTRMFVHGLHAISSVSKVTLKKKVELICSFGITEKECMRMFTSAPVLIRTSIGKL 300

Query: 301 EVGLEFFMNEAKVSKSDIVRNPFCLMHAMHGRVLPRYRVLEVLKSKRLTKKLPKLIDSLW 360
           ++GLEFFMNEAKVSKSDIV +P CLMHAM GRVLPRYRVL+++KSKRL KK PK I +L 
Sbjct: 301 KLGLEFFMNEAKVSKSDIVGSPACLMHAMQGRVLPRYRVLQIVKSKRLMKKHPKFILTLG 360

Query: 361 MPDEDFLDKFVRRFPDNMNDLFEAFRGNS 390
           M DEDFLD+FV RFPDNM DL  A+RGNS
Sbjct: 361 MSDEDFLDRFVCRFPDNMKDLLVAYRGNS 383

[Close]

BLAST of CSPI04G04850 vs. TAIR 10
Match: AT5G64950.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 231.1 bits (588), Expect = 1.5e-60
Identity = 133/353 (37.68%), Postives = 215/353 (60.91%), Query Frame = 0


Query: 41  SSHSQPPSHSYGIVLQYLIDTFQLSPARAVSIMATRRGIQSTEKPRSVYKYLSDLGLSDT 100
           SS++ P S S    +++L D     P  A++I      ++S E+PRSV + L     SDT
Sbjct: 28  SSNATPASISNPAFVEFLRDNGFQKPL-AIAIAMRYPNLKSLEQPRSVIQMLKSYSFSDT 87

Query: 101 QIKSAVRITPQIAFSSIEKTLKPKIEFLQNLGFVGSDLSKFISRQSKFFSSSLEKTLMPN 160
           QI+ ++R+ P++ F ++EK L+PK+ F +++GF GS L KF+S+ S     SL K L+P 
Sbjct: 88  QIQKSIRVHPRMMFYNVEKILEPKLRFFKDIGFTGSGLGKFVSQNSSVVGVSLVKKLIPT 147

Query: 161 VEILKNVL-PKGTCNDDLPKVLRRCS-DVLTRSPYKVLSVNINYLRSCGIVDYQLSTLLK 220
           VEILK+++ PK   ++DLP +L RC   +L+R P   L  NI+YL +CGIV  QL++LL+
Sbjct: 148 VEILKSIVAPK---HEDLPVILSRCGWLLLSRDPNLFLLPNISYLETCGIVGSQLASLLR 207

Query: 221 RQPALFIMHESRLKDFVSMAVKAGFSPNGTMFIHGLHSISSISNATYKKKVKLICSFGIT 280
           RQP +F + E +L+ +VS A+  GF+ N  M +H + S+SS+S  T+ +KVKL  + G +
Sbjct: 208 RQPRIFNLSEEKLRGYVSRALDLGFTLNSRMLVHAVISLSSLSEKTFDRKVKLFMANGFS 267

Query: 281 EKECMRMFNSAPVLMRTSVGKLEVGLEFFMNEAKVSKSDIVRNPFCLMHAMHGRVLPRYR 340
           E E   +   +P L+R S  KL +G EF++    + +  + + P  L + +  RV+PR +
Sbjct: 268 EDEITDIIRRSPGLIRCSEDKLTLGFEFYLKRMGLEREALAKRPCVLSYNLEKRVIPRLK 327

Query: 341 VLEVLKSKRL----TKKLPKLIDSLWMPDEDFLDKFVRRFPDNM-NDLFEAFR 387
           VL++L+ K L     KK   ++  + M +E FL+K+V RF D +  +L  A++
Sbjct: 328 VLQILREKGLLLKEEKKKKNMVGIVEMTEEAFLEKYVVRFGDEIAEELLVAYK 376

[Close]

BLAST of CSPI04G04850 vs. TAIR 10
Match: AT1G21150.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 142.5 bits (358), Expect = 7.2e-34
Identity = 100/356 (28.09%), Postives = 168/356 (47.19%), Query Frame = 0


Query: 34  SSSSSSSSSHSQPPSHSYGIVLQYLIDTFQLSPARAVSIMATRRGIQSTEKPRSVYKYLS 93
           S   S +    +P   S+   + YL+D+  LS   A S     + + S++KP SV     
Sbjct: 40  SQVKSENLEKQKPCLESF--TVSYLVDSCGLSLESAKSNSRFVK-LVSSKKPDSVLALFK 99

Query: 94  DLGLSDTQIKSAVRITPQIAFSSIEKTLKPKIEFLQNLGFVGSDLSKFISRQSKFFSSSL 153
           D G ++ QI S ++  P++   S E  + PK+ F  ++GF  SD +K IS   K  S SL
Sbjct: 100 DHGFTNDQITSVIKSFPRVLSLSPEDVISPKLMFFSSIGFSTSDTAKMISSSPKMLSYSL 159

Query: 154 EKTLMPNVEILKNVLPKGTCNDDLPKVLRRCSDVLTRSPYKVLSVNINYLRSCGIVDYQL 213
            K L+P  + LK++L +    + + K L+R     +      +S+ ++  R  G+ D  +
Sbjct: 160 HKRLIPCYDSLKSILVE---EESVVKCLKRGIRCFSLKITHCVSLRVSICRELGVPDKSI 219

Query: 214 STLLKRQPALFIMHESRLKDFVSMAVKAGFSPNGTMFIHGLHSISSISNATYKKKVKLIC 273
             L++  P  F   E R  + ++     GF P    F+H + +    S +  ++K KL  
Sbjct: 220 KWLVQASPFTFFSRERRFNEVLNRVCSYGFDPKKAGFVHAMVAFDCTSESAMERKFKLFQ 279

Query: 274 SFGITEKECMRMFNSAPVLMRTSVGKLEVGLEFFMNEAKVSKSDIVRNPFCLMHAMHGRV 333
            FG ++++ +      P  +  S  K+   LE+ +N   +   DIV  P  L  +M  R+
Sbjct: 280 CFGWSKEDFVAAIMRFPNCVTVSDEKIMYTLEYLVNNIGLQARDIVARPVVLSLSMEKRI 339

Query: 334 LPRYRVLEVLKSKRLTKKLP-KLIDSLWMPDEDFLDKFVRRFPDNMNDLFEAFRGN 389
            PR +V+ +L SK L KK        L +   +F+DKFV ++ D M  L + F  N
Sbjct: 340 KPRNQVISLLLSKGLVKKEDINYFTILKLKSSEFMDKFVLKYQDEMPQLVQPFTSN 389

[Close]

BLAST of CSPI04G04850 vs. TAIR 10
Match: AT5G07900.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 135.6 bits (340), Expect = 8.7e-32
Identity = 100/382 (26.18%), Postives = 178/382 (46.60%), Query Frame = 0


Query: 7   SFSVCVPSPLNPPFFLRLIHPFLFSFFSSSSSSSSSHSQPPSHSYGIVLQYLIDTFQLSP 66
           SF+  +P     P F+  +    FS   ++ +S +             L YLID+  LSP
Sbjct: 25  SFTTILPKHHRKPIFVFSLQT-QFSSPVTTLTSKNPKDDEQQQKLSFTLNYLIDSCGLSP 84

Query: 67  ARAVSIMATRRGIQSTEKPRSVYKYLSDLGLSDTQIKSAVRITPQIAFSSIEKTLKPKIE 126
             A ++ + +  + S E+P +V   L D G +  QI S V+  P +  ++ E  L PK+ 
Sbjct: 85  DSA-TVASRKLLLDSPERPNTVLNLLRDHGFTTAQISSLVKKRPVLLLANAESVLLPKLS 144

Query: 127 FLQNLGFVGSDLSKFISRQSKFFSSSLEKTLMPNVEILKNVLPKGTCNDDLPKVLRRCSD 186
           F  ++G   S L++ ++      + SL   L+P+   LK+VL     ++ +   LRR + 
Sbjct: 145 FFLSIGVSKSLLARTLASDPTILTRSLVNQLIPSYNFLKSVLDS---DEKIVAALRRTTW 204

Query: 187 VLTRSPYKVLSVNINYLRSCGIVDYQLSTLLKRQPALFIMHESRLKDFVSMAVKAGFSPN 246
           V      K L  NINY+   G+ +  +  LL   P   +      +     A + GF+P 
Sbjct: 205 VFLEDHTKNLVPNINYMAETGVPEKCIKLLLTHFPEAVMQKNHEFQAIAKQAQEMGFNPQ 264

Query: 247 GTMFIHGLHSISSISN-ATYKKKVKLICSFGITEKECMRMFNSAPVLMRTSVGKLEVGLE 306
            + F+  +H++S   N + + K  ++   +G +E + M  F   P  M  S  K+   +E
Sbjct: 265 KSTFVLAIHALSGKGNKSIWDKCFEVYQRWGWSEDDIMCAFKKHPHCMMLSERKINRTME 324

Query: 307 FFMNEAKVSKSDIVRNPFCLMHAMHGRVLPRYRVLEVLKSKRLTKKLPKLIDSLWMPDED 366
           +F+NE  ++   I + P  L  ++  R++PR  V +VL S  L K+   L   L   ++ 
Sbjct: 325 YFVNEMNMAPRSIAQCPVVLFFSLEKRIIPRCSVTKVLVSNGLVKEDWSLTSLLVPVEKV 384

Query: 367 FLDKFVRRFPDNMNDLFEAFRG 388
           FL+K V ++ + + +L   + G
Sbjct: 385 FLEKLVIKYEEELPELMNLYLG 401

[Close]

BLAST of CSPI04G04850 vs. TAIR 10
Match: AT1G62120.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 98.6 bits (244), Expect = 1.2e-20
Identity = 95/394 (24.11%), Postives = 168/394 (42.64%), Query Frame = 0


Query: 33  FSSSSSSSSSHSQPPSHSYGIVLQYLIDTFQLSPARAVSIMATRRGIQSTEKPRSVYKYL 92
           FSSS+ ++   S+     +   + YL+D+  L+   A SI + +    +   P SV   L
Sbjct: 37  FSSSAIAADVSSRDGRKGHNFTVSYLVDSLGLATKVAESI-SMKVSFDNKGNPDSVLSLL 96

Query: 93  SDLGLSDTQIKSAVRITPQIAFSSIEKTLKPKIEFLQNLGFVGSDLSKFISRQSKFFSSS 152
              G +D+QI + +R  P++     EK+L PK++FLQ++G   S+L++ +S   K     
Sbjct: 97  RSHGFTDSQISNIIRTFPRLLILDAEKSLAPKLQFLQSIGASSSELTETVSAVPKILGKR 156

Query: 153 LEKTLMPNVEILKNVLPKGTCNDDLPKVLRRCSDVLTRSPYKVLSVNINYLRSCGIVDYQ 212
             K+L    + +K ++      D   K+ + C  +   S  +    N+  LR  G+    
Sbjct: 157 KGKSLSRYYDFVKVIIEA----DKSSKLEKLCHSLPEGSKQENKIRNLLVLREMGVPQRL 216

Query: 213 LSTLLKRQPALFIMHESRLKDFVSMAVKAGFSPNGTMFIHGLHSISSISNATYKKKVKLI 272
           L +LL    A  +  + + K+ +  AV+ GF P    F+  L+ +  +S+   + K    
Sbjct: 217 LFSLL-ISDAGDVCGKEKFKESLKKAVEIGFDPTTATFVKALNVLYGLSDKGIENKFNAC 276

Query: 273 CSFGITEKECMRMFNSAPVLMRTSVGKLE------VGL---------------------- 332
              G+   +   MF   P ++  S  K+E      +GL                      
Sbjct: 277 KRLGLAVDDVWAMFKKWPNILTKSEKKIENSVETFLGLGFSRDEFLMMVKRFPQCIGYST 336

Query: 333 -------EFFMNEAKVSKSDIVRNPFCLMHAMHGRVLPRYRVLEVLKSKRLTK-KLPKLI 389
                  EF + E       +   P  L +++  R +PR  V++VL SK L + +LP + 
Sbjct: 337 ELMKTKTEFLVTEMNWPLKAVASIPQVLGYSLEKRTVPRCNVIKVLISKGLLESELPPIS 396

[Close]

BLAST of CSPI04G04850 vs. TAIR 10
Match: AT1G61970.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 96.3 bits (238), Expect = 5.9e-20
Identity = 95/399 (23.81%), Postives = 176/399 (44.11%), Query Frame = 0


Query: 31  SFFSSSSSSSSSHSQPPSHSYGIVLQYLIDTFQLSPARAVSIMATRRGIQSTEKPRSVYK 90
           +FFSS+S++  S  +         + YL+D+  L+   A SI + +   +    P SV  
Sbjct: 32  NFFSSASAACLS-PRVGRKGNNFTVSYLVDSLGLTTKLAESI-SRKVSFEDKNNPDSVLN 91

Query: 91  YLSDLGLSDTQIKSAVRITPQIAFSSIEKTLKPKIEFLQNLGFVGSDLSKFISRQSKFFS 150
            L+  G + +QI + +R  PQ+  +  EK+L PK++FLQ+ G   S++++ +S   +   
Sbjct: 92  LLTSHGFTGSQISTIIRDYPQLLIADAEKSLGPKLQFLQSRGASSSEITEIVSSVPEILG 151

Query: 151 SSLEKTLMPNVEILKN-VLPKGTCNDDLPKVLRRCSDVLTRSPYKVLSVNINYLRSCGIV 210
               KT+    + +K+ +L K + N+ L      C   L +   +    N++ LR  G+ 
Sbjct: 152 KKGHKTISVYYDFIKDTLLEKSSKNEKL------CHS-LPQGNLENKIRNVSVLRELGMP 211

Query: 211 DYQLSTLL--KRQPALFIMHESRLKDFVSMAVKAGFSPNGTMFIHGLHSISSISNATYKK 270
              L +LL    QP   +  + + ++ +   V+ GF P  + F+  L  I  ++  T ++
Sbjct: 212 HKLLFSLLISDSQP---VCGKEKFEETLKKVVEMGFDPTTSKFVEALQVIYKMNEKTIEE 271

Query: 271 KVKLICSFGITEKECMRMFNSAPVLMRTSVGKLEVGLEFFM------------------- 330
           KV L  S G    +    F   P+ +R S  K+   +E F+                   
Sbjct: 272 KVHLYKSLGFDVGDVWSSFKKWPISLRVSEKKMLDSIETFLGLGFSRDEFAKMVKHFPPC 331

Query: 331 -----------NEAKVSKSD-----IVRNPFCLMHAMHGRVLPRYRVLEVLKSKRLTK-K 389
                       E  V K +     +V NP    +++  R++PR  V++ L SK L + +
Sbjct: 332 IGLSTETVKKKTEFLVKKMNWPLKAVVSNPAVFGYSLEKRIVPRGNVIKALMSKGLMRNE 391

The following BLAST results are available for this feature:

BLAST of CSPI04G04850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JVI3	5.4e-10	22.89	Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana O...	[more]
Q9SZL6	1.7e-08	27.08	Transcription termination factor MTERF6, chloroplastic/mitochondrial OS=Arabidop...	[more]
F4IHL3	1.2e-06	26.45	Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana O...	[more]
Q9ZT96	8.0e-06	26.76	Transcription termination factor MTERF4, chloroplastic OS=Arabidopsis thaliana O...	[more]
Q9FM80	1.5e-04	25.83	Transcription termination factor MTERF9, chloroplastic OS=Arabidopsis thaliana O...	[more]

BLAST of CSPI04G04850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUB9	6.4e-216	96.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G036600 PE=3 SV=1	[more]
A0A5A7TPC3	1.4e-170	82.78	Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3BXT8	4.5e-169	81.31	transcription termination factor MTERF5, chloroplastic OS=Cucumis melo OX=3656 G...	[more]
A0A5D3CYZ2	4.5e-169	81.31	Transcription termination factor MTERF5 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A6J1JB80	2.3e-141	70.54	uncharacterized protein LOC111482884 isoform X1 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of CSPI04G04850 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149163.2	4.1e-217	99.49	transcription termination factor MTERF5, chloroplastic [Cucumis sativus] >KAE863...	[more]
KAA0044738.1	2.9e-170	82.78	transcription termination factor MTERF5 [Cucumis melo var. makuwa]	[more]
XP_008453751.1	9.3e-169	81.31	PREDICTED: transcription termination factor MTERF5, chloroplastic [Cucumis melo]...	[more]
XP_031739970.1	8.4e-162	93.42	transcription termination factor MTERF5, chloroplastic-like [Cucumis sativus] >K...	[more]
XP_038888519.1	5.9e-147	73.01	transcription termination factor MTERF5, chloroplastic-like [Benincasa hispida]	[more]

BLAST of CSPI04G04850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G64950.1	1.5e-60	37.68	Mitochondrial transcription termination factor family protein	[more]
AT1G21150.1	7.2e-34	28.09	Mitochondrial transcription termination factor family protein	[more]
AT5G07900.1	8.7e-32	26.18	Mitochondrial transcription termination factor family protein	[more]
AT1G62120.1	1.2e-20	24.11	Mitochondrial transcription termination factor family protein	[more]
AT1G61970.1	5.9e-20	23.81	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 214..244 e-value: 130.0 score: 10.7 coord: 103..134 e-value: 0.01 score: 25.0 coord: 283..314 e-value: 170.0 score: 9.8 coord: 178..209 e-value: 0.62 score: 19.1 coord: 315..346 e-value: 240.0 score: 8.7 coord: 139..171 e-value: 51.0 score: 12.8 coord: 248..278 e-value: 1800.0 score: 1.8
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 259..367 e-value: 5.3E-13 score: 48.6 coord: 171..246 e-value: 2.7E-5 score: 23.2 coord: 90..166 e-value: 9.0E-11 score: 41.2
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 32..384
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 169..385 e-value: 4.0E-36 score: 126.5
None	No IPR available	PANTHER	PTHR13068:SF173	EMB\|CAB62602.1	coord: 32..384

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G04850.1	CSPI04G04850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006353	DNA-templated transcription, termination
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003690	double-stranded DNA binding