Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGTTTCCTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGACGCTGAAGAATGGGAAAGAAACGAGATCGACGTTGTTCCACCACATTTATTAGCCGATGAAGAAGATGACGAGGATGGTGATGAACATGTAACGACGAGTACTATTAGTAACTATTGCTTTCCCGTTGATGGGTCATTCGAGGGATGGCGTGGGAGAGATTGCAAAGCTGATGGTGGCCATGGCCATGGCATTTTGGGGATTTTTTGTAGTCTAAGCAAAGTCATAGAGAAAAGGGCTTCTAATGGGATGAGTTCAGTGAGAATAATAGTCAGAACTATTTTAGGGTTTTTGATGGTGATGACCATGAAGATAATTAGTGCACAAAGATCCAAGATGTAA
mRNA sequence
ATGTCGGTTTCCTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGACGCTGAAGAATGGGAAAGAAACGAGATCGACGTTGTTCCACCACATTTATTAGCCGATGAAGAAGATGACGAGGATGGTGATGAACATGTAACGACGAGTACTATTAGTAACTATTGCTTTCCCGTTGATGGGTCATTCGAGGGATGGCGTGGGAGAGATTGCAAAGCTGATGGTGGCCATGGCCATGGCATTTTGGGGATTTTTTGTAGTCTAAGCAAAGTCATAGAGAAAAGGGCTTCTAATGGGATGAGTTCAGTGAGAATAATAGTCAGAACTATTTTAGGGTTTTTGATGGTGATGACCATGAAGATAATTAGTGCACAAAGATCCAAGATGTAA
Coding sequence (CDS)
ATGTCGGTTTCCTTGGAAGCTTTGGCAATGGCTGGGATTGATTCCAATGAGTGGGCTATGGACGCTGAAGAATGGGAAAGAAACGAGATCGACGTTGTTCCACCACATTTATTAGCCGATGAAGAAGATGACGAGGATGGTGATGAACATGTAACGACGAGTACTATTAGTAACTATTGCTTTCCCGTTGATGGGTCATTCGAGGGATGGCGTGGGAGAGATTGCAAAGCTGATGGTGGCCATGGCCATGGCATTTTGGGGATTTTTTGTAGTCTAAGCAAAGTCATAGAGAAAAGGGCTTCTAATGGGATGAGTTCAGTGAGAATAATAGTCAGAACTATTTTAGGGTTTTTGATGGTGATGACCATGAAGATAATTAGTGCACAAAGATCCAAGATGTAA
Protein sequence
MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDGDEHVTTSTISNYCFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLMVMTMKIISAQRSKM*
Homology
BLAST of CSPI04G04480 vs. ExPASy TrEMBL
Match:
A0A0A0KWE7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1)
HSP 1 Score: 268.1 bits (684), Expect = 2.0e-68
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0
Query: 1 MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDGDEHVTTSTISNYC 60
MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDGDEHVTTSTISNYC
Sbjct: 1 MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDGDEHVTTSTISNYC 60
Query: 61 FPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLMV 120
FPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLMV
Sbjct: 61 FPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLMV 120
Query: 121 MTMKIISAQRSKM 134
MTMKIISAQRSKM
Sbjct: 121 MTMKIISAQRSKM 133
BLAST of CSPI04G04480 vs. ExPASy TrEMBL
Match:
A0A5D3CZU0 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold130G00110 PE=4 SV=1)
HSP 1 Score: 211.5 bits (537), Expect = 2.2e-51
Identity = 115/133 (86.47%), Postives = 118/133 (88.72%), Query Frame = 0
Query: 1 MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDGDEHVTTSTISNYC 60
MSVSLEALAMAGIDSNEW MDA+EWERNEIDVVPPHLLADEEDDEDG+ TSTISNYC
Sbjct: 1 MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGE--YVTSTISNYC 60
Query: 61 FPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLMV 120
F VDGSF GWR RD KADG ILGIF SLSKVIEKRASNGM+SVRIIVRTILGFLMV
Sbjct: 61 FRVDGSFGGWRRRDWKADG--ALRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMV 120
Query: 121 MTMKIISAQRSKM 134
MTMKIISAQRSKM
Sbjct: 121 MTMKIISAQRSKM 129
BLAST of CSPI04G04480 vs. ExPASy TrEMBL
Match:
A0A5A7TS68 (Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G004640 PE=4 SV=1)
HSP 1 Score: 196.8 bits (499), Expect = 5.7e-47
Identity = 105/122 (86.07%), Postives = 108/122 (88.52%), Query Frame = 0
Query: 1 MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDGDEHVTTSTISNYC 60
MSVSLEALAMAGIDSNEW MDA+EWERNEIDVVPPHLLADEEDDEDG+ TSTISNYC
Sbjct: 1 MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGE--YVTSTISNYC 60
Query: 61 FPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLMV 120
F VDGSF GWR RD KADG H ILGIF SLSKVIEKRASNGM+SVRIIVRTILGFLMV
Sbjct: 61 FRVDGSFGGWRRRDWKADG--AHRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMV 118
Query: 121 MT 123
MT
Sbjct: 121 MT 118
BLAST of CSPI04G04480 vs. ExPASy TrEMBL
Match:
A0A6J1FX98 (uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC111447880 PE=4 SV=1)
HSP 1 Score: 114.4 bits (285), Expect = 3.7e-22
Identity = 70/139 (50.36%), Postives = 88/139 (63.31%), Query Frame = 0
Query: 1 MSVSLEALAMAGIDSNEWAMDAEEWERNEIDV-VPPHLLADEEDDEDGDEHVTTSTISNY 60
MSVSLEALAMAGIDSNEWAMDAEEWERNE++ +PPHLLADE+D+ED
Sbjct: 1 MSVSLEALAMAGIDSNEWAMDAEEWERNEMEKDIPPHLLADEDDEED------------- 60
Query: 61 CFPVDGSFEGWRGRDCKADGGHGHGILGIFCS------LSKVIEKRASNGMSSVRIIVRT 120
+ F R C+ D G G G+ CS L K+ EKR N +SS+ I+
Sbjct: 61 --EMSTKFPATRCSCCRKDDGVG----GVSCSPTIMWHLRKITEKRDLNCLSSMEIVTSA 120
Query: 121 ILGFLMVMTMKIISAQRSK 133
++GFLM MT+KII+++RSK
Sbjct: 121 VVGFLMFMTIKIIASKRSK 120
BLAST of CSPI04G04480 vs. ExPASy TrEMBL
Match:
A0A5N6Q1H5 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_01585 PE=4 SV=1)
HSP 1 Score: 68.6 bits (166), Expect = 2.3e-08
Identity = 38/72 (52.78%), Postives = 45/72 (62.50%), Query Frame = 0
Query: 1 MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLAD----EEDDEDGDEHVTTSTI 60
MS SLEALAMAG+D NEW MD EEWER ++ PPHL AD +E D + DE V T
Sbjct: 95 MSFSLEALAMAGVDYNEWGMDLEEWERMKMGPPPPHLYADDYEEQEHDHERDEEVIMITA 154
Query: 61 SNYCFPVDGSFE 69
+N + GS E
Sbjct: 155 TNVTHELCGSKE 166
BLAST of CSPI04G04480 vs. NCBI nr
Match:
TYK16880.1 (Tetratricopeptide-like helical [Cucumis melo var. makuwa])
HSP 1 Score: 211.5 bits (537), Expect = 4.6e-51
Identity = 115/133 (86.47%), Postives = 118/133 (88.72%), Query Frame = 0
Query: 1 MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDGDEHVTTSTISNYC 60
MSVSLEALAMAGIDSNEW MDA+EWERNEIDVVPPHLLADEEDDEDG+ TSTISNYC
Sbjct: 1 MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGE--YVTSTISNYC 60
Query: 61 FPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLMV 120
F VDGSF GWR RD KADG ILGIF SLSKVIEKRASNGM+SVRIIVRTILGFLMV
Sbjct: 61 FRVDGSFGGWRRRDWKADG--ALRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMV 120
Query: 121 MTMKIISAQRSKM 134
MTMKIISAQRSKM
Sbjct: 121 MTMKIISAQRSKM 129
BLAST of CSPI04G04480 vs. NCBI nr
Match:
KAA0044707.1 (Tetratricopeptide-like helical [Cucumis melo var. makuwa])
HSP 1 Score: 196.8 bits (499), Expect = 1.2e-46
Identity = 105/122 (86.07%), Postives = 108/122 (88.52%), Query Frame = 0
Query: 1 MSVSLEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLADEEDDEDGDEHVTTSTISNYC 60
MSVSLEALAMAGIDSNEW MDA+EWERNEIDVVPPHLLADEEDDEDG+ TSTISNYC
Sbjct: 1 MSVSLEALAMAGIDSNEWGMDAQEWERNEIDVVPPHLLADEEDDEDGE--YVTSTISNYC 60
Query: 61 FPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLMV 120
F VDGSF GWR RD KADG H ILGIF SLSKVIEKRASNGM+SVRIIVRTILGFLMV
Sbjct: 61 FRVDGSFGGWRRRDWKADG--AHRILGIFYSLSKVIEKRASNGMNSVRIIVRTILGFLMV 118
Query: 121 MT 123
MT
Sbjct: 121 MT 118
BLAST of CSPI04G04480 vs. NCBI nr
Match:
KAG6577295.1 (hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 161.8 bits (408), Expect = 4.2e-36
Identity = 94/135 (69.63%), Postives = 102/135 (75.56%), Query Frame = 0
Query: 1 MSVSLEALAMAGIDSNEWAMDAEEWERNEID-VVPPHLLADEEDDEDGDEHVTTSTISNY 60
MSVSLEALAMAGI SNEWAMDAEEWERNEI+ VPPHLLADE+DD+D TST+SNY
Sbjct: 1 MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDN----VTSTVSNY 60
Query: 61 CFPVDGSFEGWRGRDCKADGGHG-HGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFL 120
FPV G F+ R D G H H GI CSLSK +EKRASNGMSSVRIIVRTILGFL
Sbjct: 61 SFPVAGFFDSLRRED---GGAHDIHCFWGILCSLSKSLEKRASNGMSSVRIIVRTILGFL 120
Query: 121 MVMTMKIISAQRSKM 134
+V +KIISA S M
Sbjct: 121 LVKILKIISAHTSNM 128
BLAST of CSPI04G04480 vs. NCBI nr
Match:
KAG7015383.1 (hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyrosperma])
HSP 1 Score: 161.0 bits (406), Expect = 7.1e-36
Identity = 93/134 (69.40%), Postives = 101/134 (75.37%), Query Frame = 0
Query: 1 MSVSLEALAMAGIDSNEWAMDAEEWERNEID-VVPPHLLADEEDDEDGDEHVTTSTISNY 60
MSVSLEALAMAGI SNEWAMDAEEWERNEI+ VPPHLLADE+DD+D TST+SNY
Sbjct: 1 MSVSLEALAMAGITSNEWAMDAEEWERNEIENDVPPHLLADEDDDDDN----VTSTVSNY 60
Query: 61 CFPVDGSFEGWRGRDCKADGGHGHGILGIFCSLSKVIEKRASNGMSSVRIIVRTILGFLM 120
FPV G F+ D AD H GI CSLSK +EKRASNGMSSVRIIVRTILGFL+
Sbjct: 61 SFPVAGFFDSLHREDGGAD--DIHCFWGILCSLSKSLEKRASNGMSSVRIIVRTILGFLL 120
Query: 121 VMTMKIISAQRSKM 134
V +KIISA S M
Sbjct: 121 VKILKIISAHTSNM 128
BLAST of CSPI04G04480 vs. NCBI nr
Match:
XP_022943015.1 (uncharacterized protein LOC111447880 [Cucurbita moschata])
HSP 1 Score: 114.4 bits (285), Expect = 7.7e-22
Identity = 70/139 (50.36%), Postives = 88/139 (63.31%), Query Frame = 0
Query: 1 MSVSLEALAMAGIDSNEWAMDAEEWERNEIDV-VPPHLLADEEDDEDGDEHVTTSTISNY 60
MSVSLEALAMAGIDSNEWAMDAEEWERNE++ +PPHLLADE+D+ED
Sbjct: 1 MSVSLEALAMAGIDSNEWAMDAEEWERNEMEKDIPPHLLADEDDEED------------- 60
Query: 61 CFPVDGSFEGWRGRDCKADGGHGHGILGIFCS------LSKVIEKRASNGMSSVRIIVRT 120
+ F R C+ D G G G+ CS L K+ EKR N +SS+ I+
Sbjct: 61 --EMSTKFPATRCSCCRKDDGVG----GVSCSPTIMWHLRKITEKRDLNCLSSMEIVTSA 120
Query: 121 ILGFLMVMTMKIISAQRSK 133
++GFLM MT+KII+++RSK
Sbjct: 121 VVGFLMFMTIKIIASKRSK 120
BLAST of CSPI04G04480 vs. TAIR 10
Match:
AT2G22320.1 (unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 49.3 bits (116), Expect = 2.8e-06
Identity = 28/52 (53.85%), Postives = 33/52 (63.46%), Query Frame = 0
Query: 5 LEALAMAGIDSNEWAMDAEEWERNEIDVVPPHLLAD-------EEDDEDGDE 50
+EALAMAG+D EW + EEWE E VVP HLLAD EED +D D+
Sbjct: 1 MEALAMAGVDYQEWGLSIEEWELQE-SVVPLHLLADDFKEEEQEEDHQDNDD 51
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KWE7 | 2.0e-68 | 100.00 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G026810 PE=4 SV=1 | [more] |
| A0A5D3CZU0 | 2.2e-51 | 86.47 | Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... | [more] |
| A0A5A7TS68 | 5.7e-47 | 86.07 | Tetratricopeptide-like helical OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... | [more] |
| A0A6J1FX98 | 3.7e-22 | 50.36 | uncharacterized protein LOC111447880 OS=Cucurbita moschata OX=3662 GN=LOC1114478... | [more] |
| A0A5N6Q1H5 | 2.3e-08 | 52.78 | Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_01585 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| TYK16880.1 | 4.6e-51 | 86.47 | Tetratricopeptide-like helical [Cucumis melo var. makuwa] | [more] |
| KAA0044707.1 | 1.2e-46 | 86.07 | Tetratricopeptide-like helical [Cucumis melo var. makuwa] | [more] |
| KAG6577295.1 | 4.2e-36 | 69.63 | hypothetical protein SDJN03_24869, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
| KAG7015383.1 | 7.1e-36 | 69.40 | hypothetical protein SDJN02_23018, partial [Cucurbita argyrosperma subsp. argyro... | [more] |
| XP_022943015.1 | 7.7e-22 | 50.36 | uncharacterized protein LOC111447880 [Cucurbita moschata] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT2G22320.1 | 2.8e-06 | 53.85 | unknown protein; Has 7 Blast hits to 7 proteins in 4 species: Archae - 0; Bacter... | [more] |
