CSPI04G00900 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI04G00900
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	U1 small nuclear ribonucleoprotein A
Location	Chr4: 483295 .. 486540 (-)
RNA-Seq Expression	CSPI04G00900
Synteny	CSPI04G00900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCTTTCATTTTCAGTCACTGTCGGACCGGCCAGACCTCTTGCGAGCGGAGTGGCATTGCATGTATCGGACCGAGACCTCGTTTCTCCGCTTTTCCATTTGAGCATTTCTATTCTACGGACAGAGGTGAAAGAAATGGCGGAGGTCACCACCACTGGCAACGAAGTTCCTCCCAACATGACCATATACATTAACAATCTCAACGAGAAAATCAAGCTGGAAGGTATTATTGAGTGGAGCAGCGGGATATGTAAACTTCTTTAATGCTCTGAATTATGTTATGATTATTTTATTTTTTTTCCTCCTTGGTGGAGCAGAGCTGAAGAAGTCGCTGAACGCGGTGTTCTCGCAGTTCGGGAAGATTCTGGAAGTGTTGGCTTTCAAGACCTTGAAGCACAAGGGACAGGCTTGGGTTGTGTTCGAAGAAGTATCTTCTGCGACTAATGCGCTTAGACAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATGGTAATGTGCTTGCTTTTTTTTTTTCTTTTTCCAATTTCTAGAATTTTAATTTCTTTTTGCTAAATTCAGGGTGAAGATGAAGGGCTAGACTTGAACCTTACTGAAAAAGATCTTTATTATTCGTATGAGCACTTGTGCTAATTAAAGCGATAGTGACGAATTAGAAAGTGCCGATGTATTCTTCTGAGCAACTAATAGGAATTGTCTTTAGATTATGTTTCATCTTATCTTAAAAAAGTTGAGATTTACTTACACATGGCTGTTAAATAATCTGGTTCATTGCCTAACTGATGTTCTGATCTACATATAATATACAATGAATTTTCATAGCTGATATTATTCCGGAGAGGTTCAAGAACAACTATTGTTTGAATGATCGACCATGTAATAGAATAAGCTCTGAGCAGTTGATCTTGAAGTGTTTACTTCTTCAATATATCACATTGCAGGCGTTTGAATTTACTTCACCTAAGCTTTATGACATTGGTTCTTATCAGTTTGACGCACATCAAGTGGTTGTCTAACATGGCTTCTGCAAATCTTTTGAAAATTTTATATCTGTTTAGCATTTCTTGTTTGTAGATCTGGTGGCTAATTTCCATATTTTCTTTGTGTTTATGAAAATTCTATATCTGTTTAGCATTTCAGATGGCTTTTTATATTATTTATTGCTCTGTTCTATCATTTATCTTTTGTTAGCTGGACAAAGCTTTTTTGTGGGAGTATGGTGCAATATGAAGCTAAGTGATGTTGTTTTGCAATCTTGTAGAGAATACAATATGCAAAGACAAAATCAGATATAATTGCAAAGTCTGACGGTTCATTTGTTCCTCGGGAGAAGCGAAAGAGGCACGAGGAAAAGGGTATAGTTTGTCTTTCTTTTCTATTTGACAGTTCAAATTTGAATATGTTTGAACAGTTCGGTACATGAAGATTTGTATCAGCATTTCATCCGATAAATTGATAGGAACTCCCTTAGGTATATTAGTCAATAGCTAGGAGAGTTTGTTATGAAATGTGGTTATAAATGAAGGTTAAGGGAATGAGAAAGGCAAGCAATGTTTTAGTGACTGGTTTTGGGGTCAGAGAGTTATCGGGAGTGGGAGGGACCAACTTGCAAGTACCTTGAACATTTGTCTTATTTTGTAATTTCGTTCTCTTACCTTATTATTTATGTAACCTTATTTTCTCAAGATTTATTCATTTTCTTGATGTGGCAGGGAGGAAGAAGAAAGAGCAGCATGATGCGAATCAAGCTGGGATGGGTCTGAATCCTGCTTTTGCTGGAGCATATGGTGCAACAGCGGTAAGTATCTCTGTTTAATTCCTATGCATTAGTTTTTGGAATATTCTATTATTTGCATTCCATTGCATAGTGGTCTTCCATAATATTTCCATCCCTAACTTCAGATTTGAGACTTAGATTGATTCTCCAACGAAGTCACTTAAGATGTTATTTGTTTCTCTGTGGTTAAAAAATGTATTCTAAGTGCTTCATTGACATGATTGTAATTCTAAAGTATAAGATCATAAAGAACAAGAGTAGTGGAATATAAAGAGACAGAACTTCACTTCTTGAGGCCAATTTTGCTTATTAAGAATGATGCTCTCTCATTATTTCTCATTTCTCACCCTTTTCATTAATTTGTATGGTACTCTGTGAAATAGGGAGCACATCATTTTTTTACTCCCTCCCACGTAGTGAGTCCATTGTCAATTTCAGTAATTCTTTTGAATTTTATCTGCCTTTTTAGTTTATTGCGCAGAGAAAAGCATATATATAGAAAAAGATAATAAAAAACGTATATTGGGGTTTATTTGCATTTATTACTTTGGTCATTTTGTATATCATGATTGTTAAAGAACCCTTTGCCATGGTTCAACACTTTAATTTCTAGGACTTGGTGGCTGGTGTCTGCATCTGCATGAGTGGATGTACTCTTATATGCCTTTTATCTATTGACTGAGCATTTTAAGGTGGCACGTCTTTGTTGACTTTCATCATTTGAATAATTTGTGTACTGAATTATGTTTATTAATTGGAAAGTATTGATTGCTAACGAACACTCTCTCCTTTCCCTCTTCTGAAAATGGTGCAGCACTCTCAAGTACCTTATTCAGGTGGAGTTATGGTACCGGAAGCACCTGCCCCGCCCAATAGCATTTTGTTTGTACAAAATCTACCACACGAGACCACTCCAATGATGCTACAAATGCTTTTCTGTCAATATCCTGGTTTCAAGGAGGTTCGAATGGTTGAAGCAAAGCCAGGTATTGCATTTGTAGAATACAGTGATGAGGTACAATCAACAGTCGCCATGCAAGCACTACAAGGTTTCAAGATGAACCCACAAAATTCGATGTTGATAACCTATGCGAAGAAATAGGATAGAGTGAAACTTGGCCGAAAGCCACCTGCTATTATTCAATGCTTAGTACAGGAGATTGTTTGTAGAATACTGTCATCTCGTACTTGCTGGAAATTCTACCCCACCGCAACCTAATTAATACAATCAGATCAGTTCTCTTAAGCAGGAATAGAAGAGATCTTCAGATCCCGGTTACCATGATTATCATTGAACTTATAGTAAAGTTTGATTTCATCATCCCATTTTGTTCTCATTTTCATAGTAGTGTATTTCCTTCTAATTGTGCTGTAAAATAGACTAAAAGCTTTCATAACTGAGCTATTGAAGAGGTAATGATGTTGAGACCTAATTTGATAGACTTTATTTTAGTGAACAGCCAAGTTCTACT

mRNA sequence

GGCTTTCATTTTCAGTCACTGTCGGACCGGCCAGACCTCTTGCGAGCGGAGTGGCATTGCATGTATCGGACCGAGACCTCGTTTCTCCGCTTTTCCATTTGAGCATTTCTATTCTACGGACAGAGGTGAAAGAAATGGCGGAGGTCACCACCACTGGCAACGAAGTTCCTCCCAACATGACCATATACATTAACAATCTCAACGAGAAAATCAAGCTGGAAGAGCTGAAGAAGTCGCTGAACGCGGTGTTCTCGCAGTTCGGGAAGATTCTGGAAGTGTTGGCTTTCAAGACCTTGAAGCACAAGGGACAGGCTTGGGTTGTGTTCGAAGAAGTATCTTCTGCGACTAATGCGCTTAGACAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATGAGAATACAATATGCAAAGACAAAATCAGATATAATTGCAAAGTCTGACGGTTCATTTGTTCCTCGGGAGAAGCGAAAGAGGCACGAGGAAAAGGGGAGGAAGAAGAAAGAGCAGCATGATGCGAATCAAGCTGGGATGGGTCTGAATCCTGCTTTTGCTGGAGCATATGGTGCAACAGCGCACTCTCAAGTACCTTATTCAGGTGGAGTTATGGTACCGGAAGCACCTGCCCCGCCCAATAGCATTTTGTTTGTACAAAATCTACCACACGAGACCACTCCAATGATGCTACAAATGCTTTTCTGTCAATATCCTGGTTTCAAGGAGGTTCGAATGGTTGAAGCAAAGCCAGGTATTGCATTTGTAGAATACAGTGATGAGGTACAATCAACAGTCGCCATGCAAGCACTACAAGGTTTCAAGATGAACCCACAAAATTCGATGTTGATAACCTATGCGAAGAAATAGGATAGAGTGAAACTTGGCCGAAAGCCACCTGCTATTATTCAATGCTTAGTACAGGAGATTGTTTGTAGAATACTGTCATCTCGTACTTGCTGGAAATTCTACCCCACCGCAACCTAATTAATACAATCAGATCAGTTCTCTTAAGCAGGAATAGAAGAGATCTTCAGATCCCGGTTACCATGATTATCATTGAACTTATAGTAAAGTTTGATTTCATCATCCCATTTTGTTCTCATTTTCATAGTAGTGTATTTCCTTCTAATTGTGCTGTAAAATAGACTAAAAGCTTTCATAACTGAGCTATTGAAGAGGTAATGATGTTGAGACCTAATTTGATAGACTTTATTTTAGTGAACAGCCAAGTTCTACT

Coding sequence (CDS)

ATGGCGGAGGTCACCACCACTGGCAACGAAGTTCCTCCCAACATGACCATATACATTAACAATCTCAACGAGAAAATCAAGCTGGAAGAGCTGAAGAAGTCGCTGAACGCGGTGTTCTCGCAGTTCGGGAAGATTCTGGAAGTGTTGGCTTTCAAGACCTTGAAGCACAAGGGACAGGCTTGGGTTGTGTTCGAAGAAGTATCTTCTGCGACTAATGCGCTTAGACAGATGCAGGGTTTTCCTTTCTATGATAAGCCTATGAGAATACAATATGCAAAGACAAAATCAGATATAATTGCAAAGTCTGACGGTTCATTTGTTCCTCGGGAGAAGCGAAAGAGGCACGAGGAAAAGGGGAGGAAGAAGAAAGAGCAGCATGATGCGAATCAAGCTGGGATGGGTCTGAATCCTGCTTTTGCTGGAGCATATGGTGCAACAGCGCACTCTCAAGTACCTTATTCAGGTGGAGTTATGGTACCGGAAGCACCTGCCCCGCCCAATAGCATTTTGTTTGTACAAAATCTACCACACGAGACCACTCCAATGATGCTACAAATGCTTTTCTGTCAATATCCTGGTTTCAAGGAGGTTCGAATGGTTGAAGCAAAGCCAGGTATTGCATTTGTAGAATACAGTGATGAGGTACAATCAACAGTCGCCATGCAAGCACTACAAGGTTTCAAGATGAACCCACAAAATTCGATGTTGATAACCTATGCGAAGAAATAG

Protein sequence

MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGSFVPREKRKRHEEKGRKKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQGFKMNPQNSMLITYAKK*

Homology

[Close]

BLAST of CSPI04G00900 vs. ExPASy Swiss-Prot
Match: Q39244 (U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana OX=3702 GN=U1A PE=1 SV=1)

HSP 1 Score: 351.7 bits (901), Expect = 6.8e-96
Identity = 180/241 (74.69%), Postives = 206/241 (85.48%), Query Frame = 0


Query: 8   GNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEV 67
           G+EV PN TIYINNLNEK+KL+ELKKSLNAVFSQFGKILE+LAFKT KHKGQAWVVF+  
Sbjct: 11  GSEVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNT 70

Query: 68  SSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGSFVPREKRKRHEEKG---RKKKE 127
            SA+ A+ +M  FPFYDK MRIQYAKTKSD++AK+DG+FVPREKRKRHEEKG   +KK +
Sbjct: 71  ESASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQ 130

Query: 128 QHDANQAGMGLNPAFAGAYGATAH-SQVPYSGGVM--VPEAPAPPNSILFVQNLPHETTP 187
            HD+ Q GM +N A+ G YGA    SQVPY GG+   +PEAPAPPN+ILFVQNLPHETTP
Sbjct: 131 HHDSTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAPAPPNNILFVQNLPHETTP 190

Query: 188 MMLQMLFCQYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQGFKMNPQNSMLITYAK 243
           M+LQMLFCQY GFKEVRM+EAKPGIAFVE++DE+QSTVAMQ LQGFK+  QN MLITYAK
Sbjct: 191 MVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQ-QNQMLITYAK 250

[Close]

BLAST of CSPI04G00900 vs. ExPASy Swiss-Prot
Match: A2Y0J7 (U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica OX=39946 GN=OsI_18512 PE=3 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 1.3e-91
Identity = 177/239 (74.06%), Postives = 203/239 (84.94%), Query Frame = 0


Query: 9   NEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVS 68
           N  PPN+TIYINNLNEKIKLEELKKSL AVFSQFGKIL+VLAFKTLKHKGQAWVVFE+V+
Sbjct: 17  NGAPPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVA 76

Query: 69  SATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGSFVPREKRKRHEEKGRKK---KEQ 128
           SAT AL+ MQ FPF++KPMRIQYAKTKSDIIAK+DG+FVPRE+RKR++EK  KK   ++ 
Sbjct: 77  SATEALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQKREQH 136

Query: 129 HDANQAGMGLNPAFAGAYGATAHSQVPYSGG--VMVPEAPAPPNSILFVQNLPHETTPMM 188
           HD +Q G+G+N A+ G YGA   SQ+P++G   VM+PE    PN+ILFVQNLPHETTPMM
Sbjct: 137 HDVSQVGLGVN-AYPGVYGAPPLSQLPFAGAQKVMMPEI-IVPNNILFVQNLPHETTPMM 196

Query: 189 LQMLFCQYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           LQMLFCQYPGFKEVRMVEAKPGIAFVEY DE Q+T AM  LQGFK+   N MLI+YAKK
Sbjct: 197 LQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYAKK 253

[Close]

BLAST of CSPI04G00900 vs. ExPASy Swiss-Prot
Match: Q0DKM4 (U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0154800 PE=3 SV=1)

HSP 1 Score: 337.4 bits (864), Expect = 1.3e-91
Identity = 177/239 (74.06%), Postives = 203/239 (84.94%), Query Frame = 0


Query: 9   NEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVS 68
           N  PPN+TIYINNLNEKIKLEELKKSL AVFSQFGKIL+VLAFKTLKHKGQAWVVFE+V+
Sbjct: 17  NGAPPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVA 76

Query: 69  SATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGSFVPREKRKRHEEKGRKK---KEQ 128
           SAT AL+ MQ FPF++KPMRIQYAKTKSDIIAK+DG+FVPRE+RKR++EK  KK   ++ 
Sbjct: 77  SATEALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQKREQH 136

Query: 129 HDANQAGMGLNPAFAGAYGATAHSQVPYSGG--VMVPEAPAPPNSILFVQNLPHETTPMM 188
           HD +Q G+G+N A+ G YGA   SQ+P++G   VM+PE    PN+ILFVQNLPHETTPMM
Sbjct: 137 HDVSQVGLGVN-AYPGVYGAPPLSQLPFAGAQKVMMPEI-IVPNNILFVQNLPHETTPMM 196

Query: 189 LQMLFCQYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           LQMLFCQYPGFKEVRMVEAKPGIAFVEY DE Q+T AM  LQGFK+   N MLI+YAKK
Sbjct: 197 LQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYAKK 253

[Close]

BLAST of CSPI04G00900 vs. ExPASy Swiss-Prot
Match: O22922 (U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana OX=3702 GN=U2B'' PE=1 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 2.3e-72
Identity = 137/233 (58.80%), Postives = 184/233 (78.97%), Query Frame = 0


Query: 10  EVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSS 69
           ++PPN +IYI NLNE+IK EELK+SL  +FSQFG+IL+V+A KT K +GQAWV F EV++
Sbjct: 5   DIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTA 64

Query: 70  ATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGSFVPREKRKRHEEKGRKKKEQHDAN 129
           A +A+RQMQ FPFYDKPMR+QYAK KSD +AK++G+FVP++K+++ EEK  +K+E  D+ 
Sbjct: 65  AGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKRE--DSQ 124

Query: 130 QAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFC 189
           +      P+   A G +A++ VP        +   PPN+ILF+QNLPHETT MMLQ+LF 
Sbjct: 125 RPNTANGPS---ANGPSANNGVPAPSFQPSGQETMPPNNILFIQNLPHETTSMMLQLLFE 184

Query: 190 QYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           QYPGFKE+RM++AKPGIAFVEY D+VQ+++AMQ LQGFK+ PQN M+I++AKK
Sbjct: 185 QYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]

BLAST of CSPI04G00900 vs. ExPASy Swiss-Prot
Match: Q8H1S6 (U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana OX=3702 GN=At1g06960 PE=1 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 3.4e-71
Identity = 136/233 (58.37%), Postives = 178/233 (76.39%), Query Frame = 0


Query: 10  EVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSS 69
           ++PPN +IYI ++NEKIK EELK+SL  +FSQFG++L+V+A KT K +GQAWVVF EV++
Sbjct: 5   DIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTA 64

Query: 70  ATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGSFVPREKRKRHEEKGRKKKEQHDAN 129
           A+NA+RQMQ FPFYDKPMRIQYAK+KSD + K++GSFVP+EK+ + EEK  +K+   +  
Sbjct: 65  ASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHAEETQ 124

Query: 130 QAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFC 189
           Q  M          GAT  + +P        +   PPN+ILF+ NLP ET  MMLQ+LF 
Sbjct: 125 QPSM--------PNGATTQNGMPVPPFQPSGQDTMPPNNILFIHNLPIETNSMMLQLLFE 184

Query: 190 QYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           QYPGFKE+RM+EAKPGIAFVEY D+VQS++AMQALQGFK+ PQN M++++AKK
Sbjct: 185 QYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]

BLAST of CSPI04G00900 vs. ExPASy TrEMBL
Match: A0A0A0KWK4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G001840 PE=4 SV=1)

HSP 1 Score: 476.9 bits (1226), Expect = 5.2e-131
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0


Query: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGSFVPREKRKRHEEKGR 120
           WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGSFVPREKRKRHEEKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGSFVPREKRKRHEEKGR 120

Query: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180
           KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT
Sbjct: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQGFKMNPQNSMLITYA 240
           PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 243
           KK
Sbjct: 241 KK 242

[Close]

BLAST of CSPI04G00900 vs. ExPASy TrEMBL
Match: A0A5D3E0R3 (U1 small nuclear ribonucleoprotein A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001140 PE=4 SV=1)

HSP 1 Score: 474.2 bits (1219), Expect = 3.3e-130
Identity = 240/242 (99.17%), Postives = 241/242 (99.59%), Query Frame = 0


Query: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGSFVPREKRKRHEEKGR 120
           WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDG+FVPREKRKRHEEKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR 120

Query: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180
           KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT
Sbjct: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQGFKMNPQNSMLITYA 240
           PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEY DEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 243
           KK
Sbjct: 241 KK 242

[Close]

BLAST of CSPI04G00900 vs. ExPASy TrEMBL
Match: A0A1S3BYG3 (U1 small nuclear ribonucleoprotein A OS=Cucumis melo OX=3656 GN=LOC103494765 PE=4 SV=1)

HSP 1 Score: 474.2 bits (1219), Expect = 3.3e-130
Identity = 240/242 (99.17%), Postives = 241/242 (99.59%), Query Frame = 0


Query: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGSFVPREKRKRHEEKGR 120
           WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDG+FVPREKRKRHEEKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR 120

Query: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180
           KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT
Sbjct: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQGFKMNPQNSMLITYA 240
           PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEY DEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 243
           KK
Sbjct: 241 KK 242

[Close]

BLAST of CSPI04G00900 vs. ExPASy TrEMBL
Match: A0A5A7TMM0 (U1 small nuclear ribonucleoprotein A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G001120 PE=4 SV=1)

HSP 1 Score: 469.5 bits (1207), Expect = 8.2e-129
Identity = 240/243 (98.77%), Postives = 241/243 (99.18%), Query Frame = 0


Query: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLE-ELKKSLNAVFSQFGKILEVLAFKTLKHKGQ 60
           MAEVTTTGNEVPPNMTIYINNLNEKIKLE ELKKSLNAVFSQFGKILEVLAFKTLKHKGQ
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEAELKKSLNAVFSQFGKILEVLAFKTLKHKGQ 60

Query: 61  AWVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGSFVPREKRKRHEEKG 120
           AWVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDG+FVPREKRKRHEEKG
Sbjct: 61  AWVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKG 120

Query: 121 RKKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHET 180
           RKKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHET
Sbjct: 121 RKKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHET 180

Query: 181 TPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQGFKMNPQNSMLITY 240
           TPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEY DEVQSTVAMQALQGFKMNPQNSMLITY
Sbjct: 181 TPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITY 240

Query: 241 AKK 243
           AKK
Sbjct: 241 AKK 243

[Close]

BLAST of CSPI04G00900 vs. ExPASy TrEMBL
Match: A0A6J1K6I0 (U1 small nuclear ribonucleoprotein A-like OS=Cucurbita maxima OX=3661 GN=LOC111492748 PE=4 SV=1)

HSP 1 Score: 466.5 bits (1199), Expect = 7.0e-128
Identity = 232/242 (95.87%), Postives = 240/242 (99.17%), Query Frame = 0


Query: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEV +TGNE+PPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVNSTGNEIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGSFVPREKRKRHEEKGR 120
           WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSD+I+KSDG+FVPREKRKRHEEKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDVISKSDGTFVPREKRKRHEEKGR 120

Query: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180
           KKKEQHDANQAGMG+NPAF GAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT
Sbjct: 121 KKKEQHDANQAGMGMNPAFGGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQGFKMNPQNSMLITYA 240
           PMMLQMLFCQYPGFKEVRM+EAKPGIAFVEY+DEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYADEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 243
           KK
Sbjct: 241 KK 242

[Close]

BLAST of CSPI04G00900 vs. NCBI nr
Match: XP_011652939.1 (U1 small nuclear ribonucleoprotein A [Cucumis sativus] >KGN52817.1 hypothetical protein Csa_014424 [Cucumis sativus])

HSP 1 Score: 476.9 bits (1226), Expect = 1.1e-130
Identity = 242/242 (100.00%), Postives = 242/242 (100.00%), Query Frame = 0


Query: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGSFVPREKRKRHEEKGR 120
           WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGSFVPREKRKRHEEKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGSFVPREKRKRHEEKGR 120

Query: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180
           KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT
Sbjct: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQGFKMNPQNSMLITYA 240
           PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 243
           KK
Sbjct: 241 KK 242

[Close]

BLAST of CSPI04G00900 vs. NCBI nr
Match: XP_008454331.1 (PREDICTED: U1 small nuclear ribonucleoprotein A [Cucumis melo] >TYK29512.1 U1 small nuclear ribonucleoprotein A [Cucumis melo var. makuwa])

HSP 1 Score: 474.2 bits (1219), Expect = 6.9e-130
Identity = 240/242 (99.17%), Postives = 241/242 (99.59%), Query Frame = 0


Query: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGSFVPREKRKRHEEKGR 120
           WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDG+FVPREKRKRHEEKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR 120

Query: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180
           KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT
Sbjct: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQGFKMNPQNSMLITYA 240
           PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEY DEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 243
           KK
Sbjct: 241 KK 242

[Close]

BLAST of CSPI04G00900 vs. NCBI nr
Match: KAA0044384.1 (U1 small nuclear ribonucleoprotein A [Cucumis melo var. makuwa])

HSP 1 Score: 469.5 bits (1207), Expect = 1.7e-128
Identity = 240/243 (98.77%), Postives = 241/243 (99.18%), Query Frame = 0


Query: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLE-ELKKSLNAVFSQFGKILEVLAFKTLKHKGQ 60
           MAEVTTTGNEVPPNMTIYINNLNEKIKLE ELKKSLNAVFSQFGKILEVLAFKTLKHKGQ
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEAELKKSLNAVFSQFGKILEVLAFKTLKHKGQ 60

Query: 61  AWVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGSFVPREKRKRHEEKG 120
           AWVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDG+FVPREKRKRHEEKG
Sbjct: 61  AWVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKG 120

Query: 121 RKKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHET 180
           RKKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHET
Sbjct: 121 RKKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHET 180

Query: 181 TPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQGFKMNPQNSMLITY 240
           TPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEY DEVQSTVAMQALQGFKMNPQNSMLITY
Sbjct: 181 TPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITY 240

Query: 241 AKK 243
           AKK
Sbjct: 241 AKK 243

[Close]

BLAST of CSPI04G00900 vs. NCBI nr
Match: XP_038906378.1 (U1 small nuclear ribonucleoprotein A [Benincasa hispida])

HSP 1 Score: 469.2 bits (1206), Expect = 2.2e-128
Identity = 237/242 (97.93%), Postives = 239/242 (98.76%), Query Frame = 0


Query: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEV +TGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVNSTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGSFVPREKRKRHEEKGR 120
           WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDG+FVPREKRKRHEEKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR 120

Query: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180
           KKKEQHDANQAGMGLNPAFAGAYGAT HSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT
Sbjct: 121 KKKEQHDANQAGMGLNPAFAGAYGATVHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQGFKMNPQNSMLITYA 240
           PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEY DEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 243
           KK
Sbjct: 241 KK 242

[Close]

BLAST of CSPI04G00900 vs. NCBI nr
Match: XP_022948748.1 (U1 small nuclear ribonucleoprotein A-like [Cucurbita moschata] >XP_022997952.1 U1 small nuclear ribonucleoprotein A-like [Cucurbita maxima] >XP_023524504.1 U1 small nuclear ribonucleoprotein A [Cucurbita pepo subsp. pepo] >KAG7036660.1 U1 small nuclear ribonucleoprotein A [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 466.5 bits (1199), Expect = 1.4e-127
Identity = 232/242 (95.87%), Postives = 240/242 (99.17%), Query Frame = 0


Query: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEV +TGNE+PPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVNSTGNEIPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGSFVPREKRKRHEEKGR 120
           WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSD+I+KSDG+FVPREKRKRHEEKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDVISKSDGTFVPREKRKRHEEKGR 120

Query: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180
           KKKEQHDANQAGMG+NPAF GAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT
Sbjct: 121 KKKEQHDANQAGMGMNPAFGGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQGFKMNPQNSMLITYA 240
           PMMLQMLFCQYPGFKEVRM+EAKPGIAFVEY+DEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMIEAKPGIAFVEYADEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 243
           KK
Sbjct: 241 KK 242

[Close]

BLAST of CSPI04G00900 vs. TAIR 10
Match: AT2G47580.1 (spliceosomal protein U1A )

HSP 1 Score: 351.7 bits (901), Expect = 4.8e-97
Identity = 180/241 (74.69%), Postives = 206/241 (85.48%), Query Frame = 0


Query: 8   GNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEV 67
           G+EV PN TIYINNLNEK+KL+ELKKSLNAVFSQFGKILE+LAFKT KHKGQAWVVF+  
Sbjct: 11  GSEVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNT 70

Query: 68  SSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGSFVPREKRKRHEEKG---RKKKE 127
            SA+ A+ +M  FPFYDK MRIQYAKTKSD++AK+DG+FVPREKRKRHEEKG   +KK +
Sbjct: 71  ESASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQ 130

Query: 128 QHDANQAGMGLNPAFAGAYGATAH-SQVPYSGGVM--VPEAPAPPNSILFVQNLPHETTP 187
            HD+ Q GM +N A+ G YGA    SQVPY GG+   +PEAPAPPN+ILFVQNLPHETTP
Sbjct: 131 HHDSTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAPAPPNNILFVQNLPHETTP 190

Query: 188 MMLQMLFCQYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQGFKMNPQNSMLITYAK 243
           M+LQMLFCQY GFKEVRM+EAKPGIAFVE++DE+QSTVAMQ LQGFK+  QN MLITYAK
Sbjct: 191 MVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQ-QNQMLITYAK 250

[Close]

BLAST of CSPI04G00900 vs. TAIR 10
Match: AT2G30260.1 (U2 small nuclear ribonucleoprotein B )

HSP 1 Score: 273.5 bits (698), Expect = 1.7e-73
Identity = 137/233 (58.80%), Postives = 184/233 (78.97%), Query Frame = 0


Query: 10  EVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSS 69
           ++PPN +IYI NLNE+IK EELK+SL  +FSQFG+IL+V+A KT K +GQAWV F EV++
Sbjct: 5   DIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTA 64

Query: 70  ATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGSFVPREKRKRHEEKGRKKKEQHDAN 129
           A +A+RQMQ FPFYDKPMR+QYAK KSD +AK++G+FVP++K+++ EEK  +K+E  D+ 
Sbjct: 65  AGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKRE--DSQ 124

Query: 130 QAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFC 189
           +      P+   A G +A++ VP        +   PPN+ILF+QNLPHETT MMLQ+LF 
Sbjct: 125 RPNTANGPS---ANGPSANNGVPAPSFQPSGQETMPPNNILFIQNLPHETTSMMLQLLFE 184

Query: 190 QYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           QYPGFKE+RM++AKPGIAFVEY D+VQ+++AMQ LQGFK+ PQN M+I++AKK
Sbjct: 185 QYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]

BLAST of CSPI04G00900 vs. TAIR 10
Match: AT1G06960.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 269.6 bits (688), Expect = 2.4e-72
Identity = 136/233 (58.37%), Postives = 178/233 (76.39%), Query Frame = 0


Query: 10  EVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSS 69
           ++PPN +IYI ++NEKIK EELK+SL  +FSQFG++L+V+A KT K +GQAWVVF EV++
Sbjct: 5   DIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTA 64

Query: 70  ATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGSFVPREKRKRHEEKGRKKKEQHDAN 129
           A+NA+RQMQ FPFYDKPMRIQYAK+KSD + K++GSFVP+EK+ + EEK  +K+   +  
Sbjct: 65  ASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHAEETQ 124

Query: 130 QAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFC 189
           Q  M          GAT  + +P        +   PPN+ILF+ NLP ET  MMLQ+LF 
Sbjct: 125 QPSM--------PNGATTQNGMPVPPFQPSGQDTMPPNNILFIHNLPIETNSMMLQLLFE 184

Query: 190 QYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           QYPGFKE+RM+EAKPGIAFVEY D+VQS++AMQALQGFK+ PQN M++++AKK
Sbjct: 185 QYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]

BLAST of CSPI04G00900 vs. TAIR 10
Match: AT1G06960.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 266.9 bits (681), Expect = 1.6e-71
Identity = 138/238 (57.98%), Postives = 180/238 (75.63%), Query Frame = 0


Query: 10  EVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSS 69
           ++PPN +IYI ++NEKIK EELK+SL  +FSQFG++L+V+A KT K +GQAWVVF EV++
Sbjct: 5   DIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTA 64

Query: 70  ATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGSFVPREKRKRHEEKGRKKKEQHDAN 129
           A+NA+RQMQ FPFYDKPMRIQYAK+KSD + K++GSFVP+EK+ + EEK  +K+   +  
Sbjct: 65  ASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHAEETQ 124

Query: 130 QAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPA-----PPNSILFVQNLPHETTPMML 189
           Q  M          GAT  + +P       P  P+     PPN+ILF+ NLP ET  MML
Sbjct: 125 QPSM--------PNGATTQNGMP------PPFQPSGQDTMPPNNILFIHNLPIETNSMML 184

Query: 190 QMLFCQYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           Q+LF QYPGFKE+RM+EAKPGIAFVEY D+VQS++AMQALQGFK+ PQN M++++AKK
Sbjct: 185 QLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 228

[Close]

BLAST of CSPI04G00900 vs. TAIR 10
Match: AT1G06960.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 229.2 bits (583), Expect = 3.6e-60
Identity = 116/202 (57.43%), Postives = 152/202 (75.25%), Query Frame = 0


Query: 41  QFGKILEVLAFKTLKHKGQAWVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIA 100
           +FG++L+V+A KT K +GQAWVVF EV++A+NA+RQMQ FPFYDKPMRIQYAK+KSD + 
Sbjct: 7   KFGRLLDVVALKTPKLRGQAWVVFTEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVT 66

Query: 101 KSDGSFVPREKRKRHEEKGRKKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVP 160
           K++GSFVP+EK+ + EEK  +K+   +  Q  M          GAT  + +P        
Sbjct: 67  KAEGSFVPKEKKMKQEEKVERKRHAEETQQPSM--------PNGATTQNGMPVPPFQPSG 126

Query: 161 EAPAPPNSILFVQNLPHETTPMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYSDEVQSTVA 220
           +   PPN+ILF+ NLP ET  MMLQ+LF QYPGFKE+RM+EAKPGIAFVEY D+VQS++A
Sbjct: 127 QDTMPPNNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMA 186

Query: 221 MQALQGFKMNPQNSMLITYAKK 243
           MQALQGFK+ PQN M++++AKK
Sbjct: 187 MQALQGFKITPQNPMVVSFAKK 200

The following BLAST results are available for this feature:

BLAST of CSPI04G00900 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39244	6.8e-96	74.69	U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana OX=3702 GN=U1A PE=1...	[more]
A2Y0J7	1.3e-91	74.06	U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica OX=39946 GN=O...	[more]
Q0DKM4	1.3e-91	74.06	U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]
O22922	2.3e-72	58.80	U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana OX=3702 GN=U2B'' ...	[more]
Q8H1S6	3.4e-71	58.37	U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana OX=3702 GN=At1g...	[more]

BLAST of CSPI04G00900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KWK4	5.2e-131	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G001840 PE=4 SV=1	[more]
A0A5D3E0R3	3.3e-130	99.17	U1 small nuclear ribonucleoprotein A OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3BYG3	3.3e-130	99.17	U1 small nuclear ribonucleoprotein A OS=Cucumis melo OX=3656 GN=LOC103494765 PE=...	[more]
A0A5A7TMM0	8.2e-129	98.77	U1 small nuclear ribonucleoprotein A OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A6J1K6I0	7.0e-128	95.87	U1 small nuclear ribonucleoprotein A-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]

BLAST of CSPI04G00900 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652939.1	1.1e-130	100.00	U1 small nuclear ribonucleoprotein A [Cucumis sativus] >KGN52817.1 hypothetical ...	[more]
XP_008454331.1	6.9e-130	99.17	PREDICTED: U1 small nuclear ribonucleoprotein A [Cucumis melo] >TYK29512.1 U1 sm...	[more]
KAA0044384.1	1.7e-128	98.77	U1 small nuclear ribonucleoprotein A [Cucumis melo var. makuwa]	[more]
XP_038906378.1	2.2e-128	97.93	U1 small nuclear ribonucleoprotein A [Benincasa hispida]	[more]
XP_022948748.1	1.4e-127	95.87	U1 small nuclear ribonucleoprotein A-like [Cucurbita moschata] >XP_022997952.1 U...	[more]

BLAST of CSPI04G00900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G47580.1	4.8e-97	74.69	spliceosomal protein U1A	[more]
AT2G30260.1	1.7e-73	58.80	U2 small nuclear ribonucleoprotein B	[more]
AT1G06960.1	2.4e-72	58.37	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G06960.2	1.6e-71	57.98	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G06960.3	3.6e-60	57.43	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 237..242
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..131
None	No IPR available	PANTHER	PTHR10501:SF46	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A	coord: 6..242
None	No IPR available	PANTHER	PTHR10501	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B	coord: 6..242
None	No IPR available	CDD	cd12246	RRM1_U1A_like	coord: 16..93 e-value: 4.69269E-51 score: 158.846
None	No IPR available	CDD	cd12247	RRM2_U1A_like	coord: 166..238 e-value: 2.31376E-38 score: 126.529
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 16..90 e-value: 1.4E-13 score: 61.1 coord: 169..238 e-value: 5.2E-10 score: 49.3
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 17..87 e-value: 1.6E-10 score: 40.6 coord: 170..230 e-value: 8.7E-13 score: 47.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 15..94 score: 14.538761
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 168..242 score: 12.372725
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 8..115 e-value: 1.3E-30 score: 107.6
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 157..242 e-value: 1.4E-20 score: 75.1
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 12..232

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G00900.1	CSPI04G00900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
cellular_component	GO:0005685	U1 snRNP
molecular_function	GO:0030619	U1 snRNA binding
molecular_function	GO:0003676	nucleic acid binding