CSPI04G00350 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI04G00350
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr4: 195535 .. 197022 (+)
RNA-Seq ExpressionCSPI04G00350
SyntenyCSPI04G00350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAATTTCCTTTTGTACTTAGGAATATCTGTCTTTTAAAATTTTAAATCTAAGAGAAAAGAAAAGAAAACAAGCTAAAATTTATATATATTTTATTTAGTTATAGTAGAAGGATGAAATAACAGAGGAGGGATGTGGAATAATGGAAAGGGGAAGCTCATGGGTTGGGAAGGAATATATGAAAAAAAAATACTCTGCCCTCCAATCTTCAAAAGCATGCTTTAAGGTATATCTTTTTATTAGATTCTATATATATTTTTCTATAATAAAATTGAGTAAATGATTTGTTTCCTCAAATTAAGATTTAATTCCTTCTGAAAAGATAACTTCAAGTCTTGTTAAGTTTAGGGGAGTCTAAATTCTATACTACTAAAATACCATATACTTAGCTAAGTTCTTATTCAAGAGAGAGACAATCAGGAGAAGTCTAAACGTTGTAAGTGCTTAAACTCTAAGCACATCCTCTAGGAATCTCTTCAAAAGGAAATTAATTTGTAAAATATATTTTATTGCACATGCTAATATTATATAATAAGAGGTTGGACACAATAGTTGATAGATAATTCCAAACTTGGACACAATAGTTGATAGATCTATTATATATTGACAAGTCCCTTGCTATTATTGTTATTTATTCTAGTTGATTTTGAGGATAAGAAGAGGAGTGGTTGAAAAGAGATGATCTATTATTAAAATATAAATTAAATATGTATTGGGATAAGATAGTATTTAGGATTATTCAAACTATACCTTAAAATAATTATACACTAAGCAGAGATAAATTAAATATGCAAATGAATTATTGAAGCTCTCGCCTTTCACATTTTTGGTTATAAATAGAAGGGAAATACAAAGCATAGGGAGGAAGATAATATATAGAAAGAGAGGAAGGAGAAAAGAAAATAGTAAGAAAATGAAGAGGATGGATAAGAACATTGGTTTGGCCGTGGCCACGATGATGGTGATGATGCTTCTGATTGCTACTGTCGTGGAATCAGCCTCTCCTACCGAGAAGATCACGATGATCGAACTCGTCACCAACCACCATGCTGCCAGTTCTTTTCCACGCAAAATGATGAGAAATGGGAAAGGAAATGGAGTTTGTCCCATAATAGGTTGGCCTTGCAATCCTGAGTACGGCGGCTGTGGCCCTTTCTCCGACACTTGTGCTTGCTACACTGCTGGACATTGTGGAGATTTCGTTGGTTGAAGCTGCACTTTTGTGTTATATCTTTTTCCTTAGTCTTTCCTGTGTTTCGATGTTTTTCCAAAATAAATATGATGATCTCTCTCTCTTGTGAGATCAATGATAAGTTTATGTAACAAAATCTTATGTTCTTAGATGCACAAAATGGGAGGAGGATTTTCTTTTCTTTTCATTGCTTTCTAAAATATTGAAGCCTTTTATCTTATGACTTAACCTTTAATATAAAAAAAAAAATGTTACGACTCACATAAAAATCTACATGTTTGTCTAATTTTATCTCGAT

mRNA sequence

CAATTTCCTTTTGTACTTAGGAATATCTGTCTTTTAAAATTTTAAATCTAAGAGAAAAGAAAAGAAAACAAGCTAAAATTTATATATATTTTATTTAGTTATAGTAGAAGGATGAAATAACAGAGGAGGGATGTGGAATAATGGAAAGGGGAAGCTCATGGGTTGGGAAGGAATATATGAAAAAAAAATACTCTGCCCTCCAATCTTCAAAAGCATGCTTTAAGAAGGGAAATACAAAGCATAGGGAGGAAGATAATATATAGAAAGAGAGGAAGGAGAAAAGAAAATAGTAAGAAAATGAAGAGGATGGATAAGAACATTGGTTTGGCCGTGGCCACGATGATGGTGATGATGCTTCTGATTGCTACTGTCGTGGAATCAGCCTCTCCTACCGAGAAGATCACGATGATCGAACTCGTCACCAACCACCATGCTGCCAGTTCTTTTCCACGCAAAATGATGAGAAATGGGAAAGGAAATGGAGTTTGTCCCATAATAGGTTGGCCTTGCAATCCTGAGTACGGCGGCTGTGGCCCTTTCTCCGACACTTGTGCTTGCTACACTGCTGGACATTGTGGAGATTTCGTTGGTTGAAGCTGCACTTTTGTGTTATATCTTTTTCCTTAGTCTTTCCTGTGTTTCGATGTTTTTCCAAAATAAATATGATGATCTCTCTCTCTTGTGAGATCAATGATAAGTTTATGTAACAAAATCTTATGTTCTTAGATGCACAAAATGGGAGGAGGATTTTCTTTTCTTTTCATTGCTTTCTAAAATATTGAAGCCTTTTATCTTATGACTTAACCTTTAATATAAAAAAAAAAATGTTACGACTCACATAAAAATCTACATGTTTGTCTAATTTTATCTCGAT

Coding sequence (CDS)

ATGAAGAGGATGGATAAGAACATTGGTTTGGCCGTGGCCACGATGATGGTGATGATGCTTCTGATTGCTACTGTCGTGGAATCAGCCTCTCCTACCGAGAAGATCACGATGATCGAACTCGTCACCAACCACCATGCTGCCAGTTCTTTTCCACGCAAAATGATGAGAAATGGGAAAGGAAATGGAGTTTGTCCCATAATAGGTTGGCCTTGCAATCCTGAGTACGGCGGCTGTGGCCCTTTCTCCGACACTTGTGCTTGCTACACTGCTGGACATTGTGGAGATTTCGTTGGTTGA

Protein sequence

MKRMDKNIGLAVATMMVMMLLIATVVESASPTEKITMIELVTNHHAASSFPRKMMRNGKGNGVCPIIGWPCNPEYGGCGPFSDTCACYTAGHCGDFVG*
Homology
BLAST of CSPI04G00350 vs. ExPASy TrEMBL
Match: A0A0A0KWE4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000820 PE=4 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 6.5e-48
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0

Query: 1  MKRMDKNIGLAVATMMVMMLLIATVVESASPTEKITMIELVTNHHAASSFPRKMMRNGKG 60
          MKRMDKNIGLAVATMMVMMLLIATVVESASPTEKITMIELVTNHHAASSFPRKMMRNGKG
Sbjct: 1  MKRMDKNIGLAVATMMVMMLLIATVVESASPTEKITMIELVTNHHAASSFPRKMMRNGKG 60

Query: 61 NGVCPIIGWPCNPEYGGCGPFSDTCACYTAGHCGDFVG 99
          NGVCPIIG PCNPEYGGCGPFSDTCACYTAGHCGDFVG
Sbjct: 61 NGVCPIIGRPCNPEYGGCGPFSDTCACYTAGHCGDFVG 98

BLAST of CSPI04G00350 vs. ExPASy TrEMBL
Match: A0A5D3E0N0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00620 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 4.6e-38
Identity = 84/98 (85.71%), Postives = 89/98 (90.82%), Query Frame = 0

Query: 1  MKRMDKNIGLAVATMMVMMLLIATVVESASPTEKITMIELVTNHHAASSFPRKMMRNGKG 60
          MK M++NIG A ATMMVMMLLIATVVESASPTEK  MI+LVT+HHAA SFPRKMMRNGKG
Sbjct: 1  MKSMNRNIG-AAATMMVMMLLIATVVESASPTEK--MIKLVTDHHAAGSFPRKMMRNGKG 60

Query: 61 NGVCPIIGWPCNPEYGGCGPFSDTCACYTAGHCGDFVG 99
          NGVCPI GWPCNP Y GCGPFSD+CACYTAGHCGDFVG
Sbjct: 61 NGVCPITGWPCNPAY-GCGPFSDSCACYTAGHCGDFVG 94

BLAST of CSPI04G00350 vs. ExPASy TrEMBL
Match: A0A5D3E254 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00610 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 8.5e-32
Identity = 77/96 (80.21%), Postives = 84/96 (87.50%), Query Frame = 0

Query: 4  MDKNIGLAVATMMVMMLLIATVVES-ASPTEKITMIELVTNHHAASSFPRKMMRNGKGNG 63
          M+KN+G A ATMMVMMLLIATVVES ASPTEK  MIELVT+HHAASSFPRKMMRNGKGNG
Sbjct: 1  MNKNMG-AEATMMVMMLLIATVVESAASPTEK-AMIELVTDHHAASSFPRKMMRNGKGNG 60

Query: 64 VCPIIGWPCNPEYGGCGPFSDTCACYTAGHCGDFVG 99
          VCPI GWPC P + GCGP S  CACYT+G+CGD+VG
Sbjct: 61 VCPIRGWPCIPAF-GCGPLSGVCACYTSGYCGDYVG 93

BLAST of CSPI04G00350 vs. ExPASy TrEMBL
Match: A0A5D3E009 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00630 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.2e-07
Identity = 42/100 (42.00%), Postives = 60/100 (60.00%), Query Frame = 0

Query: 1  MKRMDKNIGLAVATMMVMML--LIATVVESASPTEKITMIELVTNHHAASSFPRK-MMRN 60
          M+    + GL+VAT++VMM+  +IAT+ +S   TE +    +V     + +FPRK +M+N
Sbjct: 1  MESKKNSTGLSVATVVVMMVVFMIATLADSTITTENVASGAVVNG--GSHAFPRKNIMKN 60

Query: 61 GKGNGVCPIIGWPCNPEYGGCGPFSDTCACYTAGHCGDFV 98
          G  NGVC + G  C   +  C      CACYTAGHCGD+V
Sbjct: 61 GDQNGVCLVKGKACK-SHKDC---PSNCACYTAGHCGDWV 94

BLAST of CSPI04G00350 vs. NCBI nr
Match: KGN52762.1 (hypothetical protein Csa_014579 [Cucumis sativus])

HSP 1 Score: 199.5 bits (506), Expect = 1.3e-47
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 0

Query: 1  MKRMDKNIGLAVATMMVMMLLIATVVESASPTEKITMIELVTNHHAASSFPRKMMRNGKG 60
          MKRMDKNIGLAVATMMVMMLLIATVVESASPTEKITMIELVTNHHAASSFPRKMMRNGKG
Sbjct: 1  MKRMDKNIGLAVATMMVMMLLIATVVESASPTEKITMIELVTNHHAASSFPRKMMRNGKG 60

Query: 61 NGVCPIIGWPCNPEYGGCGPFSDTCACYTAGHCGDFVG 99
          NGVCPIIG PCNPEYGGCGPFSDTCACYTAGHCGDFVG
Sbjct: 61 NGVCPIIGRPCNPEYGGCGPFSDTCACYTAGHCGDFVG 98

BLAST of CSPI04G00350 vs. NCBI nr
Match: KAA0044337.1 (hypothetical protein E6C27_scaffold46G00620 [Cucumis melo var. makuwa] >TYK29466.1 hypothetical protein E5676_scaffold655G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 166.8 bits (421), Expect = 9.6e-38
Identity = 84/98 (85.71%), Postives = 89/98 (90.82%), Query Frame = 0

Query: 1  MKRMDKNIGLAVATMMVMMLLIATVVESASPTEKITMIELVTNHHAASSFPRKMMRNGKG 60
          MK M++NIG A ATMMVMMLLIATVVESASPTEK  MI+LVT+HHAA SFPRKMMRNGKG
Sbjct: 1  MKSMNRNIG-AAATMMVMMLLIATVVESASPTEK--MIKLVTDHHAAGSFPRKMMRNGKG 60

Query: 61 NGVCPIIGWPCNPEYGGCGPFSDTCACYTAGHCGDFVG 99
          NGVCPI GWPCNP Y GCGPFSD+CACYTAGHCGDFVG
Sbjct: 61 NGVCPITGWPCNPAY-GCGPFSDSCACYTAGHCGDFVG 94

BLAST of CSPI04G00350 vs. NCBI nr
Match: KAA0044336.1 (hypothetical protein E6C27_scaffold46G00610 [Cucumis melo var. makuwa] >TYK29465.1 hypothetical protein E5676_scaffold655G00610 [Cucumis melo var. makuwa])

HSP 1 Score: 146.0 bits (367), Expect = 1.8e-31
Identity = 77/96 (80.21%), Postives = 84/96 (87.50%), Query Frame = 0

Query: 4  MDKNIGLAVATMMVMMLLIATVVES-ASPTEKITMIELVTNHHAASSFPRKMMRNGKGNG 63
          M+KN+G A ATMMVMMLLIATVVES ASPTEK  MIELVT+HHAASSFPRKMMRNGKGNG
Sbjct: 1  MNKNMG-AEATMMVMMLLIATVVESAASPTEK-AMIELVTDHHAASSFPRKMMRNGKGNG 60

Query: 64 VCPIIGWPCNPEYGGCGPFSDTCACYTAGHCGDFVG 99
          VCPI GWPC P + GCGP S  CACYT+G+CGD+VG
Sbjct: 61 VCPIRGWPCIPAF-GCGPLSGVCACYTSGYCGDYVG 93

BLAST of CSPI04G00350 vs. NCBI nr
Match: KAA0044338.1 (hypothetical protein E6C27_scaffold46G00630 [Cucumis melo var. makuwa] >TYK29467.1 hypothetical protein E5676_scaffold655G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 8.8e-07
Identity = 42/100 (42.00%), Postives = 60/100 (60.00%), Query Frame = 0

Query: 1  MKRMDKNIGLAVATMMVMML--LIATVVESASPTEKITMIELVTNHHAASSFPRK-MMRN 60
          M+    + GL+VAT++VMM+  +IAT+ +S   TE +    +V     + +FPRK +M+N
Sbjct: 1  MESKKNSTGLSVATVVVMMVVFMIATLADSTITTENVASGAVVNG--GSHAFPRKNIMKN 60

Query: 61 GKGNGVCPIIGWPCNPEYGGCGPFSDTCACYTAGHCGDFV 98
          G  NGVC + G  C   +  C      CACYTAGHCGD+V
Sbjct: 61 GDQNGVCLVKGKACK-SHKDC---PSNCACYTAGHCGDWV 94

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KWE46.5e-4898.98Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G000820 PE=4 SV=1[more]
A0A5D3E0N04.6e-3885.71Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3E2548.5e-3280.21Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3E0094.2e-0742.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KGN52762.11.3e-4798.98hypothetical protein Csa_014579 [Cucumis sativus][more]
KAA0044337.19.6e-3885.71hypothetical protein E6C27_scaffold46G00620 [Cucumis melo var. makuwa] >TYK29466... [more]
KAA0044336.11.8e-3180.21hypothetical protein E6C27_scaffold46G00610 [Cucumis melo var. makuwa] >TYK29465... [more]
KAA0044338.18.8e-0742.00hypothetical protein E6C27_scaffold46G00630 [Cucumis melo var. makuwa] >TYK29467... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI04G00350.2CSPI04G00350.2mRNA
CSPI04G00350.1CSPI04G00350.1mRNA