CSPI03G44380 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G44380
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionPolyamine-modulated factor 1-binding protein
LocationChr3: 38005224 .. 38007120 (+)
RNA-Seq ExpressionCSPI03G44380
SyntenyCSPI03G44380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAACTTCCGAATCAAAACCAAATGATCAGCTGATTCCCTTGCCGGAACCTGAATCGTTACCGGAATCTGAATCCCAGCTCTCAGCTCTCATTTTCGGTACGTTTCTTCGCTTCTCTATCCCTTTCTCTCTAATGCACACATTCAAAAGGCACGCAAATTAAGGCGCTAACTACTGCGCTTTCTCACAATGAAATCTGCCTGCCTGCCTGACTGACATTGTATAGCGAGGTTATTAGCTAGATTTTGTTACACCTACTGTGAAAAATCGGCATTGTTAGTCGTTTTCTACTTATGCTTATATGGTTAAAGACGTAGGAAATGCTATAACATCAAACTCTAGGTAGCTGTTCATATTTCGTCTCGATTGCATTCTTTAATGTTCAGCGTAGGTTCGATTGGAAACACCGATTAGGTTAATTTTCTTCGCTTCTGAATCTATAAATTCGTGTAGGACGAAAGCCGAAATTGATAGAGGTTGTTTATTTTAGACAATTTTTTTTTAACAAATCGGCATTGTTAACTATCTGCAGTTCTTAAAACGAGGAATTTGTATTCTTAAACTTAAGACTCTGATTTCTCCAAATGGTAGTAATTTGTTGTTAACAACACTTGAATCTCAGTATTCACGTTTTATGATTCTACCTCCATTTATATGTGTAATCCATCTCTATTTGGTAATCTTGCTTCACTTATCCGTTATCTGTGTAATTCTAGAAGGAATTTTATTAACTGTCTTGCGAGATGGTTGTACTAGGAGAAAGATCGTTCCTCTGCTAATTTATATGCTTATAAATCATAGCCGAACATCTATGAAAACTTCAGAGACTTGAAACAAGCAATCAGTACTCAAACCTAGACGTGCTTGCTTCTCTCACAAAATCATTTTTTCGTTTTTCGTTTTCTTCTTAGCATGTTGGTGTTTATCACGCCCTGATCTTTTTTGATCGGTCTGCCATTCAATTAGATAACGCTGGTTTATATTTTTACATGCGCGCAGATATATCACAACAGGCTCAAGGGGCTATGGAGAATATGCTTAGAATAATCAGGTTTGTTAATTATGAACAGTAACTCGATTTTTTTTAAAAACAAATTTTTAAGAGAAATTGCATACAAAAAAAAATATATATATATTTGCAGGAAATATTGTTAAGTGATAAGGTGTTAGCAGGGAGAGTGAAATTTACTACTTCCGAACTTAATGCTTGATAAAATTGATTTGAAAAGCATGAACTCTTCAAAATAATTCATGGAGTTAAGAAATGCAAATTGTAAGATGACATGCGGATCGCTTCTATGCCTAAATTTATAGCTTTTTGCTCTCAATAAATTCGATAAAATTTAAAAAAAAATTGTTCCAGCCAACGATGACTATTTTACGTGAGGAGCCAATTTAAAGCTATGTTCATAAAGTACTTATTTTGTCTACTTTTTTTTCTCTTCTTCACAATAGAGGGGATTAGCCCAGTCGGAAAAAATATATATACACACTTTCATATATTATCTGTTCTTTGTCACCACCAATACCATCTATATTCTCATTCCTCATCTTCTACTCCTAGAGACTTAAATTAATTCCATAAAACTTAATAATGGTACGTCTACGTCCTCAGACCAACCTCAGTCTTCTCGTTTTCAACTGTTTGCAGTGAAATTGATCAAAACGCTGTTGGAATAGTGGAAGACATAGAAAAGTGCAGGGGTTCTGCTCTTGACAGAAAGGGAGTGTTGGAGGAAGAGAAACAACAATTTCAACAAGCTGCTTACACTGTTTTAGACATGCTCAACAACGGAGGAGGGGGAATGCTGTAAGATTTTTCCCAAAATTTCTGCACTTTCTGCCAACACGTATCCCTTTAACATATTTACAGTCATTCATCTCTTGTTTTATAA

mRNA sequence

ATGGCAACTTCCGAATCAAAACCAAATGATCAGCTGATTCCCTTGCCGGAACCTGAATCGTTACCGGAATCTGAATCCCAGCTCTCAGCTCTCATTTTCGATATATCACAACAGGCTCAAGGGGCTATGGAGAATATGCTTAGAATAATCAGTGAAATTGATCAAAACGCTGTTGGAATAGTGGAAGACATAGAAAAGTGCAGGGGTTCTGCTCTTGACAGAAAGGGAGTGTTGGAGGAAGAGAAACAACAATTTCAACAAGCTGCTTACACTGTTTTAGACATGCTCAACAACGGAGGAGGGGGAATGCTTCATTCATCTCTTGTTTTATAA

Coding sequence (CDS)

ATGGCAACTTCCGAATCAAAACCAAATGATCAGCTGATTCCCTTGCCGGAACCTGAATCGTTACCGGAATCTGAATCCCAGCTCTCAGCTCTCATTTTCGATATATCACAACAGGCTCAAGGGGCTATGGAGAATATGCTTAGAATAATCAGTGAAATTGATCAAAACGCTGTTGGAATAGTGGAAGACATAGAAAAGTGCAGGGGTTCTGCTCTTGACAGAAAGGGAGTGTTGGAGGAAGAGAAACAACAATTTCAACAAGCTGCTTACACTGTTTTAGACATGCTCAACAACGGAGGAGGGGGAATGCTTCATTCATCTCTTGTTTTATAA

Protein sequence

MATSESKPNDQLIPLPEPESLPESESQLSALIFDISQQAQGAMENMLRIISEIDQNAVGIVEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGGGMLHSSLVL*
Homology
BLAST of CSPI03G44380 vs. ExPASy TrEMBL
Match: A0A0A0LJE0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881050 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.7e-49
Identity = 108/110 (98.18%), Postives = 109/110 (99.09%), Query Frame = 0

Query: 1   MATSESKPNDQLIPLPEPESLPESESQLSALIFDISQQAQGAMENMLRIISEIDQNAVGI 60
           MATSESKPNDQLIPLPE ESLPESESQLSALIFDISQQAQGAMENMLR+ISEIDQNAVGI
Sbjct: 1   MATSESKPNDQLIPLPESESLPESESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI 60

Query: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGGGMLHSSLVL 111
           VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGGGMLHSSLVL
Sbjct: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGGGMLHSSLVL 110

BLAST of CSPI03G44380 vs. ExPASy TrEMBL
Match: A0A1S3CR82 (uncharacterized protein LOC103503784 OS=Cucumis melo OX=3656 GN=LOC103503784 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 3.4e-45
Identity = 101/107 (94.39%), Postives = 102/107 (95.33%), Query Frame = 0

Query: 1   MATSESKPNDQLIPLPEPESLPESESQLSALIFDISQQAQGAMENMLRIISEIDQNAVGI 60
           MATSESKPNDQLIPLPEPESLPE ESQLSALIFDISQQAQGAMENMLR+ISEIDQNAVGI
Sbjct: 1   MATSESKPNDQLIPLPEPESLPEPESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI 60

Query: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGGGMLHSS 108
           VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNN GGG L  S
Sbjct: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRGGGTLKFS 107

BLAST of CSPI03G44380 vs. ExPASy TrEMBL
Match: A0A5A7TBQ0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007070 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 5.7e-45
Identity = 100/104 (96.15%), Postives = 101/104 (97.12%), Query Frame = 0

Query: 1   MATSESKPNDQLIPLPEPESLPESESQLSALIFDISQQAQGAMENMLRIISEIDQNAVGI 60
           MATSESKPNDQLIPLPEPESLPE ESQLSALIFDISQQAQGAMENMLR+ISEIDQNAVGI
Sbjct: 1   MATSESKPNDQLIPLPEPESLPEPESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI 60

Query: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGGGML 105
           VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNN GGG L
Sbjct: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRGGGTL 104

BLAST of CSPI03G44380 vs. ExPASy TrEMBL
Match: A0A6J1FEZ1 (uncharacterized protein LOC111443468 OS=Cucurbita moschata OX=3662 GN=LOC111443468 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 1.1e-40
Identity = 94/103 (91.26%), Postives = 98/103 (95.15%), Query Frame = 0

Query: 1   MATSESKPNDQLIPLPEPESLP--ESESQLSALIFDISQQAQGAMENMLRIISEIDQNAV 60
           MA+SESKPNDQLIPLPE ESLP  ESESQLS L+F ISQQAQGAMENMLR+ISEIDQNAV
Sbjct: 1   MASSESKPNDQLIPLPESESLPESESESQLSVLLFHISQQAQGAMENMLRMISEIDQNAV 60

Query: 61  GIVEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGG 102
           GI+EDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGG
Sbjct: 61  GILEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGG 103

BLAST of CSPI03G44380 vs. ExPASy TrEMBL
Match: A0A6J1IGC1 (uncharacterized protein LOC111476676 OS=Cucurbita maxima OX=3661 GN=LOC111476676 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 4.7e-39
Identity = 92/103 (89.32%), Postives = 96/103 (93.20%), Query Frame = 0

Query: 1   MATSESKPNDQLIPLPEPESLPESES--QLSALIFDISQQAQGAMENMLRIISEIDQNAV 60
           MA+SESKP DQLIPLPE ESL ESES  QLS L+F ISQQAQGAMENMLR+ISEIDQNAV
Sbjct: 1   MASSESKPTDQLIPLPESESLSESESETQLSVLLFHISQQAQGAMENMLRMISEIDQNAV 60

Query: 61  GIVEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGG 102
           GI+EDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGG
Sbjct: 61  GILEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGG 103

BLAST of CSPI03G44380 vs. NCBI nr
Match: XP_004136463.2 (uncharacterized protein LOC101215419 [Cucumis sativus] >KAE8651370.1 hypothetical protein Csa_001898 [Cucumis sativus])

HSP 1 Score: 194.9 bits (494), Expect = 3.7e-46
Identity = 103/107 (96.26%), Postives = 104/107 (97.20%), Query Frame = 0

Query: 1   MATSESKPNDQLIPLPEPESLPESESQLSALIFDISQQAQGAMENMLRIISEIDQNAVGI 60
           MATSESKPNDQLIPLPE ESLPESESQLSALIFDISQQAQGAMENMLR+ISEIDQNAVGI
Sbjct: 1   MATSESKPNDQLIPLPESESLPESESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI 60

Query: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGGGMLHSS 108
           VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGGGML  S
Sbjct: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGGGMLKFS 107

BLAST of CSPI03G44380 vs. NCBI nr
Match: XP_008466349.1 (PREDICTED: uncharacterized protein LOC103503784 [Cucumis melo])

HSP 1 Score: 190.7 bits (483), Expect = 7.0e-45
Identity = 101/107 (94.39%), Postives = 102/107 (95.33%), Query Frame = 0

Query: 1   MATSESKPNDQLIPLPEPESLPESESQLSALIFDISQQAQGAMENMLRIISEIDQNAVGI 60
           MATSESKPNDQLIPLPEPESLPE ESQLSALIFDISQQAQGAMENMLR+ISEIDQNAVGI
Sbjct: 1   MATSESKPNDQLIPLPEPESLPEPESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI 60

Query: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGGGMLHSS 108
           VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNN GGG L  S
Sbjct: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRGGGTLKFS 107

BLAST of CSPI03G44380 vs. NCBI nr
Match: KAA0038779.1 (uncharacterized protein E6C27_scaffold92G003330 [Cucumis melo var. makuwa] >TYK31399.1 uncharacterized protein E5676_scaffold455G007070 [Cucumis melo var. makuwa])

HSP 1 Score: 189.9 bits (481), Expect = 1.2e-44
Identity = 100/104 (96.15%), Postives = 101/104 (97.12%), Query Frame = 0

Query: 1   MATSESKPNDQLIPLPEPESLPESESQLSALIFDISQQAQGAMENMLRIISEIDQNAVGI 60
           MATSESKPNDQLIPLPEPESLPE ESQLSALIFDISQQAQGAMENMLR+ISEIDQNAVGI
Sbjct: 1   MATSESKPNDQLIPLPEPESLPEPESQLSALIFDISQQAQGAMENMLRMISEIDQNAVGI 60

Query: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGGGML 105
           VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNN GGG L
Sbjct: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNRGGGTL 104

BLAST of CSPI03G44380 vs. NCBI nr
Match: XP_022937053.1 (uncharacterized protein LOC111443468 [Cucurbita moschata])

HSP 1 Score: 175.6 bits (444), Expect = 2.3e-40
Identity = 94/103 (91.26%), Postives = 98/103 (95.15%), Query Frame = 0

Query: 1   MATSESKPNDQLIPLPEPESLP--ESESQLSALIFDISQQAQGAMENMLRIISEIDQNAV 60
           MA+SESKPNDQLIPLPE ESLP  ESESQLS L+F ISQQAQGAMENMLR+ISEIDQNAV
Sbjct: 1   MASSESKPNDQLIPLPESESLPESESESQLSVLLFHISQQAQGAMENMLRMISEIDQNAV 60

Query: 61  GIVEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGG 102
           GI+EDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGG
Sbjct: 61  GILEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGG 103

BLAST of CSPI03G44380 vs. NCBI nr
Match: KAG7024488.1 (hypothetical protein SDJN02_13304 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 174.9 bits (442), Expect = 4.0e-40
Identity = 94/105 (89.52%), Postives = 98/105 (93.33%), Query Frame = 0

Query: 1   MATSESKPNDQLIPLPEPESLP----ESESQLSALIFDISQQAQGAMENMLRIISEIDQN 60
           MA+SESKPNDQLIPLPE ESLP    ESESQLS L+F ISQQAQGAMENMLR+ISEIDQN
Sbjct: 1   MASSESKPNDQLIPLPESESLPESESESESQLSVLLFHISQQAQGAMENMLRMISEIDQN 60

Query: 61  AVGIVEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGG 102
           AVGI+EDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGG
Sbjct: 61  AVGILEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGG 105

BLAST of CSPI03G44380 vs. TAIR 10
Match: AT5G25570.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 98.2 bits (243), Expect = 4.4e-21
Identity = 52/101 (51.49%), Postives = 76/101 (75.25%), Query Frame = 0

Query: 1   MATSESKPNDQLIPLPEPESLPESESQLSALIFDISQQAQGAMENMLRIISEIDQNAVGI 60
           MA S S+ + QL+    P    +++S L++L+F++SQQ Q  MENML+++ EIDQN+VGI
Sbjct: 1   MAESPSQSDAQLVAHQSPGQ--QADSDLTSLVFEMSQQVQMGMENMLKMVYEIDQNSVGI 60

Query: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGG 102
            E+IEK +  A+++K +LEEEK QFQ+AAYT+LDML+N  G
Sbjct: 61  KEEIEKSKDFAMEKKRILEEEKDQFQKAAYTILDMLSNSRG 99

BLAST of CSPI03G44380 vs. TAIR 10
Match: AT5G25570.2 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 98.2 bits (243), Expect = 4.4e-21
Identity = 52/101 (51.49%), Postives = 76/101 (75.25%), Query Frame = 0

Query: 1   MATSESKPNDQLIPLPEPESLPESESQLSALIFDISQQAQGAMENMLRIISEIDQNAVGI 60
           MA S S+ + QL+    P    +++S L++L+F++SQQ Q  MENML+++ EIDQN+VGI
Sbjct: 1   MAESPSQSDAQLVAHQSPGQ--QADSDLTSLVFEMSQQVQMGMENMLKMVYEIDQNSVGI 60

Query: 61  VEDIEKCRGSALDRKGVLEEEKQQFQQAAYTVLDMLNNGGG 102
            E+IEK +  A+++K +LEEEK QFQ+AAYT+LDML+N  G
Sbjct: 61  KEEIEKSKDFAMEKKRILEEEKDQFQKAAYTILDMLSNSRG 99

BLAST of CSPI03G44380 vs. TAIR 10
Match: AT5G25570.3 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages. )

HSP 1 Score: 87.0 bits (214), Expect = 1.0e-17
Identity = 42/70 (60.00%), Postives = 57/70 (81.43%), Query Frame = 0

Query: 32  IFDISQQAQGAMENMLRIISEIDQNAVGIVEDIEKCRGSALDRKGVLEEEKQQFQQAAYT 91
           I ++SQQ Q  MENML+++ EIDQN+VGI E+IEK +  A+++K +LEEEK QFQ+AAYT
Sbjct: 62  IAEMSQQVQMGMENMLKMVYEIDQNSVGIKEEIEKSKDFAMEKKRILEEEKDQFQKAAYT 121

Query: 92  VLDMLNNGGG 102
           +LDML+N  G
Sbjct: 122 ILDMLSNSRG 131

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LJE01.7e-4998.18Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G881050 PE=4 SV=1[more]
A0A1S3CR823.4e-4594.39uncharacterized protein LOC103503784 OS=Cucumis melo OX=3656 GN=LOC103503784 PE=... [more]
A0A5A7TBQ05.7e-4596.15Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1FEZ11.1e-4091.26uncharacterized protein LOC111443468 OS=Cucurbita moschata OX=3662 GN=LOC1114434... [more]
A0A6J1IGC14.7e-3989.32uncharacterized protein LOC111476676 OS=Cucurbita maxima OX=3661 GN=LOC111476676... [more]
Match NameE-valueIdentityDescription
XP_004136463.23.7e-4696.26uncharacterized protein LOC101215419 [Cucumis sativus] >KAE8651370.1 hypothetica... [more]
XP_008466349.17.0e-4594.39PREDICTED: uncharacterized protein LOC103503784 [Cucumis melo][more]
KAA0038779.11.2e-4496.15uncharacterized protein E6C27_scaffold92G003330 [Cucumis melo var. makuwa] >TYK3... [more]
XP_022937053.12.3e-4091.26uncharacterized protein LOC111443468 [Cucurbita moschata][more]
KAG7024488.14.0e-4089.52hypothetical protein SDJN02_13304 [Cucurbita argyrosperma subsp. argyrosperma][more]
Match NameE-valueIdentityDescription
AT5G25570.14.4e-2151.49unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... [more]
AT5G25570.24.4e-2151.49unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ... [more]
AT5G25570.31.0e-1760.00unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availablePANTHERPTHR36800POLYAMINE-MODULATED FACTOR 1-BINDING PROTEINcoord: 1..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G44380.1CSPI03G44380.1mRNA