CSPI03G43570 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G43570
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	HTH La-type RNA-binding domain-containing protein
Location	Chr3: 37428287 .. 37432097 (-)
RNA-Seq Expression	CSPI03G43570
Synteny	CSPI03G43570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCCGGAGGATGTTCCCTTGGCTGTACCTCCACCTCCCCCACCACCTCCCCCACCCCCCCTTCCTGTTTTTCAAGTTTCTCCAAATAGTTATTGTAATATGATACCAGCAATTCCTGATCCTTCTTCAGGAGAACCACTGTTCAGGAGCCCTAATTGGGATCCGCGGGCTGTTGCAGGCTTTGTGCCTCAATTAAATTTTGGTACTGATCACCGAAACTTCTTTCCTAGGGGGAATTTTCCCCTCCATCCTCGTGGTGATAGTCACTACCATAACAATCGTGGGGGAAAACGTGGTCAAGATCGTGGAATATATTTTAATGCTCGAGATGCTCATTTTCAGCAGCACAGGCCTCATACTAGAGGCTTTATGAGGCCTTTGCCACCTTTCACTGGTCAGTTTCCCCAGGGTGTTAGACCTCACCTGAATCCCATGGCTCATCCAGGTGGGTGTCTCTCTAGGGACTAAAGATGATAGTAGCTGTATATTATCTAAATATGATCTTAATTTTCATCCTTATTTTGATCAGAGTTTGTCTACGTCCCTACATTGCCCTTGGAGGCGTACAGAGGTGGCCTGCCTTTCATGCCACGACCTGCAATGAACTATCCTACTGTAGATCCCACTCTGTCTGCATCAATAGTTAAGCAGATTGAATATTATTTCAGGTAATATGGTTCACTATATGAAGGAACCACTTGGTTCTTGGTTCTTTCTTTCTTCATTAGATTACTGAATATAACTGTGCTTTCCTGTCAATGCTATTTGCAGTGATGGTAATTTGGTAAAAGATGATTATTTAAGGTCCCAGATGGACGATCAAGGCTGGGTGCCAATTTCTCTGATAGCTACCTTCCCTATGGTAAGTTCTTGATGGTATTCTGCTGTTCTTTATGAGATTAAAGAATCTTAAATTTATAAGATGTAAATTTTATTCATTAACAAAATAACTTATTATAAGGGTAAGAGTTTATTTTTGTAATGTATATTTAATATTTAAAGATGTGTGTATGGATATTTTTTTGGTTAAGAAACAATGTAAAATGAGATGAAAATAGTTGTGATCTAAGATCAAGGAAGCTTATCAATAGGAACCATAGTTATTTCTAACAAATCATTATTGGCATTAATTTGGATTCCTTAACAATAATTCTGGAGTTTGCTTGTTAATTTATCAGATAATGTGTTCTTTGTCATTTAGTATATAGTAATTCCCTTTTGTACGTAACTTTTTACTGTATCAGAAACAAAAGGAAGAAAAAAAGGTTCCTTAAATGAGTTATGTTAAGTGCGGCTACAGTTGTATAATTTTAGAAGAAAAATCTCTTTTAGCCATTGTGTGATAATATCAGATGTTGCATGATATTGATTCAAGCTTCTCATAGAAAAACTAGTTTTACTGTGTGGTTTTAACGAATTTCAATTTTATGAATGAAAAAATTGGTTAGTCTTGTAAGAAACAACTCTTTCTTATATCAATGTTAATTAAATTGTAAGCTTATGGTTAAATTTATGAAGCACCTAGGTTTGCCAAAATTGTTGTTGCTTAAGTCTTAAAAGACTTAGAGAATTCCAGTTAGGGATTCGTTAAGATCATTTTTTCAAATGATCTGATTTTAAAGTTACCTGCAGGCAGTGTGGAAGGATTAAAGACAGAATGGTTAATATTTTTCTATATTTTGTTTGATTTGATCAATTGGTGATCTCTTGACCGAATGGAGAGTATAATTGAATTTACCAAACACCCAAGTTAGCCATACTTGTTTAAGAATCAATTTTATTGGTTCAAAGACACCAAACTAAGGATAATTTGAACTTTGAAGCCACCTGTCAGGAAAATGTGATTTCAAGGTGATAAACCTGCACAGCTTGAAGGAAGGTGGTAGTGTTAATTTTCCCCCCTTTTTAGATTATGCTAGAGTGAGATACTTGAAAGTCATTATTGTGATCATTCCAGTAACTATTTTTGTTCTCCATACTTGTAATCCTCTTTCTAGAGTGTGCTGACTAGAATAAGGCTATTGATTTATACCTGCACATTTATGTGCTTATACATGCAATCTGTGGTCTTTAATGGCCAAATGATTTCAATATCCCATTAGGGATATGGATTACATCATGAGATTTCATTTTTTTTCATATATTTAGTTTACCTTCTCTACCTTTGTCGTTTCTATTGGTTTATATTCTTTATCACTCTGTATCAGAAATGAGAGTTCAGCTTCATTGAGTAGTTAAACTTGTTCTTGTCAACAACAAGACAATTTAAAAGAAAGATAACATTTTGGTTAGAGTGGTGTGGAAAATTTGGGTTCTTGATCTTGTTTTTTGTGAAACCAGGGAGCACAAAGAGCGGTGCTACTGAAATCTTGTCATTGATTCATCGTGGTCATATCTTTTCTTCTCACTACAATCAATTCTTGAGCATAGCCGTACATGAGTTTCTTGTATCTTCAGAAAAATGGCTTCATTCTAACATTTAGTGTCGTTTGCAAATTCAAATTTTTTCCCTCATCAAGTGTGTGTTATATATCATTTGTTGTTTCAGCTTAAATTAATTTTGAATGTTTATTTTCATCTTACAGTTTGTTCAACTTAAACAATAGCTTGTTCAAATGACTTGTTATTAAGAAAATAATTATAGGCATTTGGGTAATCGGTGGAGTTTTTAAGTCAGAAGAATTGTTTAGTCATATGACCCACAGTGTATGGAGTTCATAACTTATGGAATTAATGGTTTTTAGACAGTGGGTTAAGGAACTCTTTGGGCCAAACATGCCCTCAAATGTTTGCTTGATACAGCAGTTCAGTGGACTATTTAGAATGAATTGAAAATACTATTGTGCTTGATTGCTGCATTTATAACTTTGTTTTTGCAGGTACTGAGTCTGACAAACAATATTCAATGGATAGTAGAATCCTTGAGAACGTCTACTGAAGTGGAAGTTCAGGTTAGTTTCATACTCTCTCTTTGTTCGTTGTCTGATGACCAATCCAATCTTGAGGTCATTTGCATTGTTTGGTTCTGAATTTACTTGTGTGTGTGTATATATGTATCTAGCTAGCGTTCTGAAAAGCAGCTAATGGGTTGAGTTTTACTCTAGTGGTTTAATTATTCTGCTAAAATTGTTGCAGGATTATAAGATCAGACGGAGAAATGAGTGGAAGAAATGGACAACTAAATCCAATTGGTTTAGAACTGATTTGGTCTCTTCTGCTTCAAGTGGATCAACTCATGATAGTCTAGCAACTTCTTTTCAAAGGGTCAGAGTGGATGAAGGTACGAACCAAAGTATGACCAATGATACTGATCCTCATAACGCCGAGCGTACTACTGAGTTACAATCTTCCGAGTCAGGTGATTGTTCACAACTTACTAATGGTGAGGCGAATCAGGATGTTCAGACTGATATCTGATCAATTTTGTTCTCCCAAAGGTTCGAGCGCTTACTTTTTGGGATAATACATGTCTATGTCTACTTACAAGAGGGTCTGGCTGCTAACTCTCTCTCTTCCTCCATGTGTCATGCCATTTCTTGTCATGCTCATTTTGGCAGTTCAAAGAGGCTAGTTTTTGGGGATACGAAGAATATTTTATTTATTATTCCAAATATAAAAAGAGGAGAAGTTTAGTTTTGGTATACTTGTAGTTGGAAGTACATTCTTAATGTTTCTCTTATGCTTTATGGATGATTTTAGTGACTGAAGTATATAACATTCATTGAACACTATTCTGAATCATCAATGACCATTTTTTTAAAAAGGAAATGTGCCTTTGAATTTTAGTGGCTGATCTTTCCTTTGGTAT

mRNA sequence

ATGGAGCCGGAGGATGTTCCCTTGGCTGTACCTCCACCTCCCCCACCACCTCCCCCACCCCCCCTTCCTGTTTTTCAAGTTTCTCCAAATAGTTATTGTAATATGATACCAGCAATTCCTGATCCTTCTTCAGGAGAACCACTGTTCAGGAGCCCTAATTGGGATCCGCGGGCTGTTGCAGGCTTTGTGCCTCAATTAAATTTTGGTACTGATCACCGAAACTTCTTTCCTAGGGGGAATTTTCCCCTCCATCCTCGTGGTGATAGTCACTACCATAACAATCGTGGGGGAAAACGTGGTCAAGATCGTGGAATATATTTTAATGCTCGAGATGCTCATTTTCAGCAGCACAGGCCTCATACTAGAGGCTTTATGAGGCCTTTGCCACCTTTCACTGGTCAGTTTCCCCAGGGTGTTAGACCTCACCTGAATCCCATGGCTCATCCAGAGTTTGTCTACGTCCCTACATTGCCCTTGGAGGCGTACAGAGGTGGCCTGCCTTTCATGCCACGACCTGCAATGAACTATCCTACTGTAGATCCCACTCTGTCTGCATCAATAGTTAAGCAGATTGAATATTATTTCAGTGATGGTAATTTGGTAAAAGATGATTATTTAAGGTCCCAGATGGACGATCAAGGCTGGGTGCCAATTTCTCTGATAGCTACCTTCCCTATGGTACTGAGTCTGACAAACAATATTCAATGGATAGTAGAATCCTTGAGAACGTCTACTGAAGTGGAAGTTCAGGATTATAAGATCAGACGGAGAAATGAGTGGAAGAAATGGACAACTAAATCCAATTGGTTTAGAACTGATTTGGTCTCTTCTGCTTCAAGTGGATCAACTCATGATAGTCTAGCAACTTCTTTTCAAAGGGTCAGAGTGGATGAAGGTACGAACCAAAGTATGACCAATGATACTGATCCTCATAACGCCGAGCGTACTACTGAGTTACAATCTTCCGAGTCAGGTGATTGTTCACAACTTACTAATGGTGAGGCGAATCAGGATGTTCAGACTGATATCTGATCAATTTTGTTCTCCCAAAGGTTCGAGCGCTTACTTTTTGGGATAATACATGTCTATGTCTACTTACAAGAGGGTCTGGCTGCTAACTCTCTCTCTTCCTCCATGTGTCATGCCATTTCTTGTCATGCTCATTTTGGCAGTTCAAAGAGGCTAGTTTTTGGGGATACGAAGAATATTTTATTTATTATTCCAAATATAAAAAGAGGAGAAGTTTAGTTTTGGTATACTTGTAGTTGGAAGTACATTCTTAATGTTTCTCTTATGCTTTATGGATGATTTTAGTGACTGAAGTATATAACATTCATTGAACACTATTCTGAATCATCAATGACCATTTTTTTAAAAAGGAAATGTGCCTTTGAATTTTAGTGGCTGATCTTTCCTTTGGTAT

Coding sequence (CDS)

ATGGAGCCGGAGGATGTTCCCTTGGCTGTACCTCCACCTCCCCCACCACCTCCCCCACCCCCCCTTCCTGTTTTTCAAGTTTCTCCAAATAGTTATTGTAATATGATACCAGCAATTCCTGATCCTTCTTCAGGAGAACCACTGTTCAGGAGCCCTAATTGGGATCCGCGGGCTGTTGCAGGCTTTGTGCCTCAATTAAATTTTGGTACTGATCACCGAAACTTCTTTCCTAGGGGGAATTTTCCCCTCCATCCTCGTGGTGATAGTCACTACCATAACAATCGTGGGGGAAAACGTGGTCAAGATCGTGGAATATATTTTAATGCTCGAGATGCTCATTTTCAGCAGCACAGGCCTCATACTAGAGGCTTTATGAGGCCTTTGCCACCTTTCACTGGTCAGTTTCCCCAGGGTGTTAGACCTCACCTGAATCCCATGGCTCATCCAGAGTTTGTCTACGTCCCTACATTGCCCTTGGAGGCGTACAGAGGTGGCCTGCCTTTCATGCCACGACCTGCAATGAACTATCCTACTGTAGATCCCACTCTGTCTGCATCAATAGTTAAGCAGATTGAATATTATTTCAGTGATGGTAATTTGGTAAAAGATGATTATTTAAGGTCCCAGATGGACGATCAAGGCTGGGTGCCAATTTCTCTGATAGCTACCTTCCCTATGGTACTGAGTCTGACAAACAATATTCAATGGATAGTAGAATCCTTGAGAACGTCTACTGAAGTGGAAGTTCAGGATTATAAGATCAGACGGAGAAATGAGTGGAAGAAATGGACAACTAAATCCAATTGGTTTAGAACTGATTTGGTCTCTTCTGCTTCAAGTGGATCAACTCATGATAGTCTAGCAACTTCTTTTCAAAGGGTCAGAGTGGATGAAGGTACGAACCAAAGTATGACCAATGATACTGATCCTCATAACGCCGAGCGTACTACTGAGTTACAATCTTCCGAGTCAGGTGATTGTTCACAACTTACTAATGGTGAGGCGAATCAGGATGTTCAGACTGATATCTGA

Protein sequence

MEPEDVPLAVPPPPPPPPPPPLPVFQVSPNSYCNMIPAIPDPSSGEPLFRSPNWDPRAVAGFVPQLNFGTDHRNFFPRGNFPLHPRGDSHYHNNRGGKRGQDRGIYFNARDAHFQQHRPHTRGFMRPLPPFTGQFPQGVRPHLNPMAHPEFVYVPTLPLEAYRGGLPFMPRPAMNYPTVDPTLSASIVKQIEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLSLTNNIQWIVESLRTSTEVEVQDYKIRRRNEWKKWTTKSNWFRTDLVSSASSGSTHDSLATSFQRVRVDEGTNQSMTNDTDPHNAERTTELQSSESGDCSQLTNGEANQDVQTDI*

Homology

[Close]

BLAST of CSPI03G43570 vs. ExPASy Swiss-Prot
Match: Q8RWR2 (La-related protein 1B OS=Arabidopsis thaliana OX=3702 GN=LARP1B PE=1 SV=2)

HSP 1 Score: 103.6 bits (257), Expect = 4.5e-21
Identity = 82/257 (31.91%), Postives = 131/257 (50.97%), Query Frame = 0


Query: 67  NFGT-DHRNFFPRGNFPLHPRGDS-HYHNNRGGKRGQDRGI---YFNARDAHFQQHRPHT 126
           +FG+ + RN     N   +PRG+  H+ N R  + G   G     ++ RD H Q  R   
Sbjct: 203 SFGSGNFRNSQRNRNSSSYPRGEGLHHGNRRNYEHGNQSGFSHRNYSGRDMHLQPQR--G 262

Query: 127 RGFMRP--------LPPFTGQF---PQGVRPHLNPMAHPEF---VYVPTLPLEAYRGGLP 186
            G +RP         P  + Q+   PQ +  +  P+ +P++   V++P  P     G + 
Sbjct: 263 VGMIRPQMLMGPPSFPASSAQYMAAPQ-LGSYGGPIIYPDYAQHVFMPH-PSPDPMGLVG 322

Query: 187 FMPRPAMNYPTVDPTLSASIVKQIEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMV 246
             P   M +   D  L   I+ Q+EYYFS  NL +D++LR QM+D+GWVP+ +IA F  +
Sbjct: 323 PFPLQPMYFRNFDAILYNKILTQVEYYFSADNLSRDEHLRDQMNDEGWVPVRVIAAFRRL 382

Query: 247 LSLTNNIQWIVESLRTSTEVEVQDYKIRRRNEWKKWTTKSNWFRTDLVSSASSGSTHDSL 305
             LTNNIQ I+E+LR+S  VE+Q   +RRR +W K+       R+     A+  S + SL
Sbjct: 383 AELTNNIQTILEALRSSEVVEIQGETLRRRGDWDKYLLPREPSRS---GPAAGASNNASL 442

[Close]

BLAST of CSPI03G43570 vs. ExPASy Swiss-Prot
Match: Q94K80 (La-related protein 1C OS=Arabidopsis thaliana OX=3702 GN=LARP1C PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 7.8e-21
Identity = 82/256 (32.03%), Postives = 123/256 (48.05%), Query Frame = 0


Query: 88  DSHYHNNRGGKRGQDRGIY-------FNARDAHFQQHRPHTRGFMRPLPPFTGQFPQGVR 147
           + ++H + GG+R Q+ G         FN R+ + Q  R  T  F+R   P     PQ   
Sbjct: 267 NGNHHQSHGGRRNQEHGNQNWTFQRSFNGREGNAQSQR-GTPAFVRHPSPTVQPIPQ--- 326

Query: 148 PHLNPMAHPEFVYVPT-LPLEAYRGGLPFMP----RPAMNYPTVDPTLSASIVKQIEYYF 207
             +     P  +  PT L   +Y   +P+M      P   Y   DP L   + KQI+YYF
Sbjct: 327 -FMAAQPFPSHIPFPTELAQSSYYPRMPYMTPIPHGPQFFYHYQDPPLHMKLHKQIQYYF 386

Query: 208 SDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLSLTNNIQWIVESLRTSTEVEVQDYKIR 267
           SD NL+ D YLR  M+++G+VP+ ++A F  V  LT+NIQ IVE+L+ S  VEVQ   IR
Sbjct: 387 SDENLITDIYLRGFMNNEGFVPLRVVAGFKKVAELTDNIQQIVEALQNSPHVEVQGDFIR 446

Query: 268 RRNEWKKWTTKSNWFRTDLVSSASSGSTHDSLATSFQRVRVDEGTNQSM---TNDTDPHN 327
           +R+ W+ W  +    R    S   S    D++A     + VD+ +   +   ++   P  
Sbjct: 447 KRDNWQNWVLR----RNPTGSGPQSVDRADAVAKRLGNLSVDQSSADPIGGSSSQLQPTE 506

Query: 328 AERTTELQSSESGDCS 329
           A    + QSS +   S
Sbjct: 507 ALSDDQQQSSSTAPVS 513

[Close]

BLAST of CSPI03G43570 vs. ExPASy Swiss-Prot
Match: Q659C4 (La-related protein 1B OS=Homo sapiens OX=9606 GN=LARP1B PE=1 SV=2)

HSP 1 Score: 89.7 bits (221), Expect = 6.8e-17
Identity = 63/171 (36.84%), Postives = 86/171 (50.29%), Query Frame = 0


Query: 93  NNRGGKRGQDRGIYFNARDAHFQQHRPHTRGFMRPLPPFTGQFPQGVRPHLNPMAHPEFV 152
           N RG  RG+ RG             R   RG  R  P     +  G + H      P   
Sbjct: 143 NIRGSFRGRGRG-------------RGRGRGRGRGNPRLNFDYSYGYQEHGERTDQPFQT 202

Query: 153 YVPTLPLEAYRGGLPFMPRPAMNYPTVDPTLSASIVKQIEYYFSDGNLVKDDYLRSQMDD 212
            + T  +  Y  G          YP  +  L   I +QIEYYFS  NL +D +LR +MD+
Sbjct: 203 ELNTSMMYYYDDG-----TGVQVYPVEEALLKEYIKRQIEYYFSVENLERDFFLRGKMDE 262

Query: 213 QGWVPISLIATFPMVLSLTNNIQWIVESLRTSTEVEVQDYKIRRRNEWKKW 264
           QG++PISLIA F  V +LT N+  I+E+L+ STEVE+ D K+R++ E +KW
Sbjct: 263 QGFLPISLIAGFQRVQALTTNLNLILEALKDSTEVEIVDEKMRKKIEPEKW 295

[Close]

BLAST of CSPI03G43570 vs. ExPASy Swiss-Prot
Match: D5MCN2 (La-related protein 1 OS=Caenorhabditis elegans OX=6239 GN=larp-1 PE=4 SV=2)

HSP 1 Score: 77.0 bits (188), Expect = 4.6e-13
Identity = 70/229 (30.57%), Postives = 103/229 (44.98%), Query Frame = 0


Query: 115 QQHRPHTRGFMRPLPPFTGQFPQGVRPHL--NPMAHPEFVYVPTLPLEAYRGGLPFMP-- 174
           QQH      F  P+P  +        PHL   P+     V  P    E     +PF P  
Sbjct: 514 QQHMASFAPFRPPMPMLS--------PHLMSPPLDRDGGVTSPVSNGEPINTAIPFAPIY 573

Query: 175 -RPAMNYPTVDPTLSASIVKQIEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLS 234
             P    P  D TL   + KQIEYYFS+ NL KD +LR +M  +G++P++LIA+FP V S
Sbjct: 574 NPPTAPRPVTDDTLKEYVRKQIEYYFSEENLQKDFFLRRKMGPEGYLPVALIASFPRVRS 633

Query: 235 LTNNIQWIVESLRTSTEVEVQDYKIRRRNEWKKWTTKSNWFRTDLVSSASSGSTHDSLAT 294
           LT +   I+E+L+ ST+V++    ++ R         + W     VS A S     S A 
Sbjct: 634 LTEDYSLILEALKDSTKVDMSPDGLQIRAP----VNPTIWPLMPTVSGADSLPGPSSQAP 693

Query: 295 SFQRVRVDEGT-----NQSMTNDTDPHNAERTTELQSSESGDCSQLTNG 334
              R      T     +Q   + + P   E   E+++ +     +LT+G
Sbjct: 694 QQFRQNGPAATAAPVESQPQASSSKPQQPEEWEEVKTRKGKGKGRLTSG 730

[Close]

BLAST of CSPI03G43570 vs. ExPASy Swiss-Prot
Match: Q940X9 (La-related protein 1A OS=Arabidopsis thaliana OX=3702 GN=LARP1A PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.3e-12
Identity = 105/353 (29.75%), Postives = 143/353 (40.51%), Query Frame = 0


Query: 11  PPPPP------PPPPPPLPVFQVSPNSYCNMIPAIPDPSSGEPLFRSPNWDPRAVAGFVP 70
           PPPPP      P  PPP P             P +P P +  P F    + P  V   VP
Sbjct: 121 PPPPPYLVHAVPYHPPPFP-------------PMVPLPHAAGPDFPYAPYPPYPVP--VP 180

Query: 71  QLNFGTDHRNFFPRGNFPL--HPRGDSHYHNNRGGKRGQDRGIYFNARDAHFQQHRPHTR 130
            +    + +        P+   P+GD       G      RG      D          R
Sbjct: 181 PVTESGNEKQVQASPLPPVLPAPQGDP------GKPWPHQRGF-----DPRNMPQGAGPR 240

Query: 131 GFMRPLPPFTGQFPQGVRPHLNPMAHPEFVYVPTLPLEAYRGGLP--FMPRPAMNYPTV- 190
            F R  PPF G  P G      P       Y+P  P  A RG  P  F P P    P + 
Sbjct: 241 NFGR--PPFMGPAP-GFLVGPGPGFPGPVYYLPGPPPGAIRGPYPPRFAPYPVNQGPPIL 300

Query: 191 ---DPTLSASIVKQIEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLSLTNNIQW 250
                 L   ++KQ+EYYFSD NL  D YL S MD++GWVP  +IA F  V ++T ++ +
Sbjct: 301 SPEKLDLRDRVLKQVEYYFSDENLENDHYLISLMDEEGWVPTKIIAGFKRVKAMTMDVDF 360

Query: 251 IVESLRTSTEVEVQDYKIRRRNEWKKW---TTKSNWFRT------DLVSSASSGSTHDSL 310
           IV +L  S  VEVQ  +IR+R++W  W   + KS    T      D   S +SG    + 
Sbjct: 361 IVYALGFSNSVEVQGDQIRKRDKWSDWIPASKKSTSAETIGDGDKDSPKSITSGDNFGNP 420

Query: 311 ATSFQRVRV----DEGTNQSMTNDTDPHNAERTTELQSSESGDCSQLTNGEAN 337
           +    +  V     EG   S TN+    N + + +    E  +   L+N  +N
Sbjct: 421 SKGSSKPTVSDFSSEGAQSSRTNNYKSGNLKSSAD----EKRNVEDLSNDFSN 440

[Close]

BLAST of CSPI03G43570 vs. ExPASy TrEMBL
Match: A0A0A0LH68 (HTH La-type RNA-binding domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G873810 PE=4 SV=1)

HSP 1 Score: 681.0 bits (1756), Expect = 2.5e-192
Identity = 332/333 (99.70%), Postives = 332/333 (99.70%), Query Frame = 0


Query: 11  PPPPPPPPPPPLPVFQVSPNSYCNMIPAIPDPSSGEPLFRSPNWDPRAVAGFVPQLNFGT 70
           PPPPPPPPPPP PVFQVSPNSYCNMIPAIPDPSSGEPLFRSPNWDPRAVAGFVPQLNFGT
Sbjct: 208 PPPPPPPPPPPFPVFQVSPNSYCNMIPAIPDPSSGEPLFRSPNWDPRAVAGFVPQLNFGT 267

Query: 71  DHRNFFPRGNFPLHPRGDSHYHNNRGGKRGQDRGIYFNARDAHFQQHRPHTRGFMRPLPP 130
           DHRNFFPRGNFPLHPRGDSHYHNNRGGKRGQDRGIYFNARDAHFQQHRPHTRGFMRPLPP
Sbjct: 268 DHRNFFPRGNFPLHPRGDSHYHNNRGGKRGQDRGIYFNARDAHFQQHRPHTRGFMRPLPP 327

Query: 131 FTGQFPQGVRPHLNPMAHPEFVYVPTLPLEAYRGGLPFMPRPAMNYPTVDPTLSASIVKQ 190
           FTGQFPQGVRPHLNPMAHPEFVYVPTLPLEAYRGGLPFMPRPAMNYPTVDPTLSASIVKQ
Sbjct: 328 FTGQFPQGVRPHLNPMAHPEFVYVPTLPLEAYRGGLPFMPRPAMNYPTVDPTLSASIVKQ 387

Query: 191 IEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLSLTNNIQWIVESLRTSTEVEVQ 250
           IEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLSLTNNIQWIVESLRTSTEVEVQ
Sbjct: 388 IEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLSLTNNIQWIVESLRTSTEVEVQ 447

Query: 251 DYKIRRRNEWKKWTTKSNWFRTDLVSSASSGSTHDSLATSFQRVRVDEGTNQSMTNDTDP 310
           DYKIRRRNEWKKWTTKSNWFRTDLVSSASSGSTHDSLATSFQRVRVDEGTNQSMTNDTDP
Sbjct: 448 DYKIRRRNEWKKWTTKSNWFRTDLVSSASSGSTHDSLATSFQRVRVDEGTNQSMTNDTDP 507

Query: 311 HNAERTTELQSSESGDCSQLTNGEANQDVQTDI 344
           HNAERTTELQSSESGDCSQLTNGEANQDVQTDI
Sbjct: 508 HNAERTTELQSSESGDCSQLTNGEANQDVQTDI 540

[Close]

BLAST of CSPI03G43570 vs. ExPASy TrEMBL
Match: A0A5A7VA44 (La-related protein 1C-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold205G001300 PE=4 SV=1)

HSP 1 Score: 630.9 bits (1626), Expect = 3.0e-177
Identity = 309/335 (92.24%), Postives = 318/335 (94.93%), Query Frame = 0


Query: 11  PPPPPPPPPPPLPVFQVSPNSYCNMIPAIPDPSSGEPLFRS--PNWDPRAVAGFVPQLNF 70
           PPPPPPPPPPP P+FQV PNSYCNMIPAIPDPSSGEP FRS  PNWDPRAVAGFVPQLNF
Sbjct: 212 PPPPPPPPPPPFPLFQVPPNSYCNMIPAIPDPSSGEPPFRSLNPNWDPRAVAGFVPQLNF 271

Query: 71  GTDHRNFFPRGNFPLHPRGDSHYHNNRGGKRGQDRGIYFNARDAHFQQHRPHTRGFMRPL 130
           GTDHRNFFPRG+   HPR D HYHNNRGGKRGQDRGIY NARDAHFQQHRPHTRGFMRPL
Sbjct: 272 GTDHRNFFPRGHLAFHPRVDGHYHNNRGGKRGQDRGIYPNARDAHFQQHRPHTRGFMRPL 331

Query: 131 PPFTGQFPQGVRPHLNPMAHPEFVYVPTLPLEAYRGGLPFMPRPAMNYPTVDPTLSASIV 190
           PPF GQFPQGVRPH+NPMAHPEFVYVPTLPLEAYRG +PFMPRPAMNYPTVDP LSASI+
Sbjct: 332 PPFAGQFPQGVRPHVNPMAHPEFVYVPTLPLEAYRGSMPFMPRPAMNYPTVDPILSASIL 391

Query: 191 KQIEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLSLTNNIQWIVESLRTSTEVE 250
           KQIEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLSLTNNIQWI+ESLR STEVE
Sbjct: 392 KQIEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLSLTNNIQWIIESLRASTEVE 451

Query: 251 VQDYKIRRRNEWKKWTTKSNWFRTDLVSSASSGSTHDSLATSFQRVRVDEGTNQSMTNDT 310
           VQD KIRRRNEWKKWTTKSNWFRTDLVSSA+SGS+HDSLATSFQRVRVDEGTNQSMTND 
Sbjct: 452 VQDNKIRRRNEWKKWTTKSNWFRTDLVSSATSGSSHDSLATSFQRVRVDEGTNQSMTNDN 511

Query: 311 DPHNAERTTELQSSESGDCSQLTNGEANQDVQTDI 344
           DPHNAERTTELQSSESGDCS+LTNGEANQDVQTDI
Sbjct: 512 DPHNAERTTELQSSESGDCSKLTNGEANQDVQTDI 546

[Close]

BLAST of CSPI03G43570 vs. ExPASy TrEMBL
Match: A0A5D3E7C8 (La-related protein 1C-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G007870 PE=4 SV=1)

HSP 1 Score: 630.9 bits (1626), Expect = 3.0e-177
Identity = 309/335 (92.24%), Postives = 318/335 (94.93%), Query Frame = 0


Query: 11  PPPPPPPPPPPLPVFQVSPNSYCNMIPAIPDPSSGEPLFRS--PNWDPRAVAGFVPQLNF 70
           PPPPPPPPPPP P+FQV PNSYCNMIPAIPDPSSGEP FRS  PNWDPRAVAGFVPQLNF
Sbjct: 213 PPPPPPPPPPPFPLFQVPPNSYCNMIPAIPDPSSGEPPFRSLNPNWDPRAVAGFVPQLNF 272

Query: 71  GTDHRNFFPRGNFPLHPRGDSHYHNNRGGKRGQDRGIYFNARDAHFQQHRPHTRGFMRPL 130
           GTDHRNFFPRG+   HPR D HYHNNRGGKRGQDRGIY NARDAHFQQHRPHTRGFMRPL
Sbjct: 273 GTDHRNFFPRGHLAFHPRVDGHYHNNRGGKRGQDRGIYPNARDAHFQQHRPHTRGFMRPL 332

Query: 131 PPFTGQFPQGVRPHLNPMAHPEFVYVPTLPLEAYRGGLPFMPRPAMNYPTVDPTLSASIV 190
           PPF GQFPQGVRPH+NPMAHPEFVYVPTLPLEAYRG +PFMPRPAMNYPTVDP LSASI+
Sbjct: 333 PPFAGQFPQGVRPHVNPMAHPEFVYVPTLPLEAYRGSMPFMPRPAMNYPTVDPILSASIL 392

Query: 191 KQIEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLSLTNNIQWIVESLRTSTEVE 250
           KQIEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLSLTNNIQWI+ESLR STEVE
Sbjct: 393 KQIEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLSLTNNIQWIIESLRASTEVE 452

Query: 251 VQDYKIRRRNEWKKWTTKSNWFRTDLVSSASSGSTHDSLATSFQRVRVDEGTNQSMTNDT 310
           VQD KIRRRNEWKKWTTKSNWFRTDLVSSA+SGS+HDSLATSFQRVRVDEGTNQSMTND 
Sbjct: 453 VQDNKIRRRNEWKKWTTKSNWFRTDLVSSATSGSSHDSLATSFQRVRVDEGTNQSMTNDN 512

Query: 311 DPHNAERTTELQSSESGDCSQLTNGEANQDVQTDI 344
           DPHNAERTTELQSSESGDCS+LTNGEANQDVQTDI
Sbjct: 513 DPHNAERTTELQSSESGDCSKLTNGEANQDVQTDI 547

[Close]

BLAST of CSPI03G43570 vs. ExPASy TrEMBL
Match: A0A1S3CRB5 (la-related protein 1C-like OS=Cucumis melo OX=3656 GN=LOC103503862 PE=4 SV=1)

HSP 1 Score: 630.9 bits (1626), Expect = 3.0e-177
Identity = 309/335 (92.24%), Postives = 318/335 (94.93%), Query Frame = 0


Query: 11  PPPPPPPPPPPLPVFQVSPNSYCNMIPAIPDPSSGEPLFRS--PNWDPRAVAGFVPQLNF 70
           PPPPPPPPPPP P+FQV PNSYCNMIPAIPDPSSGEP FRS  PNWDPRAVAGFVPQLNF
Sbjct: 213 PPPPPPPPPPPFPLFQVPPNSYCNMIPAIPDPSSGEPPFRSLNPNWDPRAVAGFVPQLNF 272

Query: 71  GTDHRNFFPRGNFPLHPRGDSHYHNNRGGKRGQDRGIYFNARDAHFQQHRPHTRGFMRPL 130
           GTDHRNFFPRG+   HPR D HYHNNRGGKRGQDRGIY NARDAHFQQHRPHTRGFMRPL
Sbjct: 273 GTDHRNFFPRGHLAFHPRVDGHYHNNRGGKRGQDRGIYPNARDAHFQQHRPHTRGFMRPL 332

Query: 131 PPFTGQFPQGVRPHLNPMAHPEFVYVPTLPLEAYRGGLPFMPRPAMNYPTVDPTLSASIV 190
           PPF GQFPQGVRPH+NPMAHPEFVYVPTLPLEAYRG +PFMPRPAMNYPTVDP LSASI+
Sbjct: 333 PPFAGQFPQGVRPHVNPMAHPEFVYVPTLPLEAYRGSMPFMPRPAMNYPTVDPILSASIL 392

Query: 191 KQIEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLSLTNNIQWIVESLRTSTEVE 250
           KQIEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLSLTNNIQWI+ESLR STEVE
Sbjct: 393 KQIEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLSLTNNIQWIIESLRASTEVE 452

Query: 251 VQDYKIRRRNEWKKWTTKSNWFRTDLVSSASSGSTHDSLATSFQRVRVDEGTNQSMTNDT 310
           VQD KIRRRNEWKKWTTKSNWFRTDLVSSA+SGS+HDSLATSFQRVRVDEGTNQSMTND 
Sbjct: 453 VQDNKIRRRNEWKKWTTKSNWFRTDLVSSATSGSSHDSLATSFQRVRVDEGTNQSMTNDN 512

Query: 311 DPHNAERTTELQSSESGDCSQLTNGEANQDVQTDI 344
           DPHNAERTTELQSSESGDCS+LTNGEANQDVQTDI
Sbjct: 513 DPHNAERTTELQSSESGDCSKLTNGEANQDVQTDI 547

[Close]

BLAST of CSPI03G43570 vs. ExPASy TrEMBL
Match: A0A6J1BZT7 (la-related protein 1C-like OS=Momordica charantia OX=3673 GN=LOC111006200 PE=4 SV=1)

HSP 1 Score: 469.9 bits (1208), Expect = 8.9e-129
Identity = 241/332 (72.59%), Postives = 267/332 (80.42%), Query Frame = 0


Query: 15  PPPPPPPLPVFQVSPNSYCNMIPAIPDPSSGEPLFRSPNWDPRAVAGFVPQLNFGTDHRN 74
           PPPPPPP PVF +  +SYCN++PAIPDPS GEPLF S NWDPRAVAGFVPQ NF TDHRN
Sbjct: 211 PPPPPPPFPVFHIPASSYCNLLPAIPDPSPGEPLFGSNNWDPRAVAGFVPQTNFTTDHRN 270

Query: 75  FFPRGNFPLHPRGDSHYHNNRGGKRGQD-RGIYFNARDAHFQQHR-PHTRGFMRPLPPFT 134
           FFPRGNF  HPRGD HYHNNRGGKR QD R IY NARD HFQQHR    RGFMRP P +T
Sbjct: 271 FFPRGNFTYHPRGDGHYHNNRGGKRDQDRRRIYSNARDVHFQQHRAAPIRGFMRPSPAYT 330

Query: 135 GQFPQGVRPHLNPMAHPEFVYVPTLPLEAYRGGLPFMPRPAMNYPTVDPTLSASIVKQIE 194
            QFPQ VRPH NPM  PEFVYVPTLPLE YR G+PFMPRP M +  VDP+LSASIV+QIE
Sbjct: 331 SQFPQPVRPHANPMPPPEFVYVPTLPLEPYR-GIPFMPRPVMYHSAVDPSLSASIVQQIE 390

Query: 195 YYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLSLTNNIQWIVESLRTSTEVEVQDY 254
           YYFSD NL+ D +LRS MDDQGWVPISLIA FP V  LTNNIQ +VESLRTST VE+QD 
Sbjct: 391 YYFSDDNLITDTFLRSWMDDQGWVPISLIAAFPRVKKLTNNIQIVVESLRTSTFVEMQDN 450

Query: 255 KIRRRNEWKKWTTKSNWFRTDLVSSASSGSTHDSLATSFQRVRVDEGTNQSMTNDTDP-H 314
           +IRRRN WK++ T  NW RTDL SS+ SGS +D+LATSFQR+RVDE TNQS+T+D+DP H
Sbjct: 451 RIRRRNGWKRFATNPNWLRTDLSSSSPSGSIYDNLATSFQRIRVDECTNQSITSDSDPSH 510

Query: 315 NAERTTELQSSESGDCSQLTNGEANQDVQTDI 344
           N    TE++S E  D S+L NGE NQDVQTDI
Sbjct: 511 NTGSATEIRSFEPADSSELINGEVNQDVQTDI 541

[Close]

BLAST of CSPI03G43570 vs. NCBI nr
Match: XP_004136486.1 (la-related protein 1C [Cucumis sativus] >KGN60052.1 hypothetical protein Csa_002496 [Cucumis sativus])

HSP 1 Score: 681.0 bits (1756), Expect = 5.3e-192
Identity = 332/333 (99.70%), Postives = 332/333 (99.70%), Query Frame = 0


Query: 11  PPPPPPPPPPPLPVFQVSPNSYCNMIPAIPDPSSGEPLFRSPNWDPRAVAGFVPQLNFGT 70
           PPPPPPPPPPP PVFQVSPNSYCNMIPAIPDPSSGEPLFRSPNWDPRAVAGFVPQLNFGT
Sbjct: 208 PPPPPPPPPPPFPVFQVSPNSYCNMIPAIPDPSSGEPLFRSPNWDPRAVAGFVPQLNFGT 267

Query: 71  DHRNFFPRGNFPLHPRGDSHYHNNRGGKRGQDRGIYFNARDAHFQQHRPHTRGFMRPLPP 130
           DHRNFFPRGNFPLHPRGDSHYHNNRGGKRGQDRGIYFNARDAHFQQHRPHTRGFMRPLPP
Sbjct: 268 DHRNFFPRGNFPLHPRGDSHYHNNRGGKRGQDRGIYFNARDAHFQQHRPHTRGFMRPLPP 327

Query: 131 FTGQFPQGVRPHLNPMAHPEFVYVPTLPLEAYRGGLPFMPRPAMNYPTVDPTLSASIVKQ 190
           FTGQFPQGVRPHLNPMAHPEFVYVPTLPLEAYRGGLPFMPRPAMNYPTVDPTLSASIVKQ
Sbjct: 328 FTGQFPQGVRPHLNPMAHPEFVYVPTLPLEAYRGGLPFMPRPAMNYPTVDPTLSASIVKQ 387

Query: 191 IEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLSLTNNIQWIVESLRTSTEVEVQ 250
           IEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLSLTNNIQWIVESLRTSTEVEVQ
Sbjct: 388 IEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLSLTNNIQWIVESLRTSTEVEVQ 447

Query: 251 DYKIRRRNEWKKWTTKSNWFRTDLVSSASSGSTHDSLATSFQRVRVDEGTNQSMTNDTDP 310
           DYKIRRRNEWKKWTTKSNWFRTDLVSSASSGSTHDSLATSFQRVRVDEGTNQSMTNDTDP
Sbjct: 448 DYKIRRRNEWKKWTTKSNWFRTDLVSSASSGSTHDSLATSFQRVRVDEGTNQSMTNDTDP 507

Query: 311 HNAERTTELQSSESGDCSQLTNGEANQDVQTDI 344
           HNAERTTELQSSESGDCSQLTNGEANQDVQTDI
Sbjct: 508 HNAERTTELQSSESGDCSQLTNGEANQDVQTDI 540

[Close]

BLAST of CSPI03G43570 vs. NCBI nr
Match: KAA0063306.1 (la-related protein 1C-like [Cucumis melo var. makuwa])

HSP 1 Score: 630.9 bits (1626), Expect = 6.2e-177
Identity = 309/335 (92.24%), Postives = 318/335 (94.93%), Query Frame = 0


Query: 11  PPPPPPPPPPPLPVFQVSPNSYCNMIPAIPDPSSGEPLFRS--PNWDPRAVAGFVPQLNF 70
           PPPPPPPPPPP P+FQV PNSYCNMIPAIPDPSSGEP FRS  PNWDPRAVAGFVPQLNF
Sbjct: 212 PPPPPPPPPPPFPLFQVPPNSYCNMIPAIPDPSSGEPPFRSLNPNWDPRAVAGFVPQLNF 271

Query: 71  GTDHRNFFPRGNFPLHPRGDSHYHNNRGGKRGQDRGIYFNARDAHFQQHRPHTRGFMRPL 130
           GTDHRNFFPRG+   HPR D HYHNNRGGKRGQDRGIY NARDAHFQQHRPHTRGFMRPL
Sbjct: 272 GTDHRNFFPRGHLAFHPRVDGHYHNNRGGKRGQDRGIYPNARDAHFQQHRPHTRGFMRPL 331

Query: 131 PPFTGQFPQGVRPHLNPMAHPEFVYVPTLPLEAYRGGLPFMPRPAMNYPTVDPTLSASIV 190
           PPF GQFPQGVRPH+NPMAHPEFVYVPTLPLEAYRG +PFMPRPAMNYPTVDP LSASI+
Sbjct: 332 PPFAGQFPQGVRPHVNPMAHPEFVYVPTLPLEAYRGSMPFMPRPAMNYPTVDPILSASIL 391

Query: 191 KQIEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLSLTNNIQWIVESLRTSTEVE 250
           KQIEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLSLTNNIQWI+ESLR STEVE
Sbjct: 392 KQIEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLSLTNNIQWIIESLRASTEVE 451

Query: 251 VQDYKIRRRNEWKKWTTKSNWFRTDLVSSASSGSTHDSLATSFQRVRVDEGTNQSMTNDT 310
           VQD KIRRRNEWKKWTTKSNWFRTDLVSSA+SGS+HDSLATSFQRVRVDEGTNQSMTND 
Sbjct: 452 VQDNKIRRRNEWKKWTTKSNWFRTDLVSSATSGSSHDSLATSFQRVRVDEGTNQSMTNDN 511

Query: 311 DPHNAERTTELQSSESGDCSQLTNGEANQDVQTDI 344
           DPHNAERTTELQSSESGDCS+LTNGEANQDVQTDI
Sbjct: 512 DPHNAERTTELQSSESGDCSKLTNGEANQDVQTDI 546

[Close]

BLAST of CSPI03G43570 vs. NCBI nr
Match: XP_008466467.1 (PREDICTED: la-related protein 1C-like [Cucumis melo] >TYK31471.1 la-related protein 1C-like [Cucumis melo var. makuwa])

HSP 1 Score: 630.9 bits (1626), Expect = 6.2e-177
Identity = 309/335 (92.24%), Postives = 318/335 (94.93%), Query Frame = 0


Query: 11  PPPPPPPPPPPLPVFQVSPNSYCNMIPAIPDPSSGEPLFRS--PNWDPRAVAGFVPQLNF 70
           PPPPPPPPPPP P+FQV PNSYCNMIPAIPDPSSGEP FRS  PNWDPRAVAGFVPQLNF
Sbjct: 213 PPPPPPPPPPPFPLFQVPPNSYCNMIPAIPDPSSGEPPFRSLNPNWDPRAVAGFVPQLNF 272

Query: 71  GTDHRNFFPRGNFPLHPRGDSHYHNNRGGKRGQDRGIYFNARDAHFQQHRPHTRGFMRPL 130
           GTDHRNFFPRG+   HPR D HYHNNRGGKRGQDRGIY NARDAHFQQHRPHTRGFMRPL
Sbjct: 273 GTDHRNFFPRGHLAFHPRVDGHYHNNRGGKRGQDRGIYPNARDAHFQQHRPHTRGFMRPL 332

Query: 131 PPFTGQFPQGVRPHLNPMAHPEFVYVPTLPLEAYRGGLPFMPRPAMNYPTVDPTLSASIV 190
           PPF GQFPQGVRPH+NPMAHPEFVYVPTLPLEAYRG +PFMPRPAMNYPTVDP LSASI+
Sbjct: 333 PPFAGQFPQGVRPHVNPMAHPEFVYVPTLPLEAYRGSMPFMPRPAMNYPTVDPILSASIL 392

Query: 191 KQIEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLSLTNNIQWIVESLRTSTEVE 250
           KQIEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLSLTNNIQWI+ESLR STEVE
Sbjct: 393 KQIEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLSLTNNIQWIIESLRASTEVE 452

Query: 251 VQDYKIRRRNEWKKWTTKSNWFRTDLVSSASSGSTHDSLATSFQRVRVDEGTNQSMTNDT 310
           VQD KIRRRNEWKKWTTKSNWFRTDLVSSA+SGS+HDSLATSFQRVRVDEGTNQSMTND 
Sbjct: 453 VQDNKIRRRNEWKKWTTKSNWFRTDLVSSATSGSSHDSLATSFQRVRVDEGTNQSMTNDN 512

Query: 311 DPHNAERTTELQSSESGDCSQLTNGEANQDVQTDI 344
           DPHNAERTTELQSSESGDCS+LTNGEANQDVQTDI
Sbjct: 513 DPHNAERTTELQSSESGDCSKLTNGEANQDVQTDI 547

[Close]

BLAST of CSPI03G43570 vs. NCBI nr
Match: XP_038897929.1 (la-related protein 1C-like isoform X1 [Benincasa hispida])

HSP 1 Score: 569.3 bits (1466), Expect = 2.2e-158
Identity = 286/337 (84.87%), Postives = 299/337 (88.72%), Query Frame = 0


Query: 7   PLAVPPPPPPPPPPPLPVFQVSPNSYCNMIPAIPDPSSGEPLFRSPNWDPRAVAGFVPQL 66
           P   PPPPPPPPPPP PVFQ+ P SYCN++PAIPDPSSGEPLF   NWDPR VAGFVPQ+
Sbjct: 210 PPPPPPPPPPPPPPPFPVFQIPPASYCNLMPAIPDPSSGEPLF--SNWDPRGVAGFVPQI 269

Query: 67  NFGTDHRNFFPRGNFPLHPRGDSHYHNNRGGKRGQDRGIYFNARDAHFQQHRPHTRGFMR 126
           NF TDHRNFFPRG   LHPRGD HYHNNRGGKRGQDRGIY NARDAHFQ HRPHTRGFMR
Sbjct: 270 NFATDHRNFFPRGTLALHPRGDGHYHNNRGGKRGQDRGIYPNARDAHFQPHRPHTRGFMR 329

Query: 127 PLPPFTGQFPQGVRPHLNPMAHPEFVYVPTLPLEAYRGGLPFMPRPAMNYPTVDPTLSAS 186
           PLPP+T QFPQ VRPH NPM  PEFVYVPTLPLE YR G+PFMPRPA NYP VDPTLSAS
Sbjct: 330 PLPPYTAQFPQAVRPHGNPMTPPEFVYVPTLPLEPYR-GMPFMPRPA-NYPAVDPTLSAS 389

Query: 187 IVKQIEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLSLTNNIQWIVESLRTSTE 246
           IVKQIEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLSLTNNIQWIVESLR STE
Sbjct: 390 IVKQIEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLSLTNNIQWIVESLRASTE 449

Query: 247 VEVQDYKIRRRNEWKKWTTKSNWFRTDLVSSASSGSTHDSLATSFQRVRVDEGTNQSMTN 306
           VEVQD KIRRRNEWKKWTTKSNW+RTDLVSS  SGS HD+LA SFQRVRVDEG NQSMT+
Sbjct: 450 VEVQDNKIRRRNEWKKWTTKSNWYRTDLVSSTPSGSGHDTLANSFQRVRVDEGMNQSMTS 509

Query: 307 DTDPHNAERTTELQSSESGDCSQLTNGEANQDVQTDI 344
           D+DPHN + TTELQSSE+G  S+LTNGE NQDVQTDI
Sbjct: 510 DSDPHNTKSTTELQSSETGARSKLTNGEVNQDVQTDI 542

[Close]

BLAST of CSPI03G43570 vs. NCBI nr
Match: XP_038897930.1 (la-related protein 1C-like isoform X2 [Benincasa hispida])

HSP 1 Score: 521.5 bits (1342), Expect = 5.3e-144
Identity = 267/337 (79.23%), Postives = 276/337 (81.90%), Query Frame = 0


Query: 7   PLAVPPPPPPPPPPPLPVFQVSPNSYCNMIPAIPDPSSGEPLFRSPNWDPRAVAGFVPQL 66
           P   PPPPPPPPPPP PVFQ+ P SYCN++PAIPDPSSGEPLF   NWDPR VAGFVPQ+
Sbjct: 210 PPPPPPPPPPPPPPPFPVFQIPPASYCNLMPAIPDPSSGEPLF--SNWDPRGVAGFVPQI 269

Query: 67  NFGTDHRNFFPRGNFPLHPRGDSHYHNNRGGKRGQDRGIYFNARDAHFQQHRPHTRGFMR 126
           NF TDHRNFFPRG   LHPRGD HYHNNRGGKRGQDRGIY NARDAHFQ HRPHTRGFMR
Sbjct: 270 NFATDHRNFFPRGTLALHPRGDGHYHNNRGGKRGQDRGIYPNARDAHFQPHRPHTRGFMR 329

Query: 127 PLPPFTGQFPQGVRPHLNPMAHPEFVYVPTLPLEAYRGGLPFMPRPAMNYPTVDPTLSAS 186
           PLPP+T QFPQ VRPH NPM  PEFVYVPTLPLE YR G+PFMPRPA NYP VDPTLSAS
Sbjct: 330 PLPPYTAQFPQAVRPHGNPMTPPEFVYVPTLPLEPYR-GMPFMPRPA-NYPAVDPTLSAS 389

Query: 187 IVKQIEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLSLTNNIQWIVESLRTSTE 246
           IVKQIEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLSLTNNIQWIVESLR STE
Sbjct: 390 IVKQIEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLSLTNNIQWIVESLRASTE 449

Query: 247 VEVQDYKIRRRNEWKKWTTKSNWFRTDLVSSASSGSTHDSLATSFQRVRVDEGTNQSMTN 306
           VEVQD KIRRRNEWKKWTTKSNW+RTDLVSS  SGS HD+LA SFQRVRVDEG       
Sbjct: 450 VEVQDNKIRRRNEWKKWTTKSNWYRTDLVSSTPSGSGHDTLANSFQRVRVDEGAR----- 509

Query: 307 DTDPHNAERTTELQSSESGDCSQLTNGEANQDVQTDI 344
                                S+LTNGE NQDVQTDI
Sbjct: 510 ---------------------SKLTNGEVNQDVQTDI 516

[Close]

BLAST of CSPI03G43570 vs. TAIR 10
Match: AT5G66100.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 103.6 bits (257), Expect = 3.2e-22
Identity = 82/257 (31.91%), Postives = 131/257 (50.97%), Query Frame = 0


Query: 67  NFGT-DHRNFFPRGNFPLHPRGDS-HYHNNRGGKRGQDRGI---YFNARDAHFQQHRPHT 126
           +FG+ + RN     N   +PRG+  H+ N R  + G   G     ++ RD H Q  R   
Sbjct: 204 SFGSGNFRNSQRNRNSSSYPRGEGLHHGNRRNYEHGNQSGFSHRNYSGRDMHLQPQR--G 263

Query: 127 RGFMRP--------LPPFTGQF---PQGVRPHLNPMAHPEF---VYVPTLPLEAYRGGLP 186
            G +RP         P  + Q+   PQ +  +  P+ +P++   V++P  P     G + 
Sbjct: 264 VGMIRPQMLMGPPSFPASSAQYMAAPQ-LGSYGGPIIYPDYAQHVFMPH-PSPDPMGLVG 323

Query: 187 FMPRPAMNYPTVDPTLSASIVKQIEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMV 246
             P   M +   D  L   I+ Q+EYYFS  NL +D++LR QM+D+GWVP+ +IA F  +
Sbjct: 324 PFPLQPMYFRNFDAILYNKILTQVEYYFSADNLSRDEHLRDQMNDEGWVPVRVIAAFRRL 383

Query: 247 LSLTNNIQWIVESLRTSTEVEVQDYKIRRRNEWKKWTTKSNWFRTDLVSSASSGSTHDSL 305
             LTNNIQ I+E+LR+S  VE+Q   +RRR +W K+       R+     A+  S + SL
Sbjct: 384 AELTNNIQTILEALRSSEVVEIQGETLRRRGDWDKYLLPREPSRS---GPAAGASNNASL 443

[Close]

BLAST of CSPI03G43570 vs. TAIR 10
Match: AT4G35890.1 (winged-helix DNA-binding transcription factor family protein )

HSP 1 Score: 102.8 bits (255), Expect = 5.5e-22
Identity = 82/256 (32.03%), Postives = 123/256 (48.05%), Query Frame = 0


Query: 88  DSHYHNNRGGKRGQDRGIY-------FNARDAHFQQHRPHTRGFMRPLPPFTGQFPQGVR 147
           + ++H + GG+R Q+ G         FN R+ + Q  R  T  F+R   P     PQ   
Sbjct: 267 NGNHHQSHGGRRNQEHGNQNWTFQRSFNGREGNAQSQR-GTPAFVRHPSPTVQPIPQ--- 326

Query: 148 PHLNPMAHPEFVYVPT-LPLEAYRGGLPFMP----RPAMNYPTVDPTLSASIVKQIEYYF 207
             +     P  +  PT L   +Y   +P+M      P   Y   DP L   + KQI+YYF
Sbjct: 327 -FMAAQPFPSHIPFPTELAQSSYYPRMPYMTPIPHGPQFFYHYQDPPLHMKLHKQIQYYF 386

Query: 208 SDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLSLTNNIQWIVESLRTSTEVEVQDYKIR 267
           SD NL+ D YLR  M+++G+VP+ ++A F  V  LT+NIQ IVE+L+ S  VEVQ   IR
Sbjct: 387 SDENLITDIYLRGFMNNEGFVPLRVVAGFKKVAELTDNIQQIVEALQNSPHVEVQGDFIR 446

Query: 268 RRNEWKKWTTKSNWFRTDLVSSASSGSTHDSLATSFQRVRVDEGTNQSM---TNDTDPHN 327
           +R+ W+ W  +    R    S   S    D++A     + VD+ +   +   ++   P  
Sbjct: 447 KRDNWQNWVLR----RNPTGSGPQSVDRADAVAKRLGNLSVDQSSADPIGGSSSQLQPTE 506

Query: 328 AERTTELQSSESGDCS 329
           A    + QSS +   S
Sbjct: 507 ALSDDQQQSSSTAPVS 513

[Close]

BLAST of CSPI03G43570 vs. TAIR 10
Match: AT5G21160.1 (LA RNA-binding protein )

HSP 1 Score: 75.5 bits (184), Expect = 9.4e-14
Identity = 105/353 (29.75%), Postives = 143/353 (40.51%), Query Frame = 0


Query: 11  PPPPP------PPPPPPLPVFQVSPNSYCNMIPAIPDPSSGEPLFRSPNWDPRAVAGFVP 70
           PPPPP      P  PPP P             P +P P +  P F    + P  V   VP
Sbjct: 121 PPPPPYLVHAVPYHPPPFP-------------PMVPLPHAAGPDFPYAPYPPYPVP--VP 180

Query: 71  QLNFGTDHRNFFPRGNFPL--HPRGDSHYHNNRGGKRGQDRGIYFNARDAHFQQHRPHTR 130
            +    + +        P+   P+GD       G      RG      D          R
Sbjct: 181 PVTESGNEKQVQASPLPPVLPAPQGDP------GKPWPHQRGF-----DPRNMPQGAGPR 240

Query: 131 GFMRPLPPFTGQFPQGVRPHLNPMAHPEFVYVPTLPLEAYRGGLP--FMPRPAMNYPTV- 190
            F R  PPF G  P G      P       Y+P  P  A RG  P  F P P    P + 
Sbjct: 241 NFGR--PPFMGPAP-GFLVGPGPGFPGPVYYLPGPPPGAIRGPYPPRFAPYPVNQGPPIL 300

Query: 191 ---DPTLSASIVKQIEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLSLTNNIQW 250
                 L   ++KQ+EYYFSD NL  D YL S MD++GWVP  +IA F  V ++T ++ +
Sbjct: 301 SPEKLDLRDRVLKQVEYYFSDENLENDHYLISLMDEEGWVPTKIIAGFKRVKAMTMDVDF 360

Query: 251 IVESLRTSTEVEVQDYKIRRRNEWKKW---TTKSNWFRT------DLVSSASSGSTHDSL 310
           IV +L  S  VEVQ  +IR+R++W  W   + KS    T      D   S +SG    + 
Sbjct: 361 IVYALGFSNSVEVQGDQIRKRDKWSDWIPASKKSTSAETIGDGDKDSPKSITSGDNFGNP 420

Query: 311 ATSFQRVRV----DEGTNQSMTNDTDPHNAERTTELQSSESGDCSQLTNGEAN 337
           +    +  V     EG   S TN+    N + + +    E  +   L+N  +N
Sbjct: 421 SKGSSKPTVSDFSSEGAQSSRTNNYKSGNLKSSAD----EKRNVEDLSNDFSN 440

[Close]

BLAST of CSPI03G43570 vs. TAIR 10
Match: AT5G21160.3 (LA RNA-binding protein )

HSP 1 Score: 75.5 bits (184), Expect = 9.4e-14
Identity = 105/353 (29.75%), Postives = 143/353 (40.51%), Query Frame = 0


Query: 11  PPPPP------PPPPPPLPVFQVSPNSYCNMIPAIPDPSSGEPLFRSPNWDPRAVAGFVP 70
           PPPPP      P  PPP P             P +P P +  P F    + P  V   VP
Sbjct: 121 PPPPPYLVHAVPYHPPPFP-------------PMVPLPHAAGPDFPYAPYPPYPVP--VP 180

Query: 71  QLNFGTDHRNFFPRGNFPL--HPRGDSHYHNNRGGKRGQDRGIYFNARDAHFQQHRPHTR 130
            +    + +        P+   P+GD       G      RG      D          R
Sbjct: 181 PVTESGNEKQVQASPLPPVLPAPQGDP------GKPWPHQRGF-----DPRNMPQGAGPR 240

Query: 131 GFMRPLPPFTGQFPQGVRPHLNPMAHPEFVYVPTLPLEAYRGGLP--FMPRPAMNYPTV- 190
            F R  PPF G  P G      P       Y+P  P  A RG  P  F P P    P + 
Sbjct: 241 NFGR--PPFMGPAP-GFLVGPGPGFPGPVYYLPGPPPGAIRGPYPPRFAPYPVNQGPPIL 300

Query: 191 ---DPTLSASIVKQIEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLSLTNNIQW 250
                 L   ++KQ+EYYFSD NL  D YL S MD++GWVP  +IA F  V ++T ++ +
Sbjct: 301 SPEKLDLRDRVLKQVEYYFSDENLENDHYLISLMDEEGWVPTKIIAGFKRVKAMTMDVDF 360

Query: 251 IVESLRTSTEVEVQDYKIRRRNEWKKW---TTKSNWFRT------DLVSSASSGSTHDSL 310
           IV +L  S  VEVQ  +IR+R++W  W   + KS    T      D   S +SG    + 
Sbjct: 361 IVYALGFSNSVEVQGDQIRKRDKWSDWIPASKKSTSAETIGDGDKDSPKSITSGDNFGNP 420

Query: 311 ATSFQRVRV----DEGTNQSMTNDTDPHNAERTTELQSSESGDCSQLTNGEAN 337
           +    +  V     EG   S TN+    N + + +    E  +   L+N  +N
Sbjct: 421 SKGSSKPTVSDFSSEGAQSSRTNNYKSGNLKSSAD----EKRNVEDLSNDFSN 440

[Close]

BLAST of CSPI03G43570 vs. TAIR 10
Match: AT5G21160.2 (LA RNA-binding protein )

HSP 1 Score: 75.5 bits (184), Expect = 9.4e-14
Identity = 105/353 (29.75%), Postives = 143/353 (40.51%), Query Frame = 0


Query: 11  PPPPP------PPPPPPLPVFQVSPNSYCNMIPAIPDPSSGEPLFRSPNWDPRAVAGFVP 70
           PPPPP      P  PPP P             P +P P +  P F    + P  V   VP
Sbjct: 121 PPPPPYLVHAVPYHPPPFP-------------PMVPLPHAAGPDFPYAPYPPYPVP--VP 180

Query: 71  QLNFGTDHRNFFPRGNFPL--HPRGDSHYHNNRGGKRGQDRGIYFNARDAHFQQHRPHTR 130
            +    + +        P+   P+GD       G      RG      D          R
Sbjct: 181 PVTESGNEKQVQASPLPPVLPAPQGDP------GKPWPHQRGF-----DPRNMPQGAGPR 240

Query: 131 GFMRPLPPFTGQFPQGVRPHLNPMAHPEFVYVPTLPLEAYRGGLP--FMPRPAMNYPTV- 190
            F R  PPF G  P G      P       Y+P  P  A RG  P  F P P    P + 
Sbjct: 241 NFGR--PPFMGPAP-GFLVGPGPGFPGPVYYLPGPPPGAIRGPYPPRFAPYPVNQGPPIL 300

Query: 191 ---DPTLSASIVKQIEYYFSDGNLVKDDYLRSQMDDQGWVPISLIATFPMVLSLTNNIQW 250
                 L   ++KQ+EYYFSD NL  D YL S MD++GWVP  +IA F  V ++T ++ +
Sbjct: 301 SPEKLDLRDRVLKQVEYYFSDENLENDHYLISLMDEEGWVPTKIIAGFKRVKAMTMDVDF 360

Query: 251 IVESLRTSTEVEVQDYKIRRRNEWKKW---TTKSNWFRT------DLVSSASSGSTHDSL 310
           IV +L  S  VEVQ  +IR+R++W  W   + KS    T      D   S +SG    + 
Sbjct: 361 IVYALGFSNSVEVQGDQIRKRDKWSDWIPASKKSTSAETIGDGDKDSPKSITSGDNFGNP 420

Query: 311 ATSFQRVRV----DEGTNQSMTNDTDPHNAERTTELQSSESGDCSQLTNGEAN 337
           +    +  V     EG   S TN+    N + + +    E  +   L+N  +N
Sbjct: 421 SKGSSKPTVSDFSSEGAQSSRTNNYKSGNLKSSAD----EKRNVEDLSNDFSN 440

The following BLAST results are available for this feature:

BLAST of CSPI03G43570 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWR2	4.5e-21	31.91	La-related protein 1B OS=Arabidopsis thaliana OX=3702 GN=LARP1B PE=1 SV=2	[more]
Q94K80	7.8e-21	32.03	La-related protein 1C OS=Arabidopsis thaliana OX=3702 GN=LARP1C PE=1 SV=1	[more]
Q659C4	6.8e-17	36.84	La-related protein 1B OS=Homo sapiens OX=9606 GN=LARP1B PE=1 SV=2	[more]
D5MCN2	4.6e-13	30.57	La-related protein 1 OS=Caenorhabditis elegans OX=6239 GN=larp-1 PE=4 SV=2	[more]
Q940X9	1.3e-12	29.75	La-related protein 1A OS=Arabidopsis thaliana OX=3702 GN=LARP1A PE=1 SV=1	[more]

BLAST of CSPI03G43570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH68	2.5e-192	99.70	HTH La-type RNA-binding domain-containing protein OS=Cucumis sativus OX=3659 GN=...	[more]
A0A5A7VA44	3.0e-177	92.24	La-related protein 1C-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff...	[more]
A0A5D3E7C8	3.0e-177	92.24	La-related protein 1C-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3CRB5	3.0e-177	92.24	la-related protein 1C-like OS=Cucumis melo OX=3656 GN=LOC103503862 PE=4 SV=1	[more]
A0A6J1BZT7	8.9e-129	72.59	la-related protein 1C-like OS=Momordica charantia OX=3673 GN=LOC111006200 PE=4 S...	[more]

BLAST of CSPI03G43570 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004136486.1	5.3e-192	99.70	la-related protein 1C [Cucumis sativus] >KGN60052.1 hypothetical protein Csa_002...	[more]
KAA0063306.1	6.2e-177	92.24	la-related protein 1C-like [Cucumis melo var. makuwa]	[more]
XP_008466467.1	6.2e-177	92.24	PREDICTED: la-related protein 1C-like [Cucumis melo] >TYK31471.1 la-related prot...	[more]
XP_038897929.1	2.2e-158	84.87	la-related protein 1C-like isoform X1 [Benincasa hispida]	[more]
XP_038897930.1	5.3e-144	79.23	la-related protein 1C-like isoform X2 [Benincasa hispida]	[more]

BLAST of CSPI03G43570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G66100.1	3.2e-22	31.91	winged-helix DNA-binding transcription factor family protein	[more]
AT4G35890.1	5.5e-22	32.03	winged-helix DNA-binding transcription factor family protein	[more]
AT5G21160.1	9.4e-14	29.75	LA RNA-binding protein	[more]
AT5G21160.3	9.4e-14	29.75	LA RNA-binding protein	[more]
AT5G21160.2	9.4e-14	29.75	LA RNA-binding protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006630	La-type HTH domain	SMART	SM00715	la	coord: 181..257 e-value: 2.3E-27 score: 106.9
IPR006630	La-type HTH domain	PFAM	PF05383	La	coord: 187..242 e-value: 7.5E-23 score: 80.3
IPR006630	La-type HTH domain	PROSITE	PS50961	HTH_LA	coord: 177..266 score: 24.928089
IPR036388	Winged helix-like DNA-binding domain superfamily	GENE3D	1.10.10.10		coord: 175..267 e-value: 3.4E-30 score: 105.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 291..310
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 291..343
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 317..343
None	No IPR available	PANTHER	PTHR22792:SF132	LA-RELATED PROTEIN 1B	coord: 51..322
None	No IPR available	PANTHER	PTHR22792	LUPUS LA PROTEIN-RELATED	coord: 51..322
None	No IPR available	CDD	cd07323	LAM	coord: 187..256 e-value: 4.21288E-32 score: 113.01
IPR036390	Winged helix DNA-binding domain superfamily	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 177..265

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G43570.1	CSPI03G43570.1	mRNA
CSPI03G43570.2	CSPI03G43570.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008168	methyltransferase activity
molecular_function	GO:0003723	RNA binding