CSPI03G43230 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G43230
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	ATP synthase subunit e, mitochondrial
Location	Chr3: 37140880 .. 37142342 (+)
RNA-Seq Expression	CSPI03G43230
Synteny	CSPI03G43230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGATTTTAGCCAGAGGGGAGGTCATTTACCAAAATTACCCTCGGTTAATTTGAGTTCGATATTGGGGCACTCGCACGCACCCTCAGCCCACAGGTTGTTGGAAACTTGGAATTCATGAGGTGATTCATTCGTATCCTAACAGCGGGTCAATTGGAAAATTAGGGTTTTACGATCTACGCATACTGATTGACAGTCGAAAGAGAAGACAACTTCAAGCATTTCTCTCTTGCAACTCATAATCATCATCTACATCTAATGGCGCCCCCTCCTGGCCCTTACTCCGGCACCAGCACCCTCGCTCTGGTATTTCTTCTTTCTTTTAACTCTATATTCTAATCATCTGCGGACCTACTTTCTCTTATTTTCTTCGGAATCCAATGGATCGGTTTATTTTAGGTTTAACTTTTTTTTTCTCTCCTTTCATGTTCTAATTTTTTCTACAGGTAGCCCGTGCATCAGCTTTCTCCTTTGGTTTAGTTTACGGAAGCATTAAACTCAAGGTTCTGAAGGTAAAATTTGGAATCTAACTGCTCGTTGCTGTTATAGCAAATTCATTGAAATGGGGTTGATTGTGTGGCGCATTTGTTTAAATCAACTCCGTGTTTATTAATAATCACCATCTCGTTTCTTCATTGACATGAATTCAACATTAGAACTTGATTTCATGTCATCTGTTTCAAGGTTTTGACTTGCTTTCTTTTGGATACGAGATTTCTTCACGGCCTTATTTCCATCTATATTTACAATTTAAGGGAAAAGTCTTGTTGGAAATTTAAAGGTTCAAATCTTTTGCTATTTGATTGCGTGACATTTTTGCTGATAAGAGTTTCTTCAGCTTGCTTCAACCTCCATGCAATGTTTTTCATTTTTTAGATTAAATATGGGATAAATTTCTACCATGTAAGCACATGAAACATAGATTGGCATCGCCTTATGTACCTTGATCAGTTAATCGTATTGAATTTGAAGTTGGTTGTATACTTGTGCATTTGTCAGGCAAAGGCCAAGTCACGTGCCAAAGCTGAAGCCAAGGCCCATCACTGATGAAATCATTTATGATGTAGCTTGTAGCGATGGAGATTTCCACATAGGGAGACACTCTGATCACTTGTTGGAGAAATATGATTTTTGGCTTTAAAATTTAGTTTTTTTTTTTTTTTTTTTTTTACTGTTGAAACAAAAGAAAATTTCTTTGTTTAGACGATGTTGAGATGGTGTACGCTTAGTTTTCAGTTCCCATGGGCAGTTCTGCCTCTGAGATGGCTGTTCTTGAAATAAAGGTGACACCTGATAAATAAGACACAGTTTGAGATTCTTTTTTTGTTAAGATACTACTTTCGTTTTGCTTTGAAGTTTCAACTTATGATTTTCTCGCTGACCTCTGGTTCAGTTTATAGGTTTGTGTTCTAAGAAAGGGATATACATAAGAACCTTTGCTGTTGATGTTCACTTGTTCTCATTTT

mRNA sequence

CGATTTTAGCCAGAGGGGAGGTCATTTACCAAAATTACCCTCGGTTAATTTGAGTTCGATATTGGGGCACTCGCACGCACCCTCAGCCCACAGGTTGTTGGAAACTTGGAATTCATGAGGTGATTCATTCGTATCCTAACAGCGGGTCAATTGGAAAATTAGGGTTTTACGATCTACGCATACTGATTGACAGTCGAAAGAGAAGACAACTTCAAGCATTTCTCTCTTGCAACTCATAATCATCATCTACATCTAATGGCGCCCCCTCCTGGCCCTTACTCCGGCACCAGCACCCTCGCTCTGGTAGCCCGTGCATCAGCTTTCTCCTTTGGTTTAGTTTACGGAAGCATTAAACTCAAGGTTCTGAAGGCAAAGGCCAAGTCACGTGCCAAAGCTGAAGCCAAGGCCCATCACTGATGAAATCATTTATGATGTAGCTTGTAGCGATGGAGATTTCCACATAGGGAGACACTCTGATCACTTGTTGGAGAAATATGATTTTTGGCTTTAAAATTTAGTTTTTTTTTTTTTTTTTTTTTTACTGTTGAAACAAAAGAAAATTTCTTTGTTTAGACGATGTTGAGATGGTGTACGCTTAGTTTTCAGTTCCCATGGGCAGTTCTGCCTCTGAGATGGCTGTTCTTGAAATAAAGGTGACACCTGATAAATAAGACACAGTTTGAGATTCTTTTTTTGTTAAGATACTACTTTCGTTTTGCTTTGAAGTTTCAACTTATGATTTTCTCGCTGACCTCTGGTTCAGTTTATAGGTTTGTGTTCTAAGAAAGGGATATACATAAGAACCTTTGCTGTTGATGTTCACTTGTTCTCATTTT

Coding sequence (CDS)

ATGGCGCCCCCTCCTGGCCCTTACTCCGGCACCAGCACCCTCGCTCTGGTAGCCCGTGCATCAGCTTTCTCCTTTGGTTTAGTTTACGGAAGCATTAAACTCAAGGTTCTGAAGGCAAAGGCCAAGTCACGTGCCAAAGCTGAAGCCAAGGCCCATCACTGA

Protein sequence

MAPPPGPYSGTSTLALVARASAFSFGLVYGSIKLKVLKAKAKSRAKAEAKAHH*

Homology

[Close]

BLAST of CSPI03G43230 vs. ExPASy TrEMBL
Match: A0A0A0LH44 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G866500 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.2e-18
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFSFGLVYGSIKLKVLKAKAKSRAKAEAKAHH 54
          MAPPPGPYSGTSTLALVARASAFSFGLVYGSIKLKVLKAKAKSRAKAEAKAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFSFGLVYGSIKLKVLKAKAKSRAKAEAKAHH 53

[Close]

BLAST of CSPI03G43230 vs. ExPASy TrEMBL
Match: A0A1S3CRK7 (uncharacterized protein LOC103503894 OS=Cucumis melo OX=3656 GN=LOC103503894 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.1e-17
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFSFGLVYGSIKLKVLKAKAKSRAKAEAKAHH 54
          MAPPPGPYSGTSTLALVARASAF+FGLVYG+IKLKVLKAKAKSRAKAEAKAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKAKAKSRAKAEAKAHH 53

[Close]

BLAST of CSPI03G43230 vs. ExPASy TrEMBL
Match: A0A6J1BT37 (ATP synthase subunit e, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111005275 PE=3 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 4.2e-17
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFSFGLVYGSIKLKVLKAKAKSRAKAEAKAHH 54
          MAPPPGPYSGTSTLALVARASAF+FG+VYGSIKLKVLKAKAKS AKAEAKAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFTFGVVYGSIKLKVLKAKAKSHAKAEAKAHH 53

[Close]

BLAST of CSPI03G43230 vs. ExPASy TrEMBL
Match: A0A6P4ASX5 (ATP synthase subunit e, mitochondrial OS=Ziziphus jujuba OX=326968 GN=LOC107426588 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 9.4e-17
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFSFGLVYGSIKLKVLKAKAKSRAKAEAKAHH 54
          MAPPPGPYSGTSTLALVARASAFSFGLVYGSIKLK LKAKAKS+ KAEAKAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFSFGLVYGSIKLKYLKAKAKSQKKAEAKAHH 53

[Close]

BLAST of CSPI03G43230 vs. ExPASy TrEMBL
Match: A0A1U8B5F9 (ATP synthase subunit e, mitochondrial OS=Nelumbo nucifera OX=4432 GN=LOC104607478 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-16
Identity = 48/53 (90.57%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFSFGLVYGSIKLKVLKAKAKSRAKAEAKAHH 54
          MAPPPGPYSGTSTLALVARASAF+FG+VYGS+KLK LKAKAKSR+KAEAKAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFTFGIVYGSLKLKYLKAKAKSRSKAEAKAHH 53

[Close]

BLAST of CSPI03G43230 vs. NCBI nr
Match: XP_004147837.1 (uncharacterized protein LOC101217057 [Cucumis sativus])

HSP 1 Score: 100.5 bits (249), Expect = 4.6e-18
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFSFGLVYGSIKLKVLKAKAKSRAKAEAKAHH 54
          MAPPPGPYSGTSTLALVARASAFSFGLVYGSIKLKVLKAKAKSRAKAEAKAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFSFGLVYGSIKLKVLKAKAKSRAKAEAKAHH 53

[Close]

BLAST of CSPI03G43230 vs. NCBI nr
Match: XP_008466504.1 (PREDICTED: uncharacterized protein LOC103503894 [Cucumis melo])

HSP 1 Score: 98.2 bits (243), Expect = 2.3e-17
Identity = 51/53 (96.23%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFSFGLVYGSIKLKVLKAKAKSRAKAEAKAHH 54
          MAPPPGPYSGTSTLALVARASAF+FGLVYG+IKLKVLKAKAKSRAKAEAKAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFTFGLVYGNIKLKVLKAKAKSRAKAEAKAHH 53

[Close]

BLAST of CSPI03G43230 vs. NCBI nr
Match: XP_022132454.1 (uncharacterized protein LOC111005275 [Momordica charantia])

HSP 1 Score: 96.3 bits (238), Expect = 8.7e-17
Identity = 50/53 (94.34%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFSFGLVYGSIKLKVLKAKAKSRAKAEAKAHH 54
          MAPPPGPYSGTSTLALVARASAF+FG+VYGSIKLKVLKAKAKS AKAEAKAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFTFGVVYGSIKLKVLKAKAKSHAKAEAKAHH 53

[Close]

BLAST of CSPI03G43230 vs. NCBI nr
Match: XP_015892295.1 (uncharacterized protein LOC107426588 [Ziziphus jujuba])

HSP 1 Score: 95.1 bits (235), Expect = 1.9e-16
Identity = 50/53 (94.34%), Postives = 51/53 (96.23%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFSFGLVYGSIKLKVLKAKAKSRAKAEAKAHH 54
          MAPPPGPYSGTSTLALVARASAFSFGLVYGSIKLK LKAKAKS+ KAEAKAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFSFGLVYGSIKLKYLKAKAKSQKKAEAKAHH 53

[Close]

BLAST of CSPI03G43230 vs. NCBI nr
Match: XP_010271417.1 (PREDICTED: uncharacterized protein LOC104607478 [Nelumbo nucifera] >DAD40463.1 TPA_asm: hypothetical protein HUJ06_014786 [Nelumbo nucifera])

HSP 1 Score: 94.7 bits (234), Expect = 2.5e-16
Identity = 48/53 (90.57%), Postives = 52/53 (98.11%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFSFGLVYGSIKLKVLKAKAKSRAKAEAKAHH 54
          MAPPPGPYSGTSTLALVARASAF+FG+VYGS+KLK LKAKAKSR+KAEAKAHH
Sbjct: 1  MAPPPGPYSGTSTLALVARASAFTFGIVYGSLKLKYLKAKAKSRSKAEAKAHH 53

[Close]

BLAST of CSPI03G43230 vs. TAIR 10
Match: AT3G01130.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G15320.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 80.5 bits (197), Expect = 4.6e-16
Identity = 42/53 (79.25%), Postives = 45/53 (84.91%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFSFGLVYGSIKLKVLKAKAKSRAKAEAKAHH 54
          MAPPPG YSGTSTLALVARASAF  GL+YG+IKLK LK K  S+ KAEAKAHH
Sbjct: 1  MAPPPGLYSGTSTLALVARASAFGLGLIYGNIKLKALKIKKNSQIKAEAKAHH 53

[Close]

BLAST of CSPI03G43230 vs. TAIR 10
Match: AT5G15320.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01130.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 70.9 bits (172), Expect = 3.6e-13
Identity = 38/53 (71.70%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFSFGLVYGSIKLKVLKAKAKSRAKAEAKAHH 54
          M  PPG YSGTS+LALVARASAF  GLVYG++KLKVLK K+ S+ K EA AHH
Sbjct: 1  MTLPPGLYSGTSSLALVARASAFGLGLVYGNMKLKVLKIKSMSQKKVEATAHH 53

[Close]

BLAST of CSPI03G43230 vs. TAIR 10
Match: AT3G01130.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G15320.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 64.3 bits (155), Expect = 3.4e-11
Identity = 33/40 (82.50%), Postives = 35/40 (87.50%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFSFGLVYGSIKLKVLKAK 41
          MAPPPG YSGTSTLALVARASAF  GL+YG+IKLK LK K
Sbjct: 1  MAPPPGLYSGTSTLALVARASAFGLGLIYGNIKLKALKHK 40

[Close]

BLAST of CSPI03G43230 vs. TAIR 10
Match: AT5G15320.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01130.1); Has 64 Blast hits to 64 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 64; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 62.4 bits (150), Expect = 1.3e-10
Identity = 35/53 (66.04%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 1  MAPPPGPYSGTSTLALVARASAFSFGLVYGSIKLKVLKAKAKSRAKAEAKAHH 54
          M  PPG YSGTS+LALVARASAF  GLVYG++KLK+   K+ S+ K EA AHH
Sbjct: 1  MTLPPGLYSGTSSLALVARASAFGLGLVYGNMKLKI---KSMSQKKVEATAHH 50

The following BLAST results are available for this feature:

BLAST of CSPI03G43230 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G43230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH44	2.2e-18	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G866500 PE=4 SV=1	[more]
A0A1S3CRK7	1.1e-17	96.23	uncharacterized protein LOC103503894 OS=Cucumis melo OX=3656 GN=LOC103503894 PE=...	[more]
A0A6J1BT37	4.2e-17	94.34	ATP synthase subunit e, mitochondrial OS=Momordica charantia OX=3673 GN=LOC11100...	[more]
A0A6P4ASX5	9.4e-17	94.34	ATP synthase subunit e, mitochondrial OS=Ziziphus jujuba OX=326968 GN=LOC1074265...	[more]
A0A1U8B5F9	1.2e-16	90.57	ATP synthase subunit e, mitochondrial OS=Nelumbo nucifera OX=4432 GN=LOC10460747...	[more]

BLAST of CSPI03G43230 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004147837.1	4.6e-18	100.00	uncharacterized protein LOC101217057 [Cucumis sativus]	[more]
XP_008466504.1	2.3e-17	96.23	PREDICTED: uncharacterized protein LOC103503894 [Cucumis melo]	[more]
XP_022132454.1	8.7e-17	94.34	uncharacterized protein LOC111005275 [Momordica charantia]	[more]
XP_015892295.1	1.9e-16	94.34	uncharacterized protein LOC107426588 [Ziziphus jujuba]	[more]
XP_010271417.1	2.5e-16	90.57	PREDICTED: uncharacterized protein LOC104607478 [Nelumbo nucifera] >DAD40463.1 T...	[more]

BLAST of CSPI03G43230 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G01130.1	4.6e-16	79.25	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G15320.1	3.6e-13	71.70	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G01130.2	3.4e-11	82.50	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G15320.2	1.3e-10	66.04	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36028:SF8	SUBFAMILY NOT NAMED	coord: 1..53
None	No IPR available	PANTHER	PTHR36028	OSJNBB0050O03.8 PROTEIN	coord: 1..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G43230.1	CSPI03G43230.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
molecular_function	GO:0015078	proton transmembrane transporter activity