CSPI03G42800 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G42800
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionSPX domain-containing membrane protein
LocationChr3: 36747607 .. 36748403 (-)
RNA-Seq ExpressionCSPI03G42800
SyntenyCSPI03G42800
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACTCTAGGACCGTCAAGGAAGAAGCTATCTATCAATATATGTTCAGCCTGTTCTTCCTCTCCAGGTTTGCAGGTGTTCACTCATTTTATTGATACTTGGTTTAGTTGTTAACACTTCTCATAGTTTTCCTAACTAATCTAGCAGTACTCAAAAAGTTACTTTAACTATTTTATTTTTTCCAACTCCCATTTGCAGGACCCTGTAATCTCAATCCAATTAGAGCTGCTATGGACGGGCTAAGTAACTCAACAAAAATATTAAACTTTTTAGCACAACGTGCCCTCATTATGCAAGAAGAATTGTCTGCTCCTATTGGGGAACAAGTCAATGTTAGCAATTATCACTCCAGTGTCTCTTTTCTTGAACCTAGCAAATACATTCTTATACATGGTCAATACATATATTGTAGTCCCAACAACCGATGACTACAGCTCCATGAGCCTTGGAGCTGCAGCGACTGTATGTGGTTGATCATTTCTATCTTGGGAAATATGCATGTAGCTTATCAGTTCTATGAAATATTACACAAGCATTATGAGAAAGTGCAGGTTTGTTTCAGATAGCTTTTCTTGTTTGTAATTCAACGTGATTTGCTCGTTAGTGTTGCTACTTGTGTAAAGCCCAGGTGGTAAGTTCTGATAAATTAGCATTTTTGGATATCCCGGACACAAACCAAGTAAACCCAATTTTAAAGTAGTGAAGAAGTGTTCAACAATATTGTGAAATGGGAGAGCGCGAGAAGGAGACAAGAAAGATACGGATGGGGAAGGAGGAATTCTTTGGGAGCATATGA

mRNA sequence

ATGAACTCTAGGACCGTCAAGGAAGAAGCTATCTATCAATATATGTTCAGCCTGTTCTTCCTCTCCAGGTTTGCAGGACCCTGTAATCTCAATCCAATTAGAGCTGCTATGGACGGGCTAAGTAACTCAACAAAAATATTAAACTTTTTAGCACAACGTGCCCTCATTATGCAAGAAGAATTGTCTGCTCCTATTGGGGAACAAGTCAATCTCCATGAGCCTTGGAGCTGCAGCGACTGTATGTGGTTGATCATTTCTATCTTGGGAAATATGCATGTAGCTTATCAGTTCTATGAAATATTACACAAGCATTATGAGAAAGTGCAGGTGGTAAGTTCTGATAAATTAGCATTTTTGGATATCCCGGACACAAACCAACGCGAGAAGGAGACAAGAAAGATACGGATGGGGAAGGAGGAATTCTTTGGGAGCATATGA

Coding sequence (CDS)

ATGAACTCTAGGACCGTCAAGGAAGAAGCTATCTATCAATATATGTTCAGCCTGTTCTTCCTCTCCAGGTTTGCAGGACCCTGTAATCTCAATCCAATTAGAGCTGCTATGGACGGGCTAAGTAACTCAACAAAAATATTAAACTTTTTAGCACAACGTGCCCTCATTATGCAAGAAGAATTGTCTGCTCCTATTGGGGAACAAGTCAATCTCCATGAGCCTTGGAGCTGCAGCGACTGTATGTGGTTGATCATTTCTATCTTGGGAAATATGCATGTAGCTTATCAGTTCTATGAAATATTACACAAGCATTATGAGAAAGTGCAGGTGGTAAGTTCTGATAAATTAGCATTTTTGGATATCCCGGACACAAACCAACGCGAGAAGGAGACAAGAAAGATACGGATGGGGAAGGAGGAATTCTTTGGGAGCATATGA

Protein sequence

MNSRTVKEEAIYQYMFSLFFLSRFAGPCNLNPIRAAMDGLSNSTKILNFLAQRALIMQEELSAPIGEQVNLHEPWSCSDCMWLIISILGNMHVAYQFYEILHKHYEKVQVVSSDKLAFLDIPDTNQREKETRKIRMGKEEFFGSI*
Homology
[Close]
BLAST of CSPI03G42800 vs. ExPASy Swiss-Prot
Match: Q93ZQ5 (SPX domain-containing membrane protein At4g22990 OS=Arabidopsis thaliana OX=3702 GN=At4g22990 PE=2 SV=2)

HSP 1 Score: 45.8 bits (107), Expect = 4.8e-04
Identity = 22/39 (56.41%), Postives = 30/39 (76.92%), Query Frame = 0 

Query: 30  LNPIRAAMDGLSNSTKILNFLAQRALIMQEELSAPIGEQ 69
           ++ IRAA+D L+ ST  L+F+AQ ALIMQEEL +P  E+
Sbjct: 201 VDSIRAAVDRLTRSTNFLHFMAQHALIMQEELPSPQDEE 239

[Close]
BLAST of CSPI03G42800 vs. ExPASy TrEMBL
Match: A0A1S3ATE9 (SPX domain-containing membrane protein At4g22990-like OS=Cucumis melo OX=3656 GN=LOC103482700 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.4e-06
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 30  LNPIRAAMDGLSNSTKILNFLAQRALIMQEELSAPIGEQVN 71
           ++ IRAA+D LSNST  LNFLAQ ALIMQEEL APIGEQV+
Sbjct: 202 IDSIRAAVDRLSNSTNFLNFLAQHALIMQEELPAPIGEQVD 242

[Close]
BLAST of CSPI03G42800 vs. ExPASy TrEMBL
Match: A0A5A7THN1 (SPX domain-containing membrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44G003060 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.4e-06
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 30  LNPIRAAMDGLSNSTKILNFLAQRALIMQEELSAPIGEQVN 71
           ++ IRAA+D LSNST  LNFLAQ ALIMQEEL APIGEQV+
Sbjct: 202 IDSIRAAVDRLSNSTNFLNFLAQHALIMQEELPAPIGEQVD 242

[Close]
BLAST of CSPI03G42800 vs. ExPASy TrEMBL
Match: A0A0A0KQZ7 (SPX domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G156110 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.4e-06
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 30  LNPIRAAMDGLSNSTKILNFLAQRALIMQEELSAPIGEQVN 71
           ++ IRAA+D LSNST  LNFLAQ ALIMQEEL APIGEQV+
Sbjct: 202 IDSIRAAVDRLSNSTNFLNFLAQHALIMQEELPAPIGEQVD 242

[Close]
BLAST of CSPI03G42800 vs. ExPASy TrEMBL
Match: A0A6J1E2R5 (SPX domain-containing membrane protein At4g22990 OS=Cucurbita moschata OX=3662 GN=LOC111430297 PE=3 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 5.9e-05
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 0 

Query: 30  LNPIRAAMDGLSNSTKILNFLAQRALIMQEELSAPIGEQVN 71
           ++ I+AA+D LSNST  LNFLAQ ALIMQEEL API EQV+
Sbjct: 202 VDSIKAAVDRLSNSTNFLNFLAQHALIMQEELPAPIEEQVD 242

[Close]
BLAST of CSPI03G42800 vs. ExPASy TrEMBL
Match: A0A6J1HZ59 (SPX domain-containing membrane protein At4g22990 OS=Cucurbita maxima OX=3661 GN=LOC111468982 PE=3 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.7e-04
Identity = 28/41 (68.29%), Postives = 34/41 (82.93%), Query Frame = 0 

Query: 30  LNPIRAAMDGLSNSTKILNFLAQRALIMQEELSAPIGEQVN 71
           ++ I+AA+D LSNST  LNFLAQ ALIM+EEL API EQV+
Sbjct: 202 VDSIKAAVDRLSNSTNFLNFLAQHALIMREELPAPIEEQVD 242

[Close]
BLAST of CSPI03G42800 vs. NCBI nr
Match: XP_004143937.1 (SPX domain-containing membrane protein At4g22990 [Cucumis sativus] >KGN50151.1 hypothetical protein Csa_000455 [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 4.9e-06
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 30  LNPIRAAMDGLSNSTKILNFLAQRALIMQEELSAPIGEQVN 71
           ++ IRAA+D LSNST  LNFLAQ ALIMQEEL APIGEQV+
Sbjct: 202 IDSIRAAVDRLSNSTNFLNFLAQHALIMQEELPAPIGEQVD 242

[Close]
BLAST of CSPI03G42800 vs. NCBI nr
Match: XP_008437199.1 (PREDICTED: SPX domain-containing membrane protein At4g22990-like [Cucumis melo] >XP_008437200.1 PREDICTED: SPX domain-containing membrane protein At4g22990-like [Cucumis melo] >KAA0042803.1 SPX domain-containing membrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 4.9e-06
Identity = 31/41 (75.61%), Postives = 35/41 (85.37%), Query Frame = 0 

Query: 30  LNPIRAAMDGLSNSTKILNFLAQRALIMQEELSAPIGEQVN 71
           ++ IRAA+D LSNST  LNFLAQ ALIMQEEL APIGEQV+
Sbjct: 202 IDSIRAAVDRLSNSTNFLNFLAQHALIMQEELPAPIGEQVD 242

[Close]
BLAST of CSPI03G42800 vs. NCBI nr
Match: KAG6579473.1 (SPX domain-containing membrane protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-04
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 0 

Query: 30  LNPIRAAMDGLSNSTKILNFLAQRALIMQEELSAPIGEQVN 71
           ++ I+AA+D LSNST  LNFLAQ ALIMQEEL API EQV+
Sbjct: 270 VDSIKAAVDRLSNSTNFLNFLAQHALIMQEELPAPIEEQVD 310

[Close]
BLAST of CSPI03G42800 vs. NCBI nr
Match: XP_023550976.1 (SPX domain-containing membrane protein At4g22990 [Cucurbita pepo subsp. pepo] >XP_023550977.1 SPX domain-containing membrane protein At4g22990 [Cucurbita pepo subsp. pepo] >XP_023550978.1 SPX domain-containing membrane protein At4g22990 [Cucurbita pepo subsp. pepo] >XP_023550979.1 SPX domain-containing membrane protein At4g22990 [Cucurbita pepo subsp. pepo] >XP_023550980.1 SPX domain-containing membrane protein At4g22990 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-04
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 0 

Query: 30  LNPIRAAMDGLSNSTKILNFLAQRALIMQEELSAPIGEQVN 71
           ++ I+AA+D LSNST  LNFLAQ ALIMQEEL API EQV+
Sbjct: 202 VDSIKAAVDRLSNSTNFLNFLAQHALIMQEELPAPIEEQVD 242

[Close]
BLAST of CSPI03G42800 vs. NCBI nr
Match: XP_022922261.1 (SPX domain-containing membrane protein At4g22990 [Cucurbita moschata] >XP_022922262.1 SPX domain-containing membrane protein At4g22990 [Cucurbita moschata] >XP_022922263.1 SPX domain-containing membrane protein At4g22990 [Cucurbita moschata] >XP_022922264.1 SPX domain-containing membrane protein At4g22990 [Cucurbita moschata] >KAG7016942.1 SPX domain-containing membrane protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-04
Identity = 29/41 (70.73%), Postives = 34/41 (82.93%), Query Frame = 0 

Query: 30  LNPIRAAMDGLSNSTKILNFLAQRALIMQEELSAPIGEQVN 71
           ++ I+AA+D LSNST  LNFLAQ ALIMQEEL API EQV+
Sbjct: 202 VDSIKAAVDRLSNSTNFLNFLAQHALIMQEELPAPIEEQVD 242

[Close]
BLAST of CSPI03G42800 vs. TAIR 10
Match: AT4G22990.1 (Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein )

HSP 1 Score: 45.8 bits (107), Expect = 3.4e-05
Identity = 22/39 (56.41%), Postives = 30/39 (76.92%), Query Frame = 0 

Query: 30  LNPIRAAMDGLSNSTKILNFLAQRALIMQEELSAPIGEQ 69
           ++ IRAA+D L+ ST  L+F+AQ ALIMQEEL +P  E+
Sbjct: 201 VDSIRAAVDRLTRSTNFLHFMAQHALIMQEELPSPQDEE 239

[Close]
BLAST of CSPI03G42800 vs. TAIR 10
Match: AT4G22990.2 (Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing protein )

HSP 1 Score: 45.8 bits (107), Expect = 3.4e-05
Identity = 22/39 (56.41%), Postives = 30/39 (76.92%), Query Frame = 0 

Query: 30  LNPIRAAMDGLSNSTKILNFLAQRALIMQEELSAPIGEQ 69
           ++ IRAA+D L+ ST  L+F+AQ ALIMQEEL +P  E+
Sbjct: 201 VDSIRAAVDRLTRSTNFLHFMAQHALIMQEELPSPQDEE 239

[Close]
BLAST of CSPI03G42800 vs. TAIR 10
Match: AT5G44750.1 (DNA-directed DNA polymerases )

HSP 1 Score: 41.2 bits (95), Expect = 8.4e-04
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 0 

Query: 93  VAYQFYEILHKHYEKVQVVSSDKLAFLDIPDTNQREKE 131
           VA QFY+ILH+H  KVQ +S D+ AFLD+ D +  E E
Sbjct: 455 VADQFYDILHRHCRKVQALSCDE-AFLDVSDLSDVETE 491

[Close]
BLAST of CSPI03G42800 vs. TAIR 10
Match: AT5G44750.2 (DNA-directed DNA polymerases )

HSP 1 Score: 41.2 bits (95), Expect = 8.4e-04
Identity = 21/38 (55.26%), Postives = 27/38 (71.05%), Query Frame = 0 

Query: 93  VAYQFYEILHKHYEKVQVVSSDKLAFLDIPDTNQREKE 131
           VA QFY+ILH+H  KVQ +S D+ AFLD+ D +  E E
Sbjct: 455 VADQFYDILHRHCRKVQALSCDE-AFLDVSDLSDVETE 491

The following BLAST results are available for this feature:
BLAST of CSPI03G42800 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q93ZQ54.8e-0456.41SPX domain-containing membrane protein At4g22990 OS=Arabidopsis thaliana OX=3702... [more]
BLAST of CSPI03G42800 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3ATE92.4e-0675.61SPX domain-containing membrane protein At4g22990-like OS=Cucumis melo OX=3656 GN... [more]
A0A5A7THN12.4e-0675.61SPX domain-containing membrane protein OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A0A0KQZ72.4e-0675.61SPX domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G156110 PE=3 SV... [more]
A0A6J1E2R55.9e-0570.73SPX domain-containing membrane protein At4g22990 OS=Cucurbita moschata OX=3662 G... [more]
A0A6J1HZ591.7e-0468.29SPX domain-containing membrane protein At4g22990 OS=Cucurbita maxima OX=3661 GN=... [more]
BLAST of CSPI03G42800 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004143937.14.9e-0675.61SPX domain-containing membrane protein At4g22990 [Cucumis sativus] >KGN50151.1 h... [more]
XP_008437199.14.9e-0675.61PREDICTED: SPX domain-containing membrane protein At4g22990-like [Cucumis melo] ... [more]
KAG6579473.11.2e-0470.73SPX domain-containing membrane protein, partial [Cucurbita argyrosperma subsp. s... [more]
XP_023550976.11.2e-0470.73SPX domain-containing membrane protein At4g22990 [Cucurbita pepo subsp. pepo] >X... [more]
XP_022922261.11.2e-0470.73SPX domain-containing membrane protein At4g22990 [Cucurbita moschata] >XP_022922... [more]
BLAST of CSPI03G42800 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G22990.13.4e-0556.41Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing prote... [more]
AT4G22990.23.4e-0556.41Major Facilitator Superfamily with SPX (SYG1/Pho81/XPR1) domain-containing prote... [more]
AT5G44750.18.4e-0455.26DNA-directed DNA polymerases [more]
AT5G44750.28.4e-0455.26DNA-directed DNA polymerases [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G42800.1CSPI03G42800.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0022857 transmembrane transporter activity