CSPI03G42510 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G42510
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr3: 36524552 .. 36524800 (+)
RNA-Seq ExpressionCSPI03G42510
SyntenyCSPI03G42510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATACGAAGTGGGGGTTACGCGATTTGGTGATCGGAATGAGAGGAAGCGCTGACTTATGGTATTATTGTGTTAGTTGGAAGGGAGAAAATGGGAGAGGAGAGGAAGAAGAAGACTGGATCCATGGTTGGTTTCGTCTTCCCTTTTGCAGTTGCTTTCCTTTGGTTATTGGTTGTTTGCTTTTGTGTAAATGGAGGCTAACGTTGGACTTGGACCTCTACAAAAGTTATGAGCAGGCAGGCAGCCAT

mRNA sequence

ATGGATACGAAGTGGGGGTTACGCGATTTGGTGATCGGAATGAGAGGAAGCGCTGACTTATGGTATTATTACTGGATCCATGGTTGGTTTCGTCTTCCCTTTTGCAGTTGCTTTCCTTTGGTTATTGGTTGTTTGCTTTTGTGTAAATGGAGGCTAACGTTGGACTTGGACCTCTACAAAAGTTATGAGCAGGCAGGCAGCCAT

Coding sequence (CDS)

ATGGATACGAAGTGGGGGTTACGCGATTTGGTGATCGGAATGAGAGGAAGCGCTGACTTATGGTATTATTACTGGATCCATGGTTGGTTTCGTCTTCCCTTTTGCAGTTGCTTTCCTTTGGTTATTGGTTGTTTGCTTTTGTGTAAATGGAGGCTAACGTTGGACTTGGACCTCTACAAAAGTTATGAGCAGGCAGGCAGCCAT

Protein sequence

MDTKWGLRDLVIGMRGSADLWYYYWIHGWFRLPFCSCFPLVIGCLLLCKWRLTLDLDLYKSYEQAGSH
Homology
[Close]
BLAST of CSPI03G42510 vs. ExPASy TrEMBL
Match: A0A0A0LDT4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G855320 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.4e-22
Identity = 55/68 (80.88%), Postives = 55/68 (80.88%), Query Frame = 0 

Query: 1  MDTKWGLRDLVIGMRGSADLWYYYWIHGWFRLPFCSCFPLVIGCLLLCKWRLTLDLDLYK 60
          MDTKWGLRDLVIGMRGSADLWYY           C  FPLVIGCLLLCKWRLTLDLDLYK
Sbjct: 1  MDTKWGLRDLVIGMRGSADLWYY-----------CLRFPLVIGCLLLCKWRLTLDLDLYK 57

Query: 61 SYEQAGSH 69
          SYEQAGSH
Sbjct: 61 SYEQAGSH 57

[Close]
BLAST of CSPI03G42510 vs. NCBI nr
Match: KGN59938.1 (hypothetical protein Csa_002165 [Cucumis sativus])

HSP 1 Score: 114.8 bits (286), Expect = 3.0e-22
Identity = 55/68 (80.88%), Postives = 55/68 (80.88%), Query Frame = 0 

Query: 1  MDTKWGLRDLVIGMRGSADLWYYYWIHGWFRLPFCSCFPLVIGCLLLCKWRLTLDLDLYK 60
          MDTKWGLRDLVIGMRGSADLWYY           C  FPLVIGCLLLCKWRLTLDLDLYK
Sbjct: 1  MDTKWGLRDLVIGMRGSADLWYY-----------CLRFPLVIGCLLLCKWRLTLDLDLYK 57

Query: 61 SYEQAGSH 69
          SYEQAGSH
Sbjct: 61 SYEQAGSH 57

The following BLAST results are available for this feature:
BLAST of CSPI03G42510 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI03G42510 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LDT41.4e-2280.88Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G855320 PE=4 SV=1[more]
BLAST of CSPI03G42510 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN59938.13.0e-2280.88hypothetical protein Csa_002165 [Cucumis sativus][more]
BLAST of CSPI03G42510 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G42510.1CSPI03G42510.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane