CSPI03G42380 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G42380
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr3: 36427852 .. 36428314 (-)
RNA-Seq ExpressionCSPI03G42380
SyntenyCSPI03G42380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GATTTCTGACGGCAACACAACTCTAACCGGATGTAGGAGAGCCGATAATTTCGGCTGCTAGGGTTCCCCTGGCGGTGCCAAAAGTTACCATGGCTAGGGTTAGGATTCAAGTATACTTTTAACGATTGACGGCAGCTCACGACAGCACAATCAACGTAAACAAAACAAAACCCGAATTTTTTCGGCCATATTCAGTGGGGGCGCGATGCGGTCAGCGGCGAATGGTCGGAGATGGGCGATCGACGATGACGAAATGCGACGCCAATTGCTAAGATATGACCGGCCGACGGGTAAAGGCAAAACCCATACCATAAAACGGACCACCTGCGGGCAAAAAGTCGAGCGAAGGAGAACGATTGCTCGCCGATTGAAGATTCCGGTGAGCTCTGAGTTACTGGAGGTGGTGGCGGACGAGAGAGAGGTTCGACAGCAACACAAACTAGGGTTTTTGTTTAGTTTGTAA

mRNA sequence

GATTTCTGACGGCAACACAACTCTAACCGGATGTAGGAGAGCCGATAATTTCGGCTGCTAGGGTTCCCCTGGCGGTGCCAAAAGTTACCATGGCTAGGGTTAGGATTCAAGTATACTTTTAACGATTGACGGCAGCTCACGACAGCACAATCAACGTAAACAAAACAAAACCCGAATTTTTTCGGCCATATTCAGTGGGGGCGCGATGCGGTCAGCGGCGAATGGTCGGAGATGGGCGATCGACGATGACGAAATGCGACGCCAATTGCTAAGATATGACCGGCCGACGGGTAAAGGCAAAACCCATACCATAAAACGGACCACCTGCGGGCAAAAAGTCGAGCGAAGGAGAACGATTGCTCGCCGATTGAAGATTCCGGTGAGCTCTGAGTTACTGGAGGTGGTGGCGGACGAGAGAGAGGTTCGACAGCAACACAAACTAGGGTTTTTGTTTAGTTTGTAA

Coding sequence (CDS)

ATGCGGTCAGCGGCGAATGGTCGGAGATGGGCGATCGACGATGACGAAATGCGACGCCAATTGCTAAGATATGACCGGCCGACGGGTAAAGGCAAAACCCATACCATAAAACGGACCACCTGCGGGCAAAAAGTCGAGCGAAGGAGAACGATTGCTCGCCGATTGAAGATTCCGGTGAGCTCTGAGTTACTGGAGGTGGTGGCGGACGAGAGAGAGGTTCGACAGCAACACAAACTAGGGTTTTTGTTTAGTTTGTAA

Protein sequence

MRSAANGRRWAIDDDEMRRQLLRYDRPTGKGKTHTIKRTTCGQKVERRRTIARRLKIPVSSELLEVVADEREVRQQHKLGFLFSL*
Homology
[Close]
BLAST of CSPI03G42380 vs. ExPASy TrEMBL
Match: A0A0A0LG13 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G854200 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.2e-37
Identity = 83/85 (97.65%), Postives = 83/85 (97.65%), Query Frame = 0 

Query: 1  MRSAANGRRWAIDDDEMRRQLLRYDRPTGKGKTHTIKRTTCGQKVERRRTIARRLKIPVS 60
          MRSAANGRRWAIDDDEMRRQLL YDRPTGKGKTHTIKRTTCGQKVERRRTIA RLKIPVS
Sbjct: 1  MRSAANGRRWAIDDDEMRRQLLIYDRPTGKGKTHTIKRTTCGQKVERRRTIAHRLKIPVS 60

Query: 61 SELLEVVADEREVRQQHKLGFLFSL 86
          SELLEVVADEREVRQQHKLGFLFSL
Sbjct: 61 SELLEVVADEREVRQQHKLGFLFSL 85

[Close]
BLAST of CSPI03G42380 vs. NCBI nr
Match: KAE8651316.1 (hypothetical protein Csa_001202 [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 1.9e-29
Identity = 70/72 (97.22%), Postives = 70/72 (97.22%), Query Frame = 0 

Query: 1  MRSAANGRRWAIDDDEMRRQLLRYDRPTGKGKTHTIKRTTCGQKVERRRTIARRLKIPVS 60
          MRSAANGRRWAIDDDEMRRQLL YDRPTGKGKTHTIKRTTCGQKVERRRTIA RLKIPVS
Sbjct: 1  MRSAANGRRWAIDDDEMRRQLLIYDRPTGKGKTHTIKRTTCGQKVERRRTIAHRLKIPVS 60

Query: 61 SELLEVVADERE 73
          SELLEVVADERE
Sbjct: 61 SELLEVVADERE 72

The following BLAST results are available for this feature:
BLAST of CSPI03G42380 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI03G42380 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LG131.2e-3797.65Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G854200 PE=4 SV=1[more]
BLAST of CSPI03G42380 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8651316.11.9e-2997.22hypothetical protein Csa_001202 [Cucumis sativus][more]
BLAST of CSPI03G42380 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G42380.1CSPI03G42380.1mRNA