CSPI03G42350 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G42350
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	RING-type E3 ubiquitin transferase
Location	Chr3: 36407249 .. 36407572 (+)
RNA-Seq Expression	CSPI03G42350
Synteny	CSPI03G42350

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCACTCCCTCTTGATATACTTACAAACTGCCAGAAGAGATCAATCCCCTATTGTGGTTGGCTACAACTTGATGTCTTGGAATGAGTATACCATTTTCTGTTCTAGCAAGGTACATTGAGCTTTCAAATCTTTCTTTAACACGTTTAGATTTTCTAGTTCAATGGGCAATTTTATTTGTTGGTGAAGCAGCTGATTTCTTTTACTTCTAAAGCACTATGTTTGCCATAACTACTAAATACAATGTTATCATACTTGTTTATAGGTGGAACCACCGAAGATGAGTATCTATCGTGAAGAGGCAATGGATGTTCTTATTAACCCT

mRNA sequence

ATGCACTCCCTCTTGATATACTTACAAACTGCCAGAAGAGATCAATCCCCTATTGTGGTTGGCTACAACTTGATGTCTTGGAATGAGTATACCATTTTCTGTTCTAGCAAGGTGGAACCACCGAAGATGAGTATCTATCGTGAAGAGGCAATGGATGTTCTTATTAACCCT

Coding sequence (CDS)

ATGCACTCCCTCTTGATATACTTACAAACTGCCAGAAGAGATCAATCCCCTATTGTGGTTGGCTACAACTTGATGTCTTGGAATGAGTATACCATTTTCTGTTCTAGCAAGGTGGAACCACCGAAGATGAGTATCTATCGTGAAGAGGCAATGGATGTTCTTATTAACCCT

Protein sequence

MHSLLIYLQTARRDQSPIVVGYNLMSWNEYTIFCSSKVEPPKMSIYREEAMDVLINP

Homology

[Close]

BLAST of CSPI03G42350 vs. ExPASy TrEMBL
Match: A0A0A0M114 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_1G696500 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 6.4e-08
Identity = 36/56 (64.29%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 1   MHSLLIYLQTARRDQSPIVVGYNLMSWNEYTIFCSSKVEPPKMSIYREEAMDVLIN 57
           MHSLLIYLQTARRDQSP+V G  L             VEP KMSIYREEAMD+LI+
Sbjct: 775 MHSLLIYLQTARRDQSPVVAGLLLQ--------LDVLVEPRKMSIYREEAMDILIS 822

[Close]

BLAST of CSPI03G42350 vs. ExPASy TrEMBL
Match: A0A5D3E2B9 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3607G00080 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.4e-07
Identity = 36/56 (64.29%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 1   MHSLLIYLQTARRDQSPIVVGYNLMSWNEYTIFCSSKVEPPKMSIYREEAMDVLIN 57
           MH LLIYLQTARRDQSP+V G  L             VEP KMSIYREEAMDVLI+
Sbjct: 865 MHYLLIYLQTARRDQSPVVAGLLLQ--------LDVLVEPRKMSIYREEAMDVLIS 912

[Close]

BLAST of CSPI03G42350 vs. ExPASy TrEMBL
Match: A0A5A7V5V1 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G001100 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.4e-07
Identity = 36/56 (64.29%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 1   MHSLLIYLQTARRDQSPIVVGYNLMSWNEYTIFCSSKVEPPKMSIYREEAMDVLIN 57
           MH LLIYLQTARRDQSP+V G  L             VEP KMSIYREEAMDVLI+
Sbjct: 862 MHYLLIYLQTARRDQSPVVAGLLLQ--------LDVLVEPRKMSIYREEAMDVLIS 909

[Close]

BLAST of CSPI03G42350 vs. ExPASy TrEMBL
Match: A0A1S4E4L5 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103501061 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.4e-07
Identity = 36/56 (64.29%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 1   MHSLLIYLQTARRDQSPIVVGYNLMSWNEYTIFCSSKVEPPKMSIYREEAMDVLIN 57
           MH LLIYLQTARRDQSP+V G  L             VEP KMSIYREEAMDVLI+
Sbjct: 858 MHYLLIYLQTARRDQSPVVAGLLLQ--------LDVLVEPRKMSIYREEAMDVLIS 905

[Close]

BLAST of CSPI03G42350 vs. ExPASy TrEMBL
Match: A0A6J1L0K6 (RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111499948 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.5e-06
Identity = 34/56 (60.71%), Postives = 36/56 (64.29%), Query Frame = 0


Query: 1   MHSLLIYLQTARRDQSPIVVGYNLMSWNEYTIFCSSKVEPPKMSIYREEAMDVLIN 57
           MHSLL YLQTA RDQ P+V G  L             VEP KMSIYREEAMDVLI+
Sbjct: 769 MHSLLTYLQTAHRDQCPVVAGLLLQ--------LDILVEPLKMSIYREEAMDVLIS 816

[Close]

BLAST of CSPI03G42350 vs. NCBI nr
Match: XP_011648557.1 (putative E3 ubiquitin-protein ligase LIN-1 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 1.3e-07
Identity = 36/56 (64.29%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 1   MHSLLIYLQTARRDQSPIVVGYNLMSWNEYTIFCSSKVEPPKMSIYREEAMDVLIN 57
           MHSLLIYLQTARRDQSP+V G  L             VEP KMSIYREEAMD+LI+
Sbjct: 775 MHSLLIYLQTARRDQSPVVAGLLLQ--------LDVLVEPRKMSIYREEAMDILIS 822

[Close]

BLAST of CSPI03G42350 vs. NCBI nr
Match: KAE8653635.1 (hypothetical protein Csa_006994 [Cucumis sativus])

HSP 1 Score: 65.9 bits (159), Expect = 1.3e-07
Identity = 36/56 (64.29%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 1   MHSLLIYLQTARRDQSPIVVGYNLMSWNEYTIFCSSKVEPPKMSIYREEAMDVLIN 57
           MHSLLIYLQTARRDQSP+V G  L             VEP KMSIYREEAMD+LI+
Sbjct: 408 MHSLLIYLQTARRDQSPVVAGLLLQ--------LDVLVEPRKMSIYREEAMDILIS 455

[Close]

BLAST of CSPI03G42350 vs. NCBI nr
Match: KAA0062610.1 (putative E3 ubiquitin-protein ligase LIN-1 [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 5.0e-07
Identity = 36/56 (64.29%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 1   MHSLLIYLQTARRDQSPIVVGYNLMSWNEYTIFCSSKVEPPKMSIYREEAMDVLIN 57
           MH LLIYLQTARRDQSP+V G  L             VEP KMSIYREEAMDVLI+
Sbjct: 862 MHYLLIYLQTARRDQSPVVAGLLLQ--------LDVLVEPRKMSIYREEAMDVLIS 909

[Close]

BLAST of CSPI03G42350 vs. NCBI nr
Match: TYK29700.1 (putative E3 ubiquitin-protein ligase LIN-1 [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 5.0e-07
Identity = 36/56 (64.29%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 1   MHSLLIYLQTARRDQSPIVVGYNLMSWNEYTIFCSSKVEPPKMSIYREEAMDVLIN 57
           MH LLIYLQTARRDQSP+V G  L             VEP KMSIYREEAMDVLI+
Sbjct: 865 MHYLLIYLQTARRDQSPVVAGLLLQ--------LDVLVEPRKMSIYREEAMDVLIS 912

[Close]

BLAST of CSPI03G42350 vs. NCBI nr
Match: XP_016902915.1 (PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Cucumis melo])

HSP 1 Score: 63.9 bits (154), Expect = 5.0e-07
Identity = 36/56 (64.29%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 1   MHSLLIYLQTARRDQSPIVVGYNLMSWNEYTIFCSSKVEPPKMSIYREEAMDVLIN 57
           MH LLIYLQTARRDQSP+V G  L             VEP KMSIYREEAMDVLI+
Sbjct: 858 MHYLLIYLQTARRDQSPVVAGLLLQ--------LDVLVEPRKMSIYREEAMDVLIS 905

The following BLAST results are available for this feature:

BLAST of CSPI03G42350 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G42350 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M114	6.4e-08	64.29	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_1G696500 PE...	[more]
A0A5D3E2B9	2.4e-07	64.29	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A5A7V5V1	2.4e-07	64.29	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]
A0A1S4E4L5	2.4e-07	64.29	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103501061 PE=4 ...	[more]
A0A6J1L0K6	3.5e-06	60.71	RING-type E3 ubiquitin transferase OS=Cucurbita maxima OX=3661 GN=LOC111499948 P...	[more]

BLAST of CSPI03G42350 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011648557.1	1.3e-07	64.29	putative E3 ubiquitin-protein ligase LIN-1 [Cucumis sativus]	[more]
KAE8653635.1	1.3e-07	64.29	hypothetical protein Csa_006994 [Cucumis sativus]	[more]
KAA0062610.1	5.0e-07	64.29	putative E3 ubiquitin-protein ligase LIN-1 [Cucumis melo var. makuwa]	[more]
TYK29700.1	5.0e-07	64.29	putative E3 ubiquitin-protein ligase LIN-1 [Cucumis melo var. makuwa]	[more]
XP_016902915.1	5.0e-07	64.29	PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 [Cucumis melo]	[more]

BLAST of CSPI03G42350 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G42350.1	CSPI03G42350.1	mRNA