CSPI03G41960 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G41960
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr3: 36037775 .. 36040723 (+)
RNA-Seq Expression	CSPI03G41960
Synteny	CSPI03G41960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAGAAATGCGATAAATATCACCGACTAACCGAATAAAACCGAAGACGAGAAAGTAAAATATTGGAACCATAAAACGACGTGGTTTCTTGCAATAGCTATCCCGGAGATTTTGCCCTGCCGCCGCCGGTGAGTTCTTTAGATTTTCTTTTTCTTTAGCTTTCTTTATAGGCTCAATCCACAGTTTTCTGTTTGGTTCCCGAGAAGAGATCCTGAATTATTTTTTTTCTCGACGCAGAAAAAACTAGGTAAATATTGATTTTGAATTTTATATTTCTTGAGTTTTATTTCCAATCCTTCTCTCTCTTTTGTGATGTGGAATTGCATGTATCCATTTGAAGCCTTATCGTATCGTAATTCTCAGGAAATAGGAGATGGCTGATTTTTCAGTGAATGAACATGGAATTGGCTGTATTTAGGATTTTATTATATCATATTCTTTAATTTGGTTTACTTTTCATGTGGGGGAGCTGTTCTTGAGTTCAGTTTTTCACTAAATATATGATCGGAGAACAGTTTAGGCAGGAAATTTAAGTGAATGAAGTTGAGAAGCCTCCTATAGTTCAATATTGAGAATGATTATCTATCTGTCTGTTCATTTGTTGCCCGAACATTTTTAGTCCCAAAAGTCAAATCGTTGCATGGTATGAAGTACAAGAACGTCGTCGTTAAAGATGGTTTAGAACGAAAAGACTATATTAGAGCGAAACTTCAAGGAGCTAGGAATGAGTTTAAGTTTTTTAATTAAATGGTAGCTGTAGTACTTGTTAAGATTTTCATTTCATTATCAGATTATTAAGTGTTTACTTTTCTTGATATTGAAATTAAAGCTAAACAGTGTAGTGATTTCACTCTTGATAAGGTTTTCAATAATAAGGAGCTCAGGATGAGTTTAAGCTTCTCAATTAGATTAGAGCTGCAGTGCTTGTTAAGGTTTCCATCATCAGAGATTAAGTGTGTGGTTTTGTAGTTATTGAGATTAAAGTTAAACAGCGTTATGATTTGACTTCCATTTTGGAATTTTTTTTCTTCTGGCATTATTTGATGGGGATGATCTTGATCCAGGTGCAGCAATTGTTATTTCTGCATTTACTGTTTCTTTATTGATTGTGATATGTACATCTGTATATTAATATCAAACTATCTTTGTATGTTTTGATGGGTCGGTTTATTACAAAGGCCATTTCTAGATTATCTGGTTCATTAACGGACAATGGAAGATAAAGTCAATGTCCCAACTAAAAGAGATTGGAAACAAATGGGACATGAAGGGGCAACTGTAGCTGTTCATGAAGAAATGAAACGAGTGCAACAGTTTCCTTCTAACAGTACCTATGCTACTCATCGTTTGCGGATTTTAAACAAAATTCTGCAGCTTTTATCAATTCAGGTTTGTATCATGAAACAGAAGAAATCATTTGGTCAGTTTGTGTTAATAATTGGTGTAGTAGAAGTGGGGTAATGTGGGGTTTTTTGTTCAAATATTGAGATTAAGATTAGATTCCACAAATACGACAAGGACTTATTTTTTTAAAAAAAAATATTTAGGACATAGACATGACAAAGATACACAAGAATGTTAAAATATATATATTACTTTTATACCAGAAAGAAATTCGAAGTCGGTGAATCAAAGTTTATTATATTTTCTCGTGTGTCTATTTAGTATACTTAACTAGTGTTTGACACATTGGACCTACTTTGATTTTCTACAACTAATTTCTAGCACATCTATGACACTAACATGTCCTCAAGTGTAGGAGTATCTAAATTTCACATTCATTTTAAAGCTTGTACTGATTTGAATTCTTTGTAGTGCAGTGGTATTATTTTTTGCAATTTGTAAATAAGTACATCTTTTGTGGGGAGGGGTGTTGGTTTGGGTGAGAGGAACAATAAAACTTTTTCAAGGTTCGGGAGATCTCCGGGTGAAGTTTTGTCCTCTGTAAGATTCAATGTGTCCATATGCTTCAGTTACAAAACCCTTTTAAGTATCCGTTAGGTTTTATTTTTCTAGAAGTGGTTCTTTTTATAGTTTGCCACCCTTTTTGTTAGCTTATTTTTGTATGCCATTGTATTTTTCGTTTGTTCTCAAACTGGGTTATCCATTAAAAAAAGAAAAAGATGAGTGAAGCACAGCTTTTCATACTTTTATCTAAGTTTTCAGAGATTTAGAATTTGACTGTACAGTTGATTGTGACAAACTTGCTGGAGATTATGCTAAGTTTATGTATCACCTATTCATCTTAAGTTTCTCTTCAATGAAGAAATGGATTGCTAATGATGATCCCATTGCTATGCTATTGCTATACGTTTACTCCATATAAAGCTTCAAATTCAATTTAACGATTTTCTCTCAGTCCATTTTCAGTTCATGCAGTGCTGAATTCATCACCAAAACAATCTTAGTTTAGTTTATTCCTAAGAGTATATACACCACAATCTTAATGTGTGCTGTTGTTCTCGTGGTTGCTTGAATTGCAAAATATGATGAACATTGCTATATGATATCTGATATGATTGTGTTTGTTTGCTCGTTTTCTTTTGTCAGAGAACTCTATCTCAGGAAGAGGAACTGGAGTTGCTGTTTTCTGGGCTTTCCTTGTGATAAGTTGTAGCTAGAGAATGGCTGGTACAGTTTCACTTCTCTATACAAATACAATTACAGAATGAAAGGTGGTTAGGATTTTGTTGGTCATCCTCGGTATATCATAACCATATCGTATATGTTTCTGTATCAATATCCTTAAATGCTTATCAGATGCCCTCCTAGGGACAATATCCTTAATCCTTAAATGTTTAAGTTGCAAAATGAACAATCAATGTGATTATCCCTTTCACTTTCATCTCCCATCGATGATCATTTCATTTGCATTATTTTAATCATGCAAGCCATGTATTATTAAGGAAGTCTCAAACCATTGAATGTATGTGTTTTACTTTTTATCCAC

mRNA sequence

GTAGAAATGCGATAAATATCACCGACTAACCGAATAAAACCGAAGACGAGAAAGTAAAATATTGGAACCATAAAACGACGTGGTTTCTTGCAATAGCTATCCCGGAGATTTTGCCCTGCCGCCGCCGGCCATTTCTAGATTATCTGGTTCATTAACGGACAATGGAAGATAAAGTCAATGTCCCAACTAAAAGAGATTGGAAACAAATGGGACATGAAGGGGCAACTGTAGCTGTTCATGAAGAAATGAAACGAGTGCAACAGTTTCCTTCTAACAGTACCTATGCTACTCATCGTTTGCGGATTTTAAACAAAATTCTGCAGCTTTTATCAATTCAGAGAACTCTATCTCAGGAAGAGGAACTGGAGTTGCTGTTTTCTGGGCTTTCCTTGTGATAAGTTGTAGCTAGAGAATGGCTGGTACAGTTTCACTTCTCTATACAAATACAATTACAGAATGAAAGGTGGTTAGGATTTTGTTGGTCATCCTCGGTATATCATAACCATATCGTATATGTTTCTGTATCAATATCCTTAAATGCTTATCAGATGCCCTCCTAGGGACAATATCCTTAATCCTTAAATGTTTAAGTTGCAAAATGAACAATCAATGTGATTATCCCTTTCACTTTCATCTCCCATCGATGATCATTTCATTTGCATTATTTTAATCATGCAAGCCATGTATTATTAAGGAAGTCTCAAACCATTGAATGTATGTGTTTTACTTTTTATCCAC

Coding sequence (CDS)

ATGGAAGATAAAGTCAATGTCCCAACTAAAAGAGATTGGAAACAAATGGGACATGAAGGGGCAACTGTAGCTGTTCATGAAGAAATGAAACGAGTGCAACAGTTTCCTTCTAACAGTACCTATGCTACTCATCGTTTGCGGATTTTAAACAAAATTCTGCAGCTTTTATCAATTCAGAGAACTCTATCTCAGGAAGAGGAACTGGAGTTGCTGTTTTCTGGGCTTTCCTTGTGA

Protein sequence

MEDKVNVPTKRDWKQMGHEGATVAVHEEMKRVQQFPSNSTYATHRLRILNKILQLLSIQRTLSQEEELELLFSGLSL*

Homology

[Close]

BLAST of CSPI03G41960 vs. ExPASy TrEMBL
Match: A0A0A0LFX0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851790 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.1e-33
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MEDKVNVPTKRDWKQMGHEGATVAVHEEMKRVQQFPSNSTYATHRLRILNKILQLLSIQR 60
          MEDKVNVPTKRDWKQMGHEGATVAVHEEMKRVQQFPSNSTYATHRLRILNKILQLLSIQR
Sbjct: 1  MEDKVNVPTKRDWKQMGHEGATVAVHEEMKRVQQFPSNSTYATHRLRILNKILQLLSIQR 60

Query: 61 TLSQEEELELLFSGLSL 78
          TLSQEEELELLFSGLSL
Sbjct: 61 TLSQEEELELLFSGLSL 77

[Close]

BLAST of CSPI03G41960 vs. ExPASy TrEMBL
Match: A0A5A7SZV0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001550 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.7e-30
Identity = 71/77 (92.21%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MEDKVNVPTKRDWKQMGHEGATVAVHEEMKRVQQFPSNSTYATHRLRILNKILQLLSIQR 60
          MEDKV VP KRDWKQMGHE ATVAVHEEMKRVQ+FPSNSTYATHRLR+LNKILQLLSIQR
Sbjct: 1  MEDKVTVPPKRDWKQMGHEEATVAVHEEMKRVQKFPSNSTYATHRLRVLNKILQLLSIQR 60

Query: 61 TLSQEEELELLFSGLSL 78
          T+SQEEELELLFSGLSL
Sbjct: 61 TVSQEEELELLFSGLSL 77

[Close]

BLAST of CSPI03G41960 vs. ExPASy TrEMBL
Match: A0A6J1CCW1 (uncharacterized protein LOC111010342 OS=Momordica charantia OX=3673 GN=LOC111010342 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 7.9e-25
Identity = 61/77 (79.22%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 1  MEDKVNVPTKRDWKQMGHEGATVAVHEEMKRVQQFPSNSTYATHRLRILNKILQLLSIQR 60
          ME KV+ P K +WKQMGHE  TV VH+EMKRVQQ PSNS YATHR R+LNKILQLLSIQR
Sbjct: 1  MESKVSAPPKNNWKQMGHEETTVTVHQEMKRVQQLPSNSAYATHRFRVLNKILQLLSIQR 60

Query: 61 TLSQEEELELLFSGLSL 78
          T SQEEELELLF+GLSL
Sbjct: 61 TASQEEELELLFAGLSL 77

[Close]

BLAST of CSPI03G41960 vs. ExPASy TrEMBL
Match: A0A6J1IHD5 (uncharacterized protein LOC111476958 OS=Cucurbita maxima OX=3661 GN=LOC111476958 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.3e-22
Identity = 61/77 (79.22%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 1  MEDKVNVPTKRDWKQMGHEGATVAVHEEMKRVQQFPSNSTYATHRLRILNKILQLLSIQR 60
          ME KV+V  K + KQMGH+ A V V EEMKRVQQ PSNSTYATHRLR+LNKILQLLSIQR
Sbjct: 1  MEGKVSVSPKNNGKQMGHQEAKVVVQEEMKRVQQLPSNSTYATHRLRVLNKILQLLSIQR 60

Query: 61 TLSQEEELELLFSGLSL 78
          T SQEEELELLF+GLSL
Sbjct: 61 TASQEEELELLFAGLSL 77

[Close]

BLAST of CSPI03G41960 vs. ExPASy TrEMBL
Match: A0A6J1F6C2 (uncharacterized protein LOC111442587 OS=Cucurbita moschata OX=3662 GN=LOC111442587 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.3e-22
Identity = 61/77 (79.22%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 1  MEDKVNVPTKRDWKQMGHEGATVAVHEEMKRVQQFPSNSTYATHRLRILNKILQLLSIQR 60
          ME KV+V  K + KQMGH+ A V V EEMKRVQQ PSNSTYATHRLR+LNKILQLLSIQR
Sbjct: 1  MEGKVSVSPKNNGKQMGHQEAKVVVQEEMKRVQQLPSNSTYATHRLRVLNKILQLLSIQR 60

Query: 61 TLSQEEELELLFSGLSL 78
          T SQEEELELLF+GLSL
Sbjct: 61 TASQEEELELLFAGLSL 77

[Close]

BLAST of CSPI03G41960 vs. NCBI nr
Match: XP_004150100.1 (uncharacterized protein LOC101214758 [Cucumis sativus] >XP_004150101.1 uncharacterized protein LOC101214758 [Cucumis sativus] >KGN59879.1 hypothetical protein Csa_002033 [Cucumis sativus])

HSP 1 Score: 151.0 bits (380), Expect = 4.3e-33
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MEDKVNVPTKRDWKQMGHEGATVAVHEEMKRVQQFPSNSTYATHRLRILNKILQLLSIQR 60
          MEDKVNVPTKRDWKQMGHEGATVAVHEEMKRVQQFPSNSTYATHRLRILNKILQLLSIQR
Sbjct: 1  MEDKVNVPTKRDWKQMGHEGATVAVHEEMKRVQQFPSNSTYATHRLRILNKILQLLSIQR 60

Query: 61 TLSQEEELELLFSGLSL 78
          TLSQEEELELLFSGLSL
Sbjct: 61 TLSQEEELELLFSGLSL 77

[Close]

BLAST of CSPI03G41960 vs. NCBI nr
Match: KAA0036794.1 (uncharacterized protein E6C27_scaffold20G00830 [Cucumis melo var. makuwa] >TYJ95861.1 uncharacterized protein E5676_scaffold110G001550 [Cucumis melo var. makuwa])

HSP 1 Score: 140.2 bits (352), Expect = 7.6e-30
Identity = 71/77 (92.21%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 1  MEDKVNVPTKRDWKQMGHEGATVAVHEEMKRVQQFPSNSTYATHRLRILNKILQLLSIQR 60
          MEDKV VP KRDWKQMGHE ATVAVHEEMKRVQ+FPSNSTYATHRLR+LNKILQLLSIQR
Sbjct: 1  MEDKVTVPPKRDWKQMGHEEATVAVHEEMKRVQKFPSNSTYATHRLRVLNKILQLLSIQR 60

Query: 61 TLSQEEELELLFSGLSL 78
          T+SQEEELELLFSGLSL
Sbjct: 61 TVSQEEELELLFSGLSL 77

[Close]

BLAST of CSPI03G41960 vs. NCBI nr
Match: XP_022139403.1 (uncharacterized protein LOC111010342 [Momordica charantia] >XP_022139404.1 uncharacterized protein LOC111010342 [Momordica charantia])

HSP 1 Score: 122.5 bits (306), Expect = 1.6e-24
Identity = 61/77 (79.22%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 1  MEDKVNVPTKRDWKQMGHEGATVAVHEEMKRVQQFPSNSTYATHRLRILNKILQLLSIQR 60
          ME KV+ P K +WKQMGHE  TV VH+EMKRVQQ PSNS YATHR R+LNKILQLLSIQR
Sbjct: 1  MESKVSAPPKNNWKQMGHEETTVTVHQEMKRVQQLPSNSAYATHRFRVLNKILQLLSIQR 60

Query: 61 TLSQEEELELLFSGLSL 78
          T SQEEELELLF+GLSL
Sbjct: 61 TASQEEELELLFAGLSL 77

[Close]

BLAST of CSPI03G41960 vs. NCBI nr
Match: XP_038898294.1 (uncharacterized protein LOC120085994 [Benincasa hispida] >XP_038898295.1 uncharacterized protein LOC120085994 [Benincasa hispida])

HSP 1 Score: 119.0 bits (297), Expect = 1.8e-23
Identity = 62/77 (80.52%), Postives = 67/77 (87.01%), Query Frame = 0


Query: 1  MEDKVNVPTKRDWKQMGHEGATVAVHEEMKRVQQFPSNSTYATHRLRILNKILQLLSIQR 60
          ME K  V  KR WKQM H+ AT AVHEEMKRVQ+ PSNSTYATHRLR+LNKILQLLSIQR
Sbjct: 1  MEGKFTVSPKRGWKQMEHKEATGAVHEEMKRVQRLPSNSTYATHRLRVLNKILQLLSIQR 60

Query: 61 TLSQEEELELLFSGLSL 78
          T+SQEEELELLF+GLSL
Sbjct: 61 TVSQEEELELLFAGLSL 77

[Close]

BLAST of CSPI03G41960 vs. NCBI nr
Match: KAG6591989.1 (hypothetical protein SDJN03_14335, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115.9 bits (289), Expect = 1.5e-22
Identity = 61/77 (79.22%), Postives = 66/77 (85.71%), Query Frame = 0


Query: 1  MEDKVNVPTKRDWKQMGHEGATVAVHEEMKRVQQFPSNSTYATHRLRILNKILQLLSIQR 60
          ME KV+V  K D KQMGH+ A V V EEMKRVQQ PSNSTYATHR+R+LNKILQLLSIQR
Sbjct: 17 MESKVSVLPKNDGKQMGHQEAKVVVQEEMKRVQQLPSNSTYATHRMRVLNKILQLLSIQR 76

Query: 61 TLSQEEELELLFSGLSL 78
          T SQEEELELLF+GLSL
Sbjct: 77 TASQEEELELLFAGLSL 93

[Close]

BLAST of CSPI03G41960 vs. TAIR 10
Match: AT3G13677.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 24 Blast hits to 24 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 77.0 bits (188), Expect = 7.3e-15
Identity = 39/65 (60.00%), Postives = 50/65 (76.92%), Query Frame = 0


Query: 13 WKQMGHEGATVAVHEEMKRVQQFPSNSTYATHRLRILNKILQLLSIQRTLSQEEELELLF 72
          W +M  +  +  + EE+KRV + PSNS YA HRL++LNKI  LLS+QRTLSQE+ELELLF
Sbjct: 12 WNEMDCDEKSSVIQEEIKRVCKLPSNSVYAVHRLKVLNKINDLLSVQRTLSQEKELELLF 71

Query: 73 SGLSL 78
          + LSL
Sbjct: 72 TQLSL 76

[Close]

BLAST of CSPI03G41960 vs. TAIR 10
Match: AT3G13677.1 (unknown protein; Has 24 Blast hits to 24 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 55.5 bits (132), Expect = 2.3e-08
Identity = 26/53 (49.06%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 13 WKQMGHEGATVAVHEEMKRVQQFPSNSTYATHRLRILNKILQLLSIQRTLSQE 66
          W +M  +  +  + EE+KRV + PSNS YA HRL++LNKI  LLS+Q  +S+E
Sbjct: 12 WNEMDCDEKSSVIQEEIKRVCKLPSNSVYAVHRLKVLNKINDLLSVQNIVSRE 64

The following BLAST results are available for this feature:

BLAST of CSPI03G41960 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G41960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFX0	2.1e-33	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G851790 PE=4 SV=1	[more]
A0A5A7SZV0	3.7e-30	92.21	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1CCW1	7.9e-25	79.22	uncharacterized protein LOC111010342 OS=Momordica charantia OX=3673 GN=LOC111010...	[more]
A0A6J1IHD5	1.3e-22	79.22	uncharacterized protein LOC111476958 OS=Cucurbita maxima OX=3661 GN=LOC111476958...	[more]
A0A6J1F6C2	1.3e-22	79.22	uncharacterized protein LOC111442587 OS=Cucurbita moschata OX=3662 GN=LOC1114425...	[more]

BLAST of CSPI03G41960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150100.1	4.3e-33	100.00	uncharacterized protein LOC101214758 [Cucumis sativus] >XP_004150101.1 uncharact...	[more]
KAA0036794.1	7.6e-30	92.21	uncharacterized protein E6C27_scaffold20G00830 [Cucumis melo var. makuwa] >TYJ95...	[more]
XP_022139403.1	1.6e-24	79.22	uncharacterized protein LOC111010342 [Momordica charantia] >XP_022139404.1 uncha...	[more]
XP_038898294.1	1.8e-23	80.52	uncharacterized protein LOC120085994 [Benincasa hispida] >XP_038898295.1 unchara...	[more]
KAG6591989.1	1.5e-22	79.22	hypothetical protein SDJN03_14335, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CSPI03G41960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G13677.2	7.3e-15	60.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G13677.1	2.3e-08	49.06	unknown protein; Has 24 Blast hits to 24 proteins in 11 species: Archae - 0; Bac...	[more]

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G41960.2	CSPI03G41960.2	mRNA
CSPI03G41960.1	CSPI03G41960.1	mRNA
CSPI03G41960.3	CSPI03G41960.3	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane