CSPI03G39300 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G39300
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr3: 33832416 .. 33832622 (-)
RNA-Seq ExpressionCSPI03G39300
SyntenyCSPI03G39300
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCCAATTACTTGTATGCCCCCAATCTTTGTTGGAGCTGTTCGTATAAAGCTTCTGTTGCCGGTTCTTAAGCTCCACCGCCTTGCCTTTCTCGATTATGTAGTTAATAAAAGACGCAAGAATAACGTCTCTGTTCCGGCGGTGGAACTTGAGGTAGTAGAATCGTTTCTCATAAGCAAAGGAGAAGACAACATAGTGAAATAG

mRNA sequence

ATGCCTCCAATTACTTGTATGCCCCCAATCTTTGTTGGAGCTGTTCGTATAAAGCTTCTGTTGCCGGTTCTTAAGCTCCACCGCCTTGCCTTTCTCGATTATGTAGTTAATAAAAGACGCAAGAATAACGTCTCTGTTCCGGCGGTGGAACTTGAGGTAGTAGAATCGTTTCTCATAAGCAAAGGAGAAGACAACATAGTGAAATAG

Coding sequence (CDS)

ATGCCTCCAATTACTTGTATGCCCCCAATCTTTGTTGGAGCTGTTCGTATAAAGCTTCTGTTGCCGGTTCTTAAGCTCCACCGCCTTGCCTTTCTCGATTATGTAGTTAATAAAAGACGCAAGAATAACGTCTCTGTTCCGGCGGTGGAACTTGAGGTAGTAGAATCGTTTCTCATAAGCAAAGGAGAAGACAACATAGTGAAATAG

Protein sequence

MPPITCMPPIFVGAVRIKLLLPVLKLHRLAFLDYVVNKRRKNNVSVPAVELEVVESFLISKGEDNIVK*
Homology
[Close]
BLAST of CSPI03G39300 vs. NCBI nr
Match: KAE8651229.1 (hypothetical protein Csa_023513 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 2.7e-15
Identity = 45/47 (95.74%), Postives = 46/47 (97.87%), Query Frame = 0 

Query: 1  MPPITCMPPIFVGAVRIKLLLPVLKLHRLAFLDYVVNKRRKNNVSVP 48
          MPPITCMPPIFVGAVRIKLLLPVLKLHRLAFLDYV+NKR KNNVSVP
Sbjct: 1  MPPITCMPPIFVGAVRIKLLLPVLKLHRLAFLDYVINKRGKNNVSVP 47

[Close]
BLAST of CSPI03G39300 vs. NCBI nr
Match: KAG6580986.1 (hypothetical protein SDJN03_20988, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.2 bits (165), Expect = 3.2e-08
Identity = 37/61 (60.66%), Postives = 42/61 (68.85%), Query Frame = 0 

Query: 1  MPPITCMPPIFVGAVRIKLLLPVLKLHRLAFLDYVVNKRRKNNVSVPAVELEVVESFLIS 60
          MPPI  MPP  +G V IKL LP+  LHRLA    V+NKR KN V V AVE E+VESFLI 
Sbjct: 6  MPPIAFMPPFAIGIVHIKLPLPIPLLHRLALFPDVINKRPKNGVPVSAVESEMVESFLIG 65

Query: 61 K 62
          +
Sbjct: 66 R 66

The following BLAST results are available for this feature:
BLAST of CSPI03G39300 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI03G39300 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI03G39300 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8651229.12.7e-1595.74hypothetical protein Csa_023513 [Cucumis sativus][more]
KAG6580986.13.2e-0860.66hypothetical protein SDJN03_20988, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of CSPI03G39300 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G39300.1CSPI03G39300.1mRNA