|
|
Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGAAACGTAAGATTCCGAGGAAGGATTTCATTCCGATTTTTACTCCGAAACGAGCTGGCTTCACCGATGACCAGAATTTCTTCCTTTGTTCGATGTCATCTAGAGTCTCGTTTGAACCAAGAAGACCTTGGGGGTTTTCAGCTAGAGTGAAGAGTGTTCTTCGAATTACACTTGAATCGGCTGATGGAATTCTTACACTCCAAACTCCAAACTGTTTTTTGTACTCTAACAATGGTCCTTTTGGAGTTGAACAACTAACAATCTACATAACATAA mRNA sequence ATGAAACGTAAGATTCCGAGGAAGGATTTCATTCCGATTTTTACTCCGAAACGAGCTGGCTTCACCGATGACCAGAATTTCTTCCTTTGTTCGATGTCATCTAGAGTCTCGTTTGAACCAAGAAGACCTTGGGGGTTTTCAGCTAGAGTGAAGAGTGTTCTTCGAATTACACTTGAATCGGCTGATGGAATTCTTACACTCCAAACTCCAAACTGTTTTTTGTACTCTAACAATGGTCCTTTTGGAGTTGAACAACTAACAATCTACATAACATAA Coding sequence (CDS) ATGAAACGTAAGATTCCGAGGAAGGATTTCATTCCGATTTTTACTCCGAAACGAGCTGGCTTCACCGATGACCAGAATTTCTTCCTTTGTTCGATGTCATCTAGAGTCTCGTTTGAACCAAGAAGACCTTGGGGGTTTTCAGCTAGAGTGAAGAGTGTTCTTCGAATTACACTTGAATCGGCTGATGGAATTCTTACACTCCAAACTCCAAACTGTTTTTTGTACTCTAACAATGGTCCTTTTGGAGTTGAACAACTAACAATCTACATAACATAA Protein sequence MKRKIPRKDFIPIFTPKRAGFTDDQNFFLCSMSSRVSFEPRRPWGFSARVKSVLRITLESADGILTLQTPNCFLYSNNGPFGVEQLTIYIT*
Homology
BLAST of CSPI03G38620 vs. ExPASy TrEMBL
Match: A0A0P0X878 (Os07g0597050 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0597050 PE=4 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 5.7e-06 Identity = 34/82 (41.46%), Postives = 39/82 (47.56%), Query Frame = 0
Query: 1 MKRKIPRKDFIPIFTPKRAGFTDDQNFFLCSMSSRVSFEPRRPWGFSARVKSVLRITLES 60
M +P KD FTPK AG T+DQ FLCS S S P RP G V VL T S
Sbjct: 7 MNCAMPSKDLEVSFTPKCAGLTEDQKLFLCSAKSVDSSTPGRPSGCCVTVDRVLFTTTVS 66
Query: 61 ADGILTLQTPNCFLYSNNGPFG 83
A+G + P+ S P G
Sbjct: 67 AEGNFIVHNPSALSCSTRDPLG 88
BLAST of CSPI03G38620 vs. NCBI nr
Match: KAB8106216.1 (hypothetical protein EE612_040453, partial [Oryza sativa]) HSP 1 Score: 63.5 bits (153), Expect = 1.1e-06 Identity = 36/82 (43.90%), Postives = 40/82 (48.78%), Query Frame = 0
Query: 1 MKRKIPRKDFIPIFTPKRAGFTDDQNFFLCSMSSRVSFEPRRPWGFSARVKSVLRITLES 60
MK P KD FTPK AG T+DQ FLCS S S P RP G S V VL T S
Sbjct: 7 MKSSPPSKDLEVSFTPKCAGLTEDQKLFLCSAKSVDSSTPGRPSGCSVTVDRVLFTTTVS 66
Query: 61 ADGILTLQTPNCFLYSNNGPFG 83
A+G + P+ S P G
Sbjct: 67 AEGNFIVHNPSALSCSTRDPLG 88
BLAST of CSPI03G38620 vs. NCBI nr
Match: BAT02484.1 (Os07g0597050, partial [Oryza sativa Japonica Group]) HSP 1 Score: 60.1 bits (144), Expect = 1.2e-05 Identity = 34/82 (41.46%), Postives = 39/82 (47.56%), Query Frame = 0
Query: 1 MKRKIPRKDFIPIFTPKRAGFTDDQNFFLCSMSSRVSFEPRRPWGFSARVKSVLRITLES 60
M +P KD FTPK AG T+DQ FLCS S S P RP G V VL T S
Sbjct: 7 MNCAMPSKDLEVSFTPKCAGLTEDQKLFLCSAKSVDSSTPGRPSGCCVTVDRVLFTTTVS 66
Query: 61 ADGILTLQTPNCFLYSNNGPFG 83
A+G + P+ S P G
Sbjct: 67 AEGNFIVHNPSALSCSTRDPLG 88
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0P0X878 | 5.7e-06 | 41.46 | Os07g0597050 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os07... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAB8106216.1 | 1.1e-06 | 43.90 | hypothetical protein EE612_040453, partial [Oryza sativa] | [more] |
| BAT02484.1 | 1.2e-05 | 41.46 | Os07g0597050, partial [Oryza sativa Japonica Group] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
|
