CSPI03G34860 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G34860
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	F-box domain-containing protein
Location	Chr3: 30592496 .. 30593679 (-)
RNA-Seq Expression	CSPI03G34860
Synteny	CSPI03G34860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACACTTACCAGTTGAAGTTACTGGAAACATACTTTCTCATCTAAAATCTGCTAGAGATGCGGTGATTGCTTCGGTTACTTGTAAGAAATGGAGAGAGGCTTGGCGGAATCACCTCCATTCTTTGACCTTCAACTCGAATGTTTGGCCTTATCCTGATGAAATTTCAACGTGAACCTTGGAAGTTATTATAACACAAACAATACCTCAGACCACTGGACTTCAGAACTTGTCCATTTTCATGGATGATGATGTAGATGCATTCTTCTCGTTGATTTCTTGGCTCATGTGTACGAGAGACACAATCTGTTGACTTCACTATAATGTGAAGACTATTCCAAGTATCAATGTAATTGATAAGTGTGGTGGACAAAAACTGGAAAGGCTAATAATTCGATAAGCGGCATTGAACCGACGTATCATAAGTTCTCTTGCTTGAAATATCTATCTCTCAGTAATATCATCATATCTGCATTAGATTTGAACCTTCTTCTTGCAGTTTGTCTCAAGCTTGAAAAGTTCGCTCTAATTAACCCAGAACTTGTGATGTCAGATACGCAGACAGCAATGGAACATAGCAGTTCTTCATTGAAGGATATCTTTGTTGGAAACCTCGGTTTATAGAAGTTCACTCTAGAGCTTGATACCCTTGAAATTTTACATTTTAAAGAATGTGCTATACATATTTTTGAGCTCATTGGAAAAGCAACTCTAATGAGTCTTGAAGATAGACGATTTTAGTGGTTTCCAACTGAATGTAGGCAAGAACATATGAAATTATGGACGTCTGCAGTTTTGCTTCGGATGTGAGGTGCAGCATGTGATTATAGTGATGAAGATGTGGATTTGTACTCAATTTCCATCTCTTTCTCCAAGTTAAGCTATTTATCTTTGCATTATTATCCAAGGCATGGAACCTTTCATCATAACTTTCGGGAATCCTTTCAGATGGAGAATGTGACCATACTAGAACTTGGATGGAGCGACACTAGCGATCCCTTCTCTAACTGGGTGGCTAAACTTCTTGAAAAATGCCCTAAGTTGAAGAAATTGATAATTTGTGGGGCTGTATCAGAGATTAATAACCACGAGGAATGCCAAAACTTAGCTCGCTTCATCACATATTTCGTTGAACTTATGAGAAAATATCTGCATATTGAGGTCCAGTCTGGTTTCGAATAG

mRNA sequence

ATGGAACACTTACCAGTTGAAGTTACTGGAAACATACTTTCTCATCTAAAATCTGCTAGAGATGCGGTGATTGCTTCGGTTACTTGTAAGAAATGGAGAGAGGCTTGGCGGAATCACCTCCATTCTTTGACCTTCAACTCGAATGTTTGGCCTTATCCTGATGAAATTTCAACTAATATCATCATATCTGCATTAGATTTGAACCTTCTTCTTGCAGTTTGTCTCAAGCTTGAAAAGTTCGCTCTAATTAACCCAGAACTTGTGATGTCAGATACGCAGACAGCAATGGAACATAGCAGTTCTTCATTGAAGGATATCTTTGTTGGAAACCTCGGTGCAGCATGTGATTATAGTGATGAAGATGTGGATTTGTACTCAATTTCCATCTCTTTCTCCAAGTTAAGCTATTTATCTTTGCATTATTATCCAAGGCATGGAACCTTTCATCATAACTTTCGGGAATCCTTTCAGATGGAGAATGTGACCATACTAGAACTTGGATGGAGCGACACTAGCGATCCCTTCTCTAACTGGGTGGCTAAACTTCTTGAAAAATGCCCTAAGTTGAAGAAATTGATAATTTGTGGGGCTGTATCAGAGATTAATAACCACGAGGAATGCCAAAACTTAGCTCGCTTCATCACATATTTCGTTGAACTTATGAGAAAATATCTGCATATTGAGGTCCAGTCTGGTTTCGAATAG

Coding sequence (CDS)

ATGGAACACTTACCAGTTGAAGTTACTGGAAACATACTTTCTCATCTAAAATCTGCTAGAGATGCGGTGATTGCTTCGGTTACTTGTAAGAAATGGAGAGAGGCTTGGCGGAATCACCTCCATTCTTTGACCTTCAACTCGAATGTTTGGCCTTATCCTGATGAAATTTCAACTAATATCATCATATCTGCATTAGATTTGAACCTTCTTCTTGCAGTTTGTCTCAAGCTTGAAAAGTTCGCTCTAATTAACCCAGAACTTGTGATGTCAGATACGCAGACAGCAATGGAACATAGCAGTTCTTCATTGAAGGATATCTTTGTTGGAAACCTCGGTGCAGCATGTGATTATAGTGATGAAGATGTGGATTTGTACTCAATTTCCATCTCTTTCTCCAAGTTAAGCTATTTATCTTTGCATTATTATCCAAGGCATGGAACCTTTCATCATAACTTTCGGGAATCCTTTCAGATGGAGAATGTGACCATACTAGAACTTGGATGGAGCGACACTAGCGATCCCTTCTCTAACTGGGTGGCTAAACTTCTTGAAAAATGCCCTAAGTTGAAGAAATTGATAATTTGTGGGGCTGTATCAGAGATTAATAACCACGAGGAATGCCAAAACTTAGCTCGCTTCATCACATATTTCGTTGAACTTATGAGAAAATATCTGCATATTGAGGTCCAGTCTGGTTTCGAATAG

Protein sequence

MEHLPVEVTGNILSHLKSARDAVIASVTCKKWREAWRNHLHSLTFNSNVWPYPDEISTNIIISALDLNLLLAVCLKLEKFALINPELVMSDTQTAMEHSSSSLKDIFVGNLGAACDYSDEDVDLYSISISFSKLSYLSLHYYPRHGTFHHNFRESFQMENVTILELGWSDTSDPFSNWVAKLLEKCPKLKKLIICGAVSEINNHEECQNLARFITYFVELMRKYLHIEVQSGFE*

Homology

[Close]

BLAST of CSPI03G34860 vs. ExPASy Swiss-Prot
Match: Q9ZW88 (F-box/LRR-repeat protein At1g67190 OS=Arabidopsis thaliana OX=3702 GN=At1g67190 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.3e-38
Identity = 122/419 (29.12%), Postives = 163/419 (38.90%), Query Frame = 0


Query: 1   MEHLPVEVTGNILSHLKSARDAVIASVTCKKWREAWRNHLHSLTFNSNVWPYPDEISTN- 60
           M++LPVEV GNILS L  ARD VIAS TC+KWREA R HL +L+FNS  WP+  +++TN 
Sbjct: 1   MDYLPVEVIGNILSRLGGARDVVIASATCRKWREACRKHLQTLSFNSADWPFYRDLTTNR 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  LEILITQTIFQTMGLQGLSIMMDDANKFSAATVIAWLMYTRDTLRRLSYNVRTTPNVNIL 120

Query: 121 --------------------------------------IIISALDLNLLLAVCLKLEKFA 180
                                                 + ISALDLNLLL+ C  +E   
Sbjct: 121 EICGRQKLEALVLAHNSITGVEPSFQRFPCLKSLSLSYVSISALDLNLLLSACPMIESLE 180

Query: 181 LINPELVMSDTQTAMEHSSSSLKDIF-------------------------------VGN 235
           L++ E+ MSD Q  +E SS +LK ++                               +GN
Sbjct: 181 LVSLEIAMSDAQVTIELSSPTLKSVYFDGISLDKFILEADSIEFLHMKDCVLELFELIGN 240

[Close]

BLAST of CSPI03G34860 vs. ExPASy TrEMBL
Match: A0A0A0LEK3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G776870 PE=4 SV=1)

HSP 1 Score: 359.4 bits (921), Expect = 1.2e-95
Identity = 189/234 (80.77%), Postives = 195/234 (83.33%), Query Frame = 0


Query: 1   MEHLPVEVTGNILSHLKSARDAVIASVTCKKWREAWRNHLHSLTFNSNVWPYPDEISTNI 60
           MEHLPVEV GNILSHLKSARDAVIAS T  +              N +++   D  +   
Sbjct: 1   MEHLPVEVIGNILSHLKSARDAVIASTTGLQ--------------NLSIFMDDDVDAFFS 60

Query: 61  IISALDLNLLLAVCLKLEKFALINPELVMSDTQTAMEHSSSSLKDIFVGNLGAACDYSDE 120
           +IS       L  CLKLEKFALINPELVMSDTQTAMEHSSS LKDIFVGNLGAACDYSDE
Sbjct: 61  LIS------WLMFCLKLEKFALINPELVMSDTQTAMEHSSSPLKDIFVGNLGAACDYSDE 120

Query: 121 DVDLYSISISFSKLSYLSLHYYPRHGTFHHNFRESFQMENVTILELGWSDTSDPFSNWVA 180
           DVDLYSISISFSKLSYLSLHYYPRHGTFHHNFRESFQMENVTILELGWSDTSDPFSNWVA
Sbjct: 121 DVDLYSISISFSKLSYLSLHYYPRHGTFHHNFRESFQMENVTILELGWSDTSDPFSNWVA 180

Query: 181 KLLEKCPKLKKLIICGAVSEINNHEECQNLARFITYFVELMRKYLHIEVQSGFE 235
           KLLEKCPKLKKLIICGAVSEINNHEECQNLA FITYFVELMRKYLHIEVQ GFE
Sbjct: 181 KLLEKCPKLKKLIICGAVSEINNHEECQNLAHFITYFVELMRKYLHIEVQFGFE 214

[Close]

BLAST of CSPI03G34860 vs. ExPASy TrEMBL
Match: A0A6J1CTB9 (F-box/LRR-repeat protein At1g67190-like OS=Momordica charantia OX=3673 GN=LOC111014389 PE=4 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 2.4e-61
Identity = 170/420 (40.48%), Postives = 185/420 (44.05%), Query Frame = 0


Query: 1   MEHLPVEVTGNILSHLKSARDAVIASVTCKKWREAWRNHLHSLTFNSNVWPYPDEIST-- 60
           MEHLPVEV GNILSHLK+ARD VIAS TCKKWREAWRNHLH+LTFNSN WP P ++ST  
Sbjct: 1   MEHLPVEVIGNILSHLKAARDVVIASATCKKWREAWRNHLHTLTFNSNDWPIPHDLSTST 60

Query: 61  ---------------------------------------------------------NII 120
                                                                    NII
Sbjct: 61  LEIIITQTILQTTGLQNLSVFMDDFDAFSASSVIAWLMYTRDTLCRLHYNVETTPSVNII 120

Query: 121 ----------------------------------------ISALDLNLLLAVCLKLEKFA 180
                                                   ISALDLNLLL  C KLEK A
Sbjct: 121 EKCGRQKLETLELANNSITGVEPTYQKFPCLKSLSLSDIGISALDLNLLLTACPKLEKLA 180

Query: 181 LINPELVMSDTQTAMEHSSSSLKDIFVGNLG----------------------------- 235
           LINPE+VMSD Q  +E SSSSLKD+FV  L                              
Sbjct: 181 LINPEVVMSDAQPTIELSSSSLKDVFVEGLSLDKFTLQADILEILHLRDCILDFFELIGK 240

[Close]

BLAST of CSPI03G34860 vs. ExPASy TrEMBL
Match: A0A251NA18 (F-box domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_7G111200 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 6.2e-49
Identity = 144/392 (36.73%), Postives = 174/392 (44.39%), Query Frame = 0


Query: 1   MEHLPVEVTGNILSHLKSARDAVIASVTCKKWREAWRNHLHSLTFNSNVWPY-----PDE 60
           MEHLPVEV GNILS LK+ARD VIAS TCKKWREAWRNHLH+L+FNSN W       P+E
Sbjct: 1   MEHLPVEVIGNILSRLKAARDVVIASATCKKWREAWRNHLHTLSFNSNDWSVYHDLAPNE 60

Query: 61  IS---------------------------TNII--------------------------- 120
            S                            NII                           
Sbjct: 61  FSAAPVIAWLMYTRDTLRQLHYNVRTTPNVNIIEKCSRQKLEVLSLAHNSVTGVEPSYQK 120

Query: 121 -------------ISALDLNLLLAVCLKLEKFALINPELVMSDTQTAMEHSSSSLKDIFV 180
                        ISALDL+LLL  C KL+   LINP++ MSD Q  ME +SSSLKDI+V
Sbjct: 121 FPCLKSLSLSYVSISALDLSLLLTACPKLQNLTLINPDIAMSDAQAIMELNSSSLKDIYV 180

Query: 181 ---------------------------------GNL------------------------ 235
                                            G+L                        
Sbjct: 181 EAVSLDKFMLEADSIENLHLKDCTLEAFELIGKGSLRVLKIDDVSVLHLDIGENTENLQI 240

[Close]

BLAST of CSPI03G34860 vs. ExPASy TrEMBL
Match: A0A6P4AQM1 (F-box/LRR-repeat protein At1g67190 OS=Ziziphus jujuba OX=326968 GN=LOC107432221 PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 7.6e-47
Identity = 137/419 (32.70%), Postives = 171/419 (40.81%), Query Frame = 0


Query: 1   MEHLPVEVTGNILSHLKSARDAVIASVTCKKWREAWRNHLHSLTFNSNVWPYPDEIS--- 60
           MEHLPVEV GNILS L++ARD VIAS TCKKWREAWRNHLH+L+FNSN WP   ++S   
Sbjct: 1   MEHLPVEVIGNILSRLRAARDVVIASATCKKWREAWRNHLHTLSFNSNDWPVYHDLSARK 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  LEILITQTIFQTTGLQCLSIFMDDVDEFSAAPVIAWLMYTRETLRQLHYNVKTTPNVNII 120

Query: 121 ------------------------------------TNIIISALDLNLLLAVCLKLEKFA 180
                                               +++ ISAL+L+LLL  C KLE  A
Sbjct: 121 EKCGRHKLEVLALANNSITGVEPSYQRFPCLKSLSLSHVSISALELSLLLTACSKLETLA 180

Query: 181 LINPELVMSDTQTAMEHSSSSLKDIFVGNL------------------------------ 235
           LINP++ MSD Q  ME +S SLKDI++  +                              
Sbjct: 181 LINPDIAMSDAQATMELNSLSLKDIYIEAISMDKFILEADSLENLHLKDCTLEFFELVSK 240

[Close]

BLAST of CSPI03G34860 vs. ExPASy TrEMBL
Match: A0A1S3CHA3 (F-box/LRR-repeat protein At1g67190 OS=Cucumis melo OX=3656 GN=LOC103500896 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 1.3e-46
Identity = 143/419 (34.13%), Postives = 172/419 (41.05%), Query Frame = 0


Query: 1   MEHLPVEVTGNILSHLKSARDAVIASVTCKKWREAWRNHLHSLTFNSNVWPYPDEIST-- 60
           MEHLPVEV GNILS L+ ARDAVIASVTCKKWREAWRNHLH+L+F+S  WP   E+ST  
Sbjct: 1   MEHLPVEVIGNILSQLRGARDAVIASVTCKKWREAWRNHLHTLSFDSQDWPVYHELSTSR 60

Query: 61  ---------------------------------------------------------NII 120
                                                                    NII
Sbjct: 61  LEILITQTIFQTTALQHLAISMEEVDEFSAAPVMAWLMYTRDTLRQLHYKVKTTPIFNII 120

Query: 121 ----------------------------------------ISALDLNLLLAVCLKLEKFA 180
                                                   +S LDL LLL  C KLEK A
Sbjct: 121 EKCGRQKLEVLALAHNSITGVEPSYQKFPCLKSLSLSHVSVSTLDLTLLLTTCPKLEKLA 180

Query: 181 LINPELVMSDTQTAMEHSSSSLKDIFVGNL------------------------------ 235
           LI+P++ MSD    ME SSSSLKDI+V  +                              
Sbjct: 181 LISPDIAMSD----MEVSSSSLKDIYVEAISLDKFILEADTLEVMHLKDCTLELFEVVSK 240

[Close]

BLAST of CSPI03G34860 vs. NCBI nr
Match: KAE8651088.1 (hypothetical protein Csa_002699 [Cucumis sativus])

HSP 1 Score: 317.0 bits (811), Expect = 1.4e-82
Identity = 168/215 (78.14%), Postives = 177/215 (82.33%), Query Frame = 0


Query: 23  VIASVTCKKWREAWRNHLHS---LTFNSNVWPYPDEISTNIIISALDLNLLLAVCLKLEK 82
           VI+S+       + +NH HS    T   N+  + D+     + +   L   L  CLKLEK
Sbjct: 69  VISSIPPTVASNSLQNHSHSCIETTGLQNLSIFMDD----DVDAFFSLISWLMFCLKLEK 128

Query: 83  FALINPELVMSDTQTAMEHSSSSLKDIFVGNLGAACDYSDEDVDLYSISISFSKLSYLSL 142
           FALINPELVMSDTQTAMEHSSS LKDIFVGNL  ACDYSDEDVDLYSISISFSKLSYLSL
Sbjct: 129 FALINPELVMSDTQTAMEHSSSPLKDIFVGNL--ACDYSDEDVDLYSISISFSKLSYLSL 188

Query: 143 HYYPRHGTFHHNFRESFQMENVTILELGWSDTSDPFSNWVAKLLEKCPKLKKLIICGAVS 202
           HYYPRHGTFHHNFRESFQMENVTILELGWSDTSDPFSNWVAKLLEKCPKLKKLIICGAVS
Sbjct: 189 HYYPRHGTFHHNFRESFQMENVTILELGWSDTSDPFSNWVAKLLEKCPKLKKLIICGAVS 248

Query: 203 EINNHEECQNLARFITYFVELMRKYLHIEVQSGFE 235
           EINNHEECQNLA FITYFVELMRKYLHIEVQ GFE
Sbjct: 249 EINNHEECQNLAHFITYFVELMRKYLHIEVQFGFE 277

[Close]

BLAST of CSPI03G34860 vs. NCBI nr
Match: XP_022144792.1 (F-box/LRR-repeat protein At1g67190-like [Momordica charantia] >XP_022144793.1 F-box/LRR-repeat protein At1g67190-like [Momordica charantia] >XP_022144794.1 F-box/LRR-repeat protein At1g67190-like [Momordica charantia])

HSP 1 Score: 245.4 bits (625), Expect = 5.0e-61
Identity = 170/420 (40.48%), Postives = 185/420 (44.05%), Query Frame = 0


Query: 1   MEHLPVEVTGNILSHLKSARDAVIASVTCKKWREAWRNHLHSLTFNSNVWPYPDEIST-- 60
           MEHLPVEV GNILSHLK+ARD VIAS TCKKWREAWRNHLH+LTFNSN WP P ++ST  
Sbjct: 1   MEHLPVEVIGNILSHLKAARDVVIASATCKKWREAWRNHLHTLTFNSNDWPIPHDLSTST 60

Query: 61  ---------------------------------------------------------NII 120
                                                                    NII
Sbjct: 61  LEIIITQTILQTTGLQNLSVFMDDFDAFSASSVIAWLMYTRDTLCRLHYNVETTPSVNII 120

Query: 121 ----------------------------------------ISALDLNLLLAVCLKLEKFA 180
                                                   ISALDLNLLL  C KLEK A
Sbjct: 121 EKCGRQKLETLELANNSITGVEPTYQKFPCLKSLSLSDIGISALDLNLLLTACPKLEKLA 180

Query: 181 LINPELVMSDTQTAMEHSSSSLKDIFVGNLG----------------------------- 235
           LINPE+VMSD Q  +E SSSSLKD+FV  L                              
Sbjct: 181 LINPEVVMSDAQPTIELSSSSLKDVFVEGLSLDKFTLQADILEILHLRDCILDFFELIGK 240

[Close]

BLAST of CSPI03G34860 vs. NCBI nr
Match: ONH96176.1 (hypothetical protein PRUPE_7G111200 [Prunus persica] >ONH96177.1 hypothetical protein PRUPE_7G111200 [Prunus persica])

HSP 1 Score: 204.1 bits (518), Expect = 1.3e-48
Identity = 144/392 (36.73%), Postives = 174/392 (44.39%), Query Frame = 0


Query: 1   MEHLPVEVTGNILSHLKSARDAVIASVTCKKWREAWRNHLHSLTFNSNVWPY-----PDE 60
           MEHLPVEV GNILS LK+ARD VIAS TCKKWREAWRNHLH+L+FNSN W       P+E
Sbjct: 1   MEHLPVEVIGNILSRLKAARDVVIASATCKKWREAWRNHLHTLSFNSNDWSVYHDLAPNE 60

Query: 61  IS---------------------------TNII--------------------------- 120
            S                            NII                           
Sbjct: 61  FSAAPVIAWLMYTRDTLRQLHYNVRTTPNVNIIEKCSRQKLEVLSLAHNSVTGVEPSYQK 120

Query: 121 -------------ISALDLNLLLAVCLKLEKFALINPELVMSDTQTAMEHSSSSLKDIFV 180
                        ISALDL+LLL  C KL+   LINP++ MSD Q  ME +SSSLKDI+V
Sbjct: 121 FPCLKSLSLSYVSISALDLSLLLTACPKLQNLTLINPDIAMSDAQAIMELNSSSLKDIYV 180

Query: 181 ---------------------------------GNL------------------------ 235
                                            G+L                        
Sbjct: 181 EAVSLDKFMLEADSIENLHLKDCTLEAFELIGKGSLRVLKIDDVSVLHLDIGENTENLQI 240

[Close]

BLAST of CSPI03G34860 vs. NCBI nr
Match: XP_015898796.1 (F-box/LRR-repeat protein At1g67190 [Ziziphus jujuba] >XP_015898797.1 F-box/LRR-repeat protein At1g67190 [Ziziphus jujuba] >XP_015898798.1 F-box/LRR-repeat protein At1g67190 [Ziziphus jujuba] >XP_015898799.1 F-box/LRR-repeat protein At1g67190 [Ziziphus jujuba] >XP_015898800.1 F-box/LRR-repeat protein At1g67190 [Ziziphus jujuba] >XP_015898801.1 F-box/LRR-repeat protein At1g67190 [Ziziphus jujuba] >XP_024922432.1 F-box/LRR-repeat protein At1g67190 [Ziziphus jujuba] >XP_024922433.1 F-box/LRR-repeat protein At1g67190 [Ziziphus jujuba])

HSP 1 Score: 197.2 bits (500), Expect = 1.6e-46
Identity = 137/419 (32.70%), Postives = 171/419 (40.81%), Query Frame = 0


Query: 1   MEHLPVEVTGNILSHLKSARDAVIASVTCKKWREAWRNHLHSLTFNSNVWPYPDEIS--- 60
           MEHLPVEV GNILS L++ARD VIAS TCKKWREAWRNHLH+L+FNSN WP   ++S   
Sbjct: 1   MEHLPVEVIGNILSRLRAARDVVIASATCKKWREAWRNHLHTLSFNSNDWPVYHDLSARK 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  LEILITQTIFQTTGLQCLSIFMDDVDEFSAAPVIAWLMYTRETLRQLHYNVKTTPNVNII 120

Query: 121 ------------------------------------TNIIISALDLNLLLAVCLKLEKFA 180
                                               +++ ISAL+L+LLL  C KLE  A
Sbjct: 121 EKCGRHKLEVLALANNSITGVEPSYQRFPCLKSLSLSHVSISALELSLLLTACSKLETLA 180

Query: 181 LINPELVMSDTQTAMEHSSSSLKDIFVGNL------------------------------ 235
           LINP++ MSD Q  ME +S SLKDI++  +                              
Sbjct: 181 LINPDIAMSDAQATMELNSLSLKDIYIEAISMDKFILEADSLENLHLKDCTLEFFELVSK 240

[Close]

BLAST of CSPI03G34860 vs. NCBI nr
Match: XP_008462566.1 (PREDICTED: F-box/LRR-repeat protein At1g67190 [Cucumis melo] >XP_008462567.1 PREDICTED: F-box/LRR-repeat protein At1g67190 [Cucumis melo])

HSP 1 Score: 196.4 bits (498), Expect = 2.7e-46
Identity = 143/419 (34.13%), Postives = 172/419 (41.05%), Query Frame = 0


Query: 1   MEHLPVEVTGNILSHLKSARDAVIASVTCKKWREAWRNHLHSLTFNSNVWPYPDEIST-- 60
           MEHLPVEV GNILS L+ ARDAVIASVTCKKWREAWRNHLH+L+F+S  WP   E+ST  
Sbjct: 1   MEHLPVEVIGNILSQLRGARDAVIASVTCKKWREAWRNHLHTLSFDSQDWPVYHELSTSR 60

Query: 61  ---------------------------------------------------------NII 120
                                                                    NII
Sbjct: 61  LEILITQTIFQTTALQHLAISMEEVDEFSAAPVMAWLMYTRDTLRQLHYKVKTTPIFNII 120

Query: 121 ----------------------------------------ISALDLNLLLAVCLKLEKFA 180
                                                   +S LDL LLL  C KLEK A
Sbjct: 121 EKCGRQKLEVLALAHNSITGVEPSYQKFPCLKSLSLSHVSVSTLDLTLLLTTCPKLEKLA 180

Query: 181 LINPELVMSDTQTAMEHSSSSLKDIFVGNL------------------------------ 235
           LI+P++ MSD    ME SSSSLKDI+V  +                              
Sbjct: 181 LISPDIAMSD----MEVSSSSLKDIYVEAISLDKFILEADTLEVMHLKDCTLELFEVVSK 240

[Close]

BLAST of CSPI03G34860 vs. TAIR 10
Match: AT1G67190.1 (F-box/RNI-like superfamily protein )

HSP 1 Score: 161.4 bits (407), Expect = 8.9e-40
Identity = 122/419 (29.12%), Postives = 163/419 (38.90%), Query Frame = 0


Query: 1   MEHLPVEVTGNILSHLKSARDAVIASVTCKKWREAWRNHLHSLTFNSNVWPYPDEISTN- 60
           M++LPVEV GNILS L  ARD VIAS TC+KWREA R HL +L+FNS  WP+  +++TN 
Sbjct: 1   MDYLPVEVIGNILSRLGGARDVVIASATCRKWREACRKHLQTLSFNSADWPFYRDLTTNR 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  LEILITQTIFQTMGLQGLSIMMDDANKFSAATVIAWLMYTRDTLRRLSYNVRTTPNVNIL 120

Query: 121 --------------------------------------IIISALDLNLLLAVCLKLEKFA 180
                                                 + ISALDLNLLL+ C  +E   
Sbjct: 121 EICGRQKLEALVLAHNSITGVEPSFQRFPCLKSLSLSYVSISALDLNLLLSACPMIESLE 180

Query: 181 LINPELVMSDTQTAMEHSSSSLKDIF-------------------------------VGN 235
           L++ E+ MSD Q  +E SS +LK ++                               +GN
Sbjct: 181 LVSLEIAMSDAQVTIELSSPTLKSVYFDGISLDKFILEADSIEFLHMKDCVLELFELIGN 240

[Close]

BLAST of CSPI03G34860 vs. TAIR 10
Match: AT1G67190.2 (F-box/RNI-like superfamily protein )

HSP 1 Score: 161.4 bits (407), Expect = 8.9e-40
Identity = 122/419 (29.12%), Postives = 163/419 (38.90%), Query Frame = 0


Query: 1   MEHLPVEVTGNILSHLKSARDAVIASVTCKKWREAWRNHLHSLTFNSNVWPYPDEISTN- 60
           M++LPVEV GNILS L  ARD VIAS TC+KWREA R HL +L+FNS  WP+  +++TN 
Sbjct: 1   MDYLPVEVIGNILSRLGGARDVVIASATCRKWREACRKHLQTLSFNSADWPFYRDLTTNR 60

Query: 61  ------------------------------------------------------------ 120
                                                                       
Sbjct: 61  LEILITQTIFQTMGLQGLSIMMDDANKFSAATVIAWLMYTRDTLRRLSYNVRTTPNVNIL 120

Query: 121 --------------------------------------IIISALDLNLLLAVCLKLEKFA 180
                                                 + ISALDLNLLL+ C  +E   
Sbjct: 121 EICGRQKLEALVLAHNSITGVEPSFQRFPCLKSLSLSYVSISALDLNLLLSACPMIESLE 180

Query: 181 LINPELVMSDTQTAMEHSSSSLKDIF-------------------------------VGN 235
           L++ E+ MSD Q  +E SS +LK ++                               +GN
Sbjct: 181 LVSLEIAMSDAQVTIELSSPTLKSVYFDGISLDKFILEADSIEFLHMKDCVLELFELIGN 240

The following BLAST results are available for this feature:

BLAST of CSPI03G34860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZW88	1.3e-38	29.12	F-box/LRR-repeat protein At1g67190 OS=Arabidopsis thaliana OX=3702 GN=At1g67190 ...	[more]

BLAST of CSPI03G34860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEK3	1.2e-95	80.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G776870 PE=4 SV=1	[more]
A0A6J1CTB9	2.4e-61	40.48	F-box/LRR-repeat protein At1g67190-like OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A251NA18	6.2e-49	36.73	F-box domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_7G111200 PE=4...	[more]
A0A6P4AQM1	7.6e-47	32.70	F-box/LRR-repeat protein At1g67190 OS=Ziziphus jujuba OX=326968 GN=LOC107432221 ...	[more]
A0A1S3CHA3	1.3e-46	34.13	F-box/LRR-repeat protein At1g67190 OS=Cucumis melo OX=3656 GN=LOC103500896 PE=4 ...	[more]

BLAST of CSPI03G34860 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651088.1	1.4e-82	78.14	hypothetical protein Csa_002699 [Cucumis sativus]	[more]
XP_022144792.1	5.0e-61	40.48	F-box/LRR-repeat protein At1g67190-like [Momordica charantia] >XP_022144793.1 F-...	[more]
ONH96176.1	1.3e-48	36.73	hypothetical protein PRUPE_7G111200 [Prunus persica] >ONH96177.1 hypothetical pr...	[more]
XP_015898796.1	1.6e-46	32.70	F-box/LRR-repeat protein At1g67190 [Ziziphus jujuba] >XP_015898797.1 F-box/LRR-r...	[more]
XP_008462566.1	2.7e-46	34.13	PREDICTED: F-box/LRR-repeat protein At1g67190 [Cucumis melo] >XP_008462567.1 PRE...	[more]

BLAST of CSPI03G34860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67190.1	8.9e-40	29.12	F-box/RNI-like superfamily protein	[more]
AT1G67190.2	8.9e-40	29.12	F-box/RNI-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 4..45 e-value: 2.5E-5 score: 33.7
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 2..37 e-value: 4.5E-6 score: 26.4
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 1..217 e-value: 3.4E-6 score: 28.2
None	No IPR available	PANTHER	PTHR31639:SF77	F-BOX/LRR-REPEAT PROTEIN	coord: 122..231 coord: 1..50
None	No IPR available	PANTHER	PTHR31639	F-BOX PROTEIN-LIKE	coord: 122..231 coord: 1..50
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 2..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G34860.1	CSPI03G34860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding