CSPI03G34010 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G34010
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	60S ribosomal protein L24-like
Location	Chr3: 29819935 .. 29822236 (+)
RNA-Seq Expression	CSPI03G34010
Synteny	CSPI03G34010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGAGTGAGTCAATTTTTCTCGCTGTTTGTAGCCCAAGCCCAAAGAAAGAGTCAGGCCCAAAAGATTGTCCAACAATTCCAATATAACCTACCGATTCAGCAGGGTTTTGTCTCTAGGGTTTCATCATCAACACAGCGCGGCAGGAAGTTAAGCATCACCAGCGGCCATGGTTCTCAAGTTCGTCAAATCCCTCATCTTTATTCTTTTTCTCTAGTTAGATCTCATTTTCAATTTGATTACATGTTTTCCGTTTTCGTTTTACATGTCAACATGTTCTTCCTGGTTCAGTTTTTTTCATTTGTACCTCCAATGCTAGCGCTCAAGAATTTTAGGGATTTACGTATTTTTCTATTGAGGAGTACGTCATGGTAAAAATGGCCCAGTATTTGGGATCGGCATCTGTTGTGGTTTAGTAATCTGGTTGGGAGGATATGTTTATGATTGATTATTAGTCACAGGGCTGGTAATTTAATTAAAGGGGAAGATTTAGATGGAAAGTTGTTTGCTTCTAGGAAGCATTGCTCTAATTTATTGTTTGAGCAAGCGAGTGCTTTGGATAATTGTACCATGGTTACTTGCTCGAACTAAGCGTGAAAATTTCGGTATTAATGTGCTCGGTTTCGTTCATGAACTCTGTATGTGGGAAAACAATTTCATGAATTCTGCTCTTAATTGTTTGATATTGGGCTTTTCAGGACCGAACTTTGTCGATTCAGTGGTGCCAAGATATACCCAGGGAAAGGCATCAGATTTGTCCGGGCTGATTCTCAGGTGATTTTCATTATACCATATATTGGACGAGTTTCGAGATGAATAGATGGACTTCATTCGTTACTAATTATTAATATATTCTTTTATATATTTGAATTATTCTTACTGATTTTCCCCTGTTTATTCGACCTTTTTCTTTATCAATCTGTTAGGTGTTTCTCTTTGCCAACTCAAAATGCAAGAGGTATTTCCACAACCGGCTGAAACCTTCGAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCATAAGAAGGTAATATTAAGATTTTCGATGGACTTTGTTTAGAATTTTTTGGGTTCATTTTTCTTGATTTGATGTCAAGAATATTTGGTGAATATTGTTTAGATTTTTTTGGGTTCATTTTATACAAGCCCCATCGTGTGGGTAATAATCATCCTCATCATCTGAGCTTGATTCTACCAAAATTTTGAAACAATCTCACAAGGGAACTTGCCAATACGAGTCATATTACTGTAATCCGTGTCACACCAAAAACAAAAAAGACTAGATCCAAATCTAGAGTTTATAGTATTGAGCCTAGTGGTAACTTAACAGCAATAATGAGGCATGATGATGTATATGCATATACGAAGTTGTCTTTATCATTGCTATTTTTATGTTAGTATTAACAGATTCAACTTTAAGTTTTATGATTAATCAAAATGATTTCCTAGTACTCCATTTGCAAGAAGTGTTAAAATTTTAATAAATCATCCATAGCCCGTGTCTTAAGCTATTCTCTGTGAATGCCGTTTTGCGTGTTTGGTGTGGGCTCATCTTTAATCCAGTCATATTTTTATATGTGTAGGATATTGCTCAAGAGGCTGTGAAGAAAAGGAGACGTGCCACAAAGAAGCCCTACTCTAGGTCCATTGTTGGTGCAACTTTGGAAGTCATCCAGAAGAAGAGGGCCGAAAAGCCAGAAGTGCGTGATGCTGCTAGAGAAGCTGCTCTCCGGTGTGTACTCTCATGAACGACTGATTGAAACTAGAATTGAAATGTTATATAACATACAAACATGAATTTTCACTGAATCCATGAATTTTGATTGAATTTCAGTGAAATTAAGGAAAGGATTAAGAAAACAAAGGACGAGAAGAAGGCCAAGAAGGCAGAAGTGTTGGCCAAGTCACAGAAGGCTCCAGGTAAGGGTAACGTTGCCAAGGGTCCTGCATCCAAGGGTCCAAAGCTTGGCGGTGGCGGCGGGAAGCGTTGATCACATATTTTGGTTTGTTTTGGTATTTAAATTGGCAAGTTTATTAGATAGGACATGTGTTAATTTGGAGTACTTCACGTGTTATGAGAAGTTATCTGTATTAATTGATTAACTTGTTGTGGCCTTAGTTGGTTTTGGAAAAAGTTTTACAATCGAGCAATGCAGTTATTTTTTGTTTGAGTTCTTTCATTCACATGTTACTCAATTTTGTGCTGCTATGGAGAGAGGCTTTCATCATGCATTTTTTTACTATTTAACCACTGGGAAAGATCTTGTGTTCACTGTGTAATTTGAAGTTTGTGACATTAGATG

mRNA sequence

CGGAGTGAGTCAATTTTTCTCGCTGTTTGTAGCCCAAGCCCAAAGAAAGAGTCAGGCCCAAAAGATTGTCCAACAATTCCAATATAACCTACCGATTCAGCAGGGTTTTGTCTCTAGGGTTTCATCATCAACACAGCGCGGCAGGAAGTTAAGCATCACCAGCGGCCATGGTTCTCAAGACCGAACTTTGTCGATTCAGTGGTGCCAAGATATACCCAGGGAAAGGCATCAGATTTGTCCGGGCTGATTCTCAGGTGTTTCTCTTTGCCAACTCAAAATGCAAGAGGTATTTCCACAACCGGCTGAAACCTTCGAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCATAAGAAGGATATTGCTCAAGAGGCTGTGAAGAAAAGGAGACGTGCCACAAAGAAGCCCTACTCTAGGTCCATTGTTGGTGCAACTTTGGAAGTCATCCAGAAGAAGAGGGCCGAAAAGCCAGAAGTGCGTGATGCTGCTAGAGAAGCTGCTCTCCGTGAAATTAAGGAAAGGATTAAGAAAACAAAGGACGAGAAGAAGGCCAAGAAGGCAGAAGTGTTGGCCAAGTCACAGAAGGCTCCAGGTAAGGGTAACGTTGCCAAGGGTCCTGCATCCAAGGGTCCAAAGCTTGGCGGTGGCGGCGGGAAGCGTTGATCACATATTTTGGTTTGTTTTGGTATTTAAATTGGCAAGTTTATTAGATAGGACATGTGTTAATTTGGAGTACTTCACGTGTTATGAGAAGTTATCTGTATTAATTGATTAACTTGTTGTGGCCTTAGTTGGTTTTGGAAAAAGTTTTACAATCGAGCAATGCAGTTATTTTTTGTTTGAGTTCTTTCATTCACATGTTACTCAATTTTGTGCTGCTATGGAGAGAGGCTTTCATCATGCATTTTTTTACTATTTAACCACTGGGAAAGATCTTGTGTTCACTGTGTAATTTGAAGTTTGTGACATTAGATG

Coding sequence (CDS)

ATGGTTCTCAAGACCGAACTTTGTCGATTCAGTGGTGCCAAGATATACCCAGGGAAAGGCATCAGATTTGTCCGGGCTGATTCTCAGGTGTTTCTCTTTGCCAACTCAAAATGCAAGAGGTATTTCCACAACCGGCTGAAACCTTCGAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCATAAGAAGGATATTGCTCAAGAGGCTGTGAAGAAAAGGAGACGTGCCACAAAGAAGCCCTACTCTAGGTCCATTGTTGGTGCAACTTTGGAAGTCATCCAGAAGAAGAGGGCCGAAAAGCCAGAAGTGCGTGATGCTGCTAGAGAAGCTGCTCTCCGTGAAATTAAGGAAAGGATTAAGAAAACAAAGGACGAGAAGAAGGCCAAGAAGGCAGAAGTGTTGGCCAAGTCACAGAAGGCTCCAGGTAAGGGTAACGTTGCCAAGGGTCCTGCATCCAAGGGTCCAAAGCTTGGCGGTGGCGGCGGGAAGCGTTGA

Protein sequence

MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR*

Homology

[Close]

BLAST of CSPI03G34010 vs. ExPASy Swiss-Prot
Match: O65743 (60S ribosomal protein L24 OS=Cicer arietinum OX=3827 GN=RPL24 PE=2 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 5.5e-73
Identity = 146/163 (89.57%), Postives = 153/163 (93.87%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPG+GIRF+R DSQVFLF NSKCKRYFHNRLKPSKLTWTAM+RKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGRGIRFIRGDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVKKRRRATKKPYSRSIVGATLEVIQKKR EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGK 164
           KTKDEKKAKKAEV +K+QK+ GKGNV KG   KGPK+GGGGGK
Sbjct: 121 KTKDEKKAKKAEVASKAQKSQGKGNVQKGALPKGPKMGGGGGK 163

[Close]

BLAST of CSPI03G34010 vs. ExPASy Swiss-Prot
Match: Q9FUL4 (60S ribosomal protein L24 OS=Prunus avium OX=42229 GN=RPL24 PE=2 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.5e-70
Identity = 146/160 (91.25%), Postives = 152/160 (95.00%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGKGIRF+R+DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRR TKKPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPAS-KGPKLGG 160
           KTKDEKKAKKAEV  KSQK+ GKG++AKG A  KGPKLGG
Sbjct: 121 KTKDEKKAKKAEV-TKSQKSQGKGSIAKGGAQPKGPKLGG 159

[Close]

BLAST of CSPI03G34010 vs. ExPASy Swiss-Prot
Match: P50888 (60S ribosomal protein L24 OS=Hordeum vulgare OX=4513 GN=RPL24 PE=2 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 1.8e-68
Identity = 143/164 (87.20%), Postives = 147/164 (89.63%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPGKGIRF+R+DSQVFLFANSKCKRYFHNRLKP+KL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPAKLCWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDI  EA KKRRR TKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIHAEAAKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 165
           KTKDEKKAKKAEV    +   GKG V KG  SKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVTKSQKSQGGKGAVQKG--SKGPKLGGGGGKR 162

[Close]

BLAST of CSPI03G34010 vs. ExPASy Swiss-Prot
Match: Q42347 (60S ribosomal protein L24-1 OS=Arabidopsis thaliana OX=3702 GN=RPL24A PE=1 SV=2)

HSP 1 Score: 258.8 bits (660), Expect = 4.1e-68
Identity = 138/164 (84.15%), Postives = 148/164 (90.24%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPG+GIRF+R+DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVK+RRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 165
           KTKDEKKAKK E  +K QK+  KGN+ K  A K  K+GGGGG+R
Sbjct: 121 KTKDEKKAKKVEYASKQQKSQVKGNIPKSAAPKAAKMGGGGGRR 164

[Close]

BLAST of CSPI03G34010 vs. ExPASy Swiss-Prot
Match: P38666 (60S ribosomal protein L24-2 OS=Arabidopsis thaliana OX=3702 GN=RPL24B PE=1 SV=2)

HSP 1 Score: 255.8 bits (652), Expect = 3.4e-67
Identity = 141/165 (85.45%), Postives = 148/165 (89.70%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPG+GIRF+R+DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVK+RRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAK-GPASKGPKLGGGGGKR 165
           KTKDEKKAKK E  +K QK   K N  K   ASKGPK+GGGGGKR
Sbjct: 121 KTKDEKKAKKVEFASKQQKV--KANFPKAAAASKGPKVGGGGGKR 163

[Close]

BLAST of CSPI03G34010 vs. ExPASy TrEMBL
Match: A0A0A0LGG6 (TRASH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G748210 PE=3 SV=1)

HSP 1 Score: 304.7 bits (779), Expect = 2.4e-79
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 165
           KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 164

[Close]

BLAST of CSPI03G34010 vs. ExPASy TrEMBL
Match: A0A1S3B6I5 (60S ribosomal protein L24-like OS=Cucumis melo OX=3656 GN=LOC103486557 PE=3 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 6.9e-79
Identity = 163/164 (99.39%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRR TKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 165
           KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 164

[Close]

BLAST of CSPI03G34010 vs. ExPASy TrEMBL
Match: A0A6J1J6E9 (60S ribosomal protein L24-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111481766 PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 1.0e-77
Identity = 159/164 (96.95%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG+KIYPG+GIRF+RADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGSKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRR T+KPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 165
           KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 164

[Close]

BLAST of CSPI03G34010 vs. ExPASy TrEMBL
Match: A0A6J1FAB6 (60S ribosomal protein L24-like OS=Cucurbita moschata OX=3662 GN=LOC111442264 PE=3 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 1.0e-77
Identity = 159/164 (96.95%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG+KIYPG+GIRF+RADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGSKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRR T+KPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 165
           KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 164

[Close]

BLAST of CSPI03G34010 vs. ExPASy TrEMBL
Match: A0A5A7TPC8 (60S ribosomal protein L24-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G003320 PE=3 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 5.0e-77
Identity = 159/163 (97.55%), Postives = 161/163 (98.77%), Query Frame = 0


Query: 2   VLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQH 61
           ++ TELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQH
Sbjct: 60  MITTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQH 119

Query: 62  KKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKK 121
           KKDIAQEAVKKRRR TKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKK
Sbjct: 120 KKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKK 179

Query: 122 TKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 165
           TKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR
Sbjct: 180 TKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 222

[Close]

BLAST of CSPI03G34010 vs. NCBI nr
Match: XP_004137862.1 (60S ribosomal protein L24 [Cucumis sativus] >KGN59041.1 hypothetical protein Csa_002195 [Cucumis sativus])

HSP 1 Score: 304.7 bits (779), Expect = 4.9e-79
Identity = 164/164 (100.00%), Postives = 164/164 (100.00%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 165
           KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 164

[Close]

BLAST of CSPI03G34010 vs. NCBI nr
Match: XP_008442779.1 (PREDICTED: 60S ribosomal protein L24-like [Cucumis melo])

HSP 1 Score: 303.1 bits (775), Expect = 1.4e-78
Identity = 163/164 (99.39%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRR TKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 165
           KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 164

[Close]

BLAST of CSPI03G34010 vs. NCBI nr
Match: XP_038903235.1 (60S ribosomal protein L24-like [Benincasa hispida])

HSP 1 Score: 302.0 bits (772), Expect = 3.2e-78
Identity = 162/164 (98.78%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGGKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRRAT+KPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRATRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 165
           KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 164

[Close]

BLAST of CSPI03G34010 vs. NCBI nr
Match: XP_022935353.1 (60S ribosomal protein L24-like [Cucurbita moschata] >XP_022983124.1 60S ribosomal protein L24-like isoform X2 [Cucurbita maxima] >XP_023527804.1 60S ribosomal protein L24-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 299.3 bits (765), Expect = 2.1e-77
Identity = 159/164 (96.95%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG+KIYPG+GIRF+RADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGSKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRR T+KPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 165
           KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 164

[Close]

BLAST of CSPI03G34010 vs. NCBI nr
Match: KAG6580651.1 (60S ribosomal protein L24, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 297.7 bits (761), Expect = 6.0e-77
Identity = 158/164 (96.34%), Postives = 162/164 (98.78%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG+KIYPG+GIRF+RADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 1   MVLKTELCRFSGSKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKDIAQEAVKKRRR T+KPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDIAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 165
           KTKDEKKAKK EVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR
Sbjct: 121 KTKDEKKAKKTEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 164

[Close]

BLAST of CSPI03G34010 vs. TAIR 10
Match: AT2G36620.1 (ribosomal protein L24 )

HSP 1 Score: 258.8 bits (660), Expect = 2.9e-69
Identity = 138/164 (84.15%), Postives = 148/164 (90.24%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPG+GIRF+R+DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVK+RRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 165
           KTKDEKKAKK E  +K QK+  KGN+ K  A K  K+GGGGG+R
Sbjct: 121 KTKDEKKAKKVEYASKQQKSQVKGNIPKSAAPKAAKMGGGGGRR 164

[Close]

BLAST of CSPI03G34010 vs. TAIR 10
Match: AT3G53020.1 (Ribosomal protein L24e family protein )

HSP 1 Score: 255.8 bits (652), Expect = 2.4e-68
Identity = 141/165 (85.45%), Postives = 148/165 (89.70%), Query Frame = 0


Query: 1   MVLKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 60
           MVLKTELCRFSG KIYPG+GIRF+R+DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQ
Sbjct: 1   MVLKTELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQ 60

Query: 61  HKKDIAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120
           HKKD AQEAVK+RRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 61  HKKDAAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 120

Query: 121 KTKDEKKAKKAEVLAKSQKAPGKGNVAK-GPASKGPKLGGGGGKR 165
           KTKDEKKAKK E  +K QK   K N  K   ASKGPK+GGGGGKR
Sbjct: 121 KTKDEKKAKKVEFASKQQKV--KANFPKAAAASKGPKVGGGGGKR 163

[Close]

BLAST of CSPI03G34010 vs. TAIR 10
Match: AT2G44860.1 (Ribosomal protein L24e family protein )

HSP 1 Score: 68.9 bits (167), Expect = 4.2e-12
Identity = 47/128 (36.72%), Postives = 71/128 (55.47%), Query Frame = 0


Query: 3   LKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHK 62
           ++ E C F  + IYPG GI+FVR D+++F F  SKC + F  +  P K+ WT  +R  H 
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 63  KDIAQEAV----KKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKER 122
           KD+ ++      KKR R  +  Y R++   TL  I+K      ++R  AREA  + I+ R
Sbjct: 61  KDMTKDTTFEFEKKRNRPER--YDRNVTENTLMAIKK----IAKIR-TAREA--KHIENR 119

Query: 123 IKKTKDEK 127
           +K  K +K
Sbjct: 121 LKPNKQKK 119

[Close]

BLAST of CSPI03G34010 vs. TAIR 10
Match: AT2G44860.2 (Ribosomal protein L24e family protein )

HSP 1 Score: 68.9 bits (167), Expect = 4.2e-12
Identity = 47/128 (36.72%), Postives = 71/128 (55.47%), Query Frame = 0


Query: 3   LKTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHK 62
           ++ E C F  + IYPG GI+FVR D+++F F  SKC + F  +  P K+ WT  +R  H 
Sbjct: 1   MRLEKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHG 60

Query: 63  KDIAQEAV----KKRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKER 122
           KD+ ++      KKR R  +  Y R++   TL  I+K      ++R  AREA  + I+ R
Sbjct: 61  KDMTKDTTFEFEKKRNRPER--YDRNVTENTLMAIKK----IAKIR-TAREA--KHIENR 119

Query: 123 IKKTKDEK 127
           +K  K +K
Sbjct: 121 LKPNKQKK 119

The following BLAST results are available for this feature:

BLAST of CSPI03G34010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65743	5.5e-73	89.57	60S ribosomal protein L24 OS=Cicer arietinum OX=3827 GN=RPL24 PE=2 SV=1	[more]
Q9FUL4	1.5e-70	91.25	60S ribosomal protein L24 OS=Prunus avium OX=42229 GN=RPL24 PE=2 SV=1	[more]
P50888	1.8e-68	87.20	60S ribosomal protein L24 OS=Hordeum vulgare OX=4513 GN=RPL24 PE=2 SV=1	[more]
Q42347	4.1e-68	84.15	60S ribosomal protein L24-1 OS=Arabidopsis thaliana OX=3702 GN=RPL24A PE=1 SV=2	[more]
P38666	3.4e-67	85.45	60S ribosomal protein L24-2 OS=Arabidopsis thaliana OX=3702 GN=RPL24B PE=1 SV=2	[more]

BLAST of CSPI03G34010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGG6	2.4e-79	100.00	TRASH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G748210 PE=3 ...	[more]
A0A1S3B6I5	6.9e-79	99.39	60S ribosomal protein L24-like OS=Cucumis melo OX=3656 GN=LOC103486557 PE=3 SV=1	[more]
A0A6J1J6E9	1.0e-77	96.95	60S ribosomal protein L24-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1FAB6	1.0e-77	96.95	60S ribosomal protein L24-like OS=Cucurbita moschata OX=3662 GN=LOC111442264 PE=...	[more]
A0A5A7TPC8	5.0e-77	97.55	60S ribosomal protein L24-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]

BLAST of CSPI03G34010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004137862.1	4.9e-79	100.00	60S ribosomal protein L24 [Cucumis sativus] >KGN59041.1 hypothetical protein Csa...	[more]
XP_008442779.1	1.4e-78	99.39	PREDICTED: 60S ribosomal protein L24-like [Cucumis melo]	[more]
XP_038903235.1	3.2e-78	98.78	60S ribosomal protein L24-like [Benincasa hispida]	[more]
XP_022935353.1	2.1e-77	96.95	60S ribosomal protein L24-like [Cucurbita moschata] >XP_022983124.1 60S ribosoma...	[more]
KAG6580651.1	6.0e-77	96.34	60S ribosomal protein L24, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CSPI03G34010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G36620.1	2.9e-69	84.15	ribosomal protein L24	[more]
AT3G53020.1	2.4e-68	85.45	Ribosomal protein L24e family protein	[more]
AT2G44860.1	4.2e-12	36.72	Ribosomal protein L24e family protein	[more]
AT2G44860.2	4.2e-12	36.72	Ribosomal protein L24e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 112..136
None	No IPR available	GENE3D	6.10.250.1270		coord: 69..139 e-value: 7.6E-22 score: 79.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..136
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..164
None	No IPR available	PANTHER	PTHR10792:SF37	60S RIBOSOMAL PROTEIN L24	coord: 1..164
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 6..58
IPR011017	TRASH domain	SMART	SM00746	4TRASH	coord: 8..46 e-value: 4.1E-4 score: 29.7
IPR038630	Ribosomal protein L24e/L24 superfamily	GENE3D	2.30.170.20	Ribosomal protein L24e	coord: 3..64 e-value: 9.4E-34 score: 117.5
IPR000988	Ribosomal protein L24e-related	PFAM	PF01246	Ribosomal_L24e	coord: 3..67 e-value: 8.1E-29 score: 99.7
IPR000988	Ribosomal protein L24e-related	PANTHER	PTHR10792	60S RIBOSOMAL PROTEIN L24	coord: 1..164
IPR000988	Ribosomal protein L24e-related	CDD	cd00472	Ribosomal_L24e_L24	coord: 3..56 e-value: 3.90298E-20 score: 76.8422
IPR023442	Ribosomal protein L24e, conserved site	PROSITE	PS01073	RIBOSOMAL_L24E	coord: 10..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G34010.1	CSPI03G34010.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome