CSPI03G30590 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G30590
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	B3 domain-containing transcription repressor VAL2
Location	Chr3: 27997665 .. 27998414 (+)
RNA-Seq Expression	CSPI03G30590
Synteny	CSPI03G30590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAAGCAGGCATGCAGAAAAGAAGATGATTGATGATGTGTCCAAGCATTTTGAAGAAGTAGTCATTTGCATGTTATTGTAAGTATAAACACAACTAAAATGTTCGTAGTAGTCAAGTATTGTTTAGTGATCATTTAGTTTTAGCTATGCATAATCCACGTTTATTTCACTTTTTTAGATAAGAAAGTACAAGTGGATACCCCAAAAAATTATTGTAAAATTCGATATTATTATGTTGCAAATAATTAAGAGTTGGGGTTAGATGGATTAGAAAAAAAAATGTTTTTTTTTATAAATATATTAATTCCAGTGTAAACTCCGATTTTAAAAGTTATTTGGAGTCCAAAATGACTTAAAATTAAAGATAAAAAATATATAATTGAGCAAACGTGCACCATACATCTTTTCTTTCTACTTCTGATGTCATGCGAAGCACTAAGGAACTATTTTATTTGTTAAATATTTTAACTATTAGGCCTTTTCTTTTCTTCTGTAGACCCTCCCACGCTCCCCACCACCAACTACTGCACCCAACCCACCCCCGTCAGACGCCGCTCCTTCACCACGAAGTCTCTGCGGCTGCCAAACGAACCATTTCTGCGACGGTACTGGTGATCCACAACAATCTCAGACCTCCCGCGTTACGAGAACCACCAGCACGACGACCTCAGATCTGAGGTGGCTCCAGCCAGCAACGACGCCCGCCGCATTTCTCGACTACCCTCAGCCCGAACTAATTTGGATCCCT

mRNA sequence

ATGAGAAGCAGGCATGCAGAAAAGAAGATGATTGATGATGTGTCCAAGCATTTTGAAGAAACCCTCCCACGCTCCCCACCACCAACTACTGCACCCAACCCACCCCCGTCAGACGCCGCTCCTTCACCACGAAGTCTCTGCGGCTGCCAAACGAACCATTTCTGCGACGGTACTGGTGATCCACAACAATCTCAGACCTCCCGCGTTACGAGAACCACCAGCACGACGACCTCAGATCTGAGGTGGCTCCAGCCAGCAACGACGCCCGCCGCATTTCTCGACTACCCTCAGCCCGAACTAATTTGGATCCCT

Coding sequence (CDS)

ATGAGAAGCAGGCATGCAGAAAAGAAGATGATTGATGATGTGTCCAAGCATTTTGAAGAAACCCTCCCACGCTCCCCACCACCAACTACTGCACCCAACCCACCCCCGTCAGACGCCGCTCCTTCACCACGAAGTCTCTGCGGCTGCCAAACGAACCATTTCTGCGACGGTACTGGTGATCCACAACAATCTCAGACCTCCCGCGTTACGAGAACCACCAGCACGACGACCTCAGATCTGAGGTGGCTCCAGCCAGCAACGACGCCCGCCGCATTTCTCGACTACCCTCAGCCCGAACTAATTTGGATCCCT

Protein sequence

MRSRHAEKKMIDDVSKHFEETLPRSPPPTTAPNPPPSDAAPSPRSLCGCQTNHFCDGTGDPQQSQTSRVTRTTSTTTSDLRWLQPATTPAAFLDYPQPELIWIP

Homology

[Close]

BLAST of CSPI03G30590 vs. ExPASy TrEMBL
Match: A0A0A0LA20 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G728050 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 5.9e-52
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MRSRHAEKKMIDDVSKHFEETLPRSPPPTTAPNPPPSDAAPSPRSLCGCQTNHFCDGTGD 60
           MRSRHAEKKMIDDVSKHFEETLPRSPPPTTAPNPPPSDAAPSPRSLCGCQTNHFCDGTGD
Sbjct: 1   MRSRHAEKKMIDDVSKHFEETLPRSPPPTTAPNPPPSDAAPSPRSLCGCQTNHFCDGTGD 60

Query: 61  PQQSQTSRVTRTTSTTTSDLRWLQPATTPAAFLDYPQPELIWIP 105
           PQQSQTSRVTRTTSTTTSDLRWLQPATTPAAFLDYPQPELIWIP
Sbjct: 61  PQQSQTSRVTRTTSTTTSDLRWLQPATTPAAFLDYPQPELIWIP 104

[Close]

BLAST of CSPI03G30590 vs. ExPASy TrEMBL
Match: A0A5D3DMR2 (B3 domain-containing transcription repressor VAL2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00180 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 8.1e-09
Identity = 42/61 (68.85%), Postives = 45/61 (73.77%), Query Frame = 0


Query: 27  PPTT--APNPPPSDAAPSPRSLCGCQTNHFCDGTGDPQ----QSQTSRVTRTTSTTTSDL 82
           PPTT     P PSDAAP+ RSL GCQT+H  D TGDPQ    QSQTSRVTRT +TTTSDL
Sbjct: 52  PPTTNYCTQPTPSDAAPARRSLTGCQTSHISDATGDPQAPPTQSQTSRVTRTDTTTTSDL 111

[Close]

BLAST of CSPI03G30590 vs. ExPASy TrEMBL
Match: A0A5A7TSM7 (B3 domain-containing transcription repressor VAL2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G005900 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.2e-07
Identity = 47/90 (52.22%), Postives = 53/90 (58.89%), Query Frame = 0


Query: 10  MIDDVSKHFEETL------------PRSPPPTT--APNPPPSDAAPSPRSLCGCQTNHFC 69
           +IDDV K  +E +                PPTT     P PSDAAP+ RSL GCQT+H  
Sbjct: 40  LIDDVFKRCQEVVICICLLFYFIFFSFVDPPTTNYCTQPTPSDAAPARRSLTGCQTSHIS 99

Query: 70  DGTGDPQ----QSQTSRVTRTTSTTTSDLR 82
           D TGDPQ    QSQTS VTRT +TTTSDLR
Sbjct: 100 DATGDPQAPPTQSQTSCVTRTDTTTTSDLR 129

[Close]

BLAST of CSPI03G30590 vs. NCBI nr
Match: KGN58688.1 (hypothetical protein Csa_001621 [Cucumis sativus])

HSP 1 Score: 213.0 bits (541), Expect = 1.2e-51
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MRSRHAEKKMIDDVSKHFEETLPRSPPPTTAPNPPPSDAAPSPRSLCGCQTNHFCDGTGD 60
           MRSRHAEKKMIDDVSKHFEETLPRSPPPTTAPNPPPSDAAPSPRSLCGCQTNHFCDGTGD
Sbjct: 1   MRSRHAEKKMIDDVSKHFEETLPRSPPPTTAPNPPPSDAAPSPRSLCGCQTNHFCDGTGD 60

Query: 61  PQQSQTSRVTRTTSTTTSDLRWLQPATTPAAFLDYPQPELIWIP 105
           PQQSQTSRVTRTTSTTTSDLRWLQPATTPAAFLDYPQPELIWIP
Sbjct: 61  PQQSQTSRVTRTTSTTTSDLRWLQPATTPAAFLDYPQPELIWIP 104

[Close]

BLAST of CSPI03G30590 vs. NCBI nr
Match: TYK24905.1 (B3 domain-containing transcription repressor VAL2 [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 1.7e-08
Identity = 42/61 (68.85%), Postives = 45/61 (73.77%), Query Frame = 0


Query: 27  PPTT--APNPPPSDAAPSPRSLCGCQTNHFCDGTGDPQ----QSQTSRVTRTTSTTTSDL 82
           PPTT     P PSDAAP+ RSL GCQT+H  D TGDPQ    QSQTSRVTRT +TTTSDL
Sbjct: 52  PPTTNYCTQPTPSDAAPARRSLTGCQTSHISDATGDPQAPPTQSQTSRVTRTDTTTTSDL 111

[Close]

BLAST of CSPI03G30590 vs. NCBI nr
Match: KAA0044229.1 (B3 domain-containing transcription repressor VAL2 [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 2.4e-07
Identity = 47/90 (52.22%), Postives = 53/90 (58.89%), Query Frame = 0


Query: 10  MIDDVSKHFEETL------------PRSPPPTT--APNPPPSDAAPSPRSLCGCQTNHFC 69
           +IDDV K  +E +                PPTT     P PSDAAP+ RSL GCQT+H  
Sbjct: 40  LIDDVFKRCQEVVICICLLFYFIFFSFVDPPTTNYCTQPTPSDAAPARRSLTGCQTSHIS 99

Query: 70  DGTGDPQ----QSQTSRVTRTTSTTTSDLR 82
           D TGDPQ    QSQTS VTRT +TTTSDLR
Sbjct: 100 DATGDPQAPPTQSQTSCVTRTDTTTTSDLR 129

The following BLAST results are available for this feature:

BLAST of CSPI03G30590 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G30590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LA20	5.9e-52	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G728050 PE=4 SV=1	[more]
A0A5D3DMR2	8.1e-09	68.85	B3 domain-containing transcription repressor VAL2 OS=Cucumis melo var. makuwa OX...	[more]
A0A5A7TSM7	1.2e-07	52.22	B3 domain-containing transcription repressor VAL2 OS=Cucumis melo var. makuwa OX...	[more]

BLAST of CSPI03G30590 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58688.1	1.2e-51	100.00	hypothetical protein Csa_001621 [Cucumis sativus]	[more]
TYK24905.1	1.7e-08	68.85	B3 domain-containing transcription repressor VAL2 [Cucumis melo var. makuwa]	[more]
KAA0044229.1	2.4e-07	52.22	B3 domain-containing transcription repressor VAL2 [Cucumis melo var. makuwa]	[more]

BLAST of CSPI03G30590 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..41
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 44..78
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G30590.1	CSPI03G30590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0046872	metal ion binding