CSPI03G30260 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G30260
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr3: 27660696 .. 27661976 (+)
RNA-Seq Expression	CSPI03G30260
Synteny	CSPI03G30260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTATGGCTATGGCTATTCCCTAGTGAAGAAAAAGGGTTGGTGAATTAGGGGTTTGGTTTGATATTAGGGTTGTGCCTAGCTGAGATCATATCATATCACAAAAATGGGAGTATATGCATGCCTCCTAATTTCCCTCTTATTAATTCTTCAAACTGTTTGGATTTCATCCCTTTCTAATGCTTCCAATAATTCTTTTCCATATGAATCTCTTTCCAACCCTCCTCTTCAAACCCATCATCTTCATCAACAACTACGCTTGGGTGAGATTATATTTATTCAAAACCTCTTTATCTTTTGTTTTTGTTTATTGATTTTTAAATTGTGTTTACGAGTACCCTCAAATTATTTAAATTAATCTTAGAAATGTGTTGTGTTTGTTTTGAAATATATAGACAGAGTACTCCTCTCTATCTTTATCTTGACGAAAGATTCATATTTTGTTTTGGTTAAAATATCATTTTGATTATGTATAATATTAGTTCATCAACTTTTAACATTAATCTCTATCTCATGAGTTTAAAAAAAAATGGTGTTTATTAATATTTTCTTTATAAATCAATCAAATATATGTGCATAATGTGTCTTTTCCATTACAGTTATTATTGAACTAATTTTGATAAGATTTCTAGAAAATAAAATGATCAAAAATCGATAATTAAAAAATACACAAGGTCATGTACCTATACAAAATAACATATATATGGAATTTGATATTATTCTTTATTTCACCATATACTTCTTTGACTTTGATCCTAACTTTATCATAATTTTCTTTTCCATTGTTGAGTGAAAAACAATTTTTTATAGAGGTTTGAAATTAAGGTTTTCATTCAATAACTTTTTTTTAGAAAGTTGTGAAAATTAAAGGAAAATTATGTCAAACATTTACTTTTGGTTTTTAAGATATGGAATTGATAAATGATGAGGAATCGTTAATTATTTATTGTCTTTTGGTTTGGAGTGAAAGGAGGGGGTGGCAAAGAAGAGAATAATAAGACGGCCGCGGAGAGTTGGACTGTTTCAAAGGCTAAAGGGGGCGGAAGGTCCGGCGCCGGCGGGGCAGGAGCCAACAACCACCGGCCGGGAAAGGCGAAGAACGCAGCTTCCACTTTGATGAACTCAAATAACAACATAATAATAATTACCACTCTCCTCCTCTCTTCCTTTTTATACTTGTTTTAAATCTTCTTTTTTTCATTCATTGAAATATGGAATAAGATCAAAACCCTATTTATATACACACATACATCTTTTTGTTTGAATAAATTTTTGTTATCGAC

mRNA sequence

GCTATGGCTATGGCTATTCCCTAGTGAAGAAAAAGGGTTGGTGAATTAGGGGTTTGGTTTGATATTAGGGTTGTGCCTAGCTGAGATCATATCATATCACAAAAATGGGAGTATATGCATGCCTCCTAATTTCCCTCTTATTAATTCTTCAAACTGTTTGGATTTCATCCCTTTCTAATGCTTCCAATAATTCTTTTCCATATGAATCTCTTTCCAACCCTCCTCTTCAAACCCATCATCTTCATCAACAACTACGCTTGGTGAAAGGAGGGGGTGGCAAAGAAGAGAATAATAAGACGGCCGCGGAGAGTTGGACTGTTTCAAAGGCTAAAGGGGGCGGAAGGTCCGGCGCCGGCGGGGCAGGAGCCAACAACCACCGGCCGGGAAAGGCGAAGAACGCAGCTTCCACTTTGATGAACTCAAATAACAACATAATAATAATTACCACTCTCCTCCTCTCTTCCTTTTTATACTTGTTTTAAATCTTCTTTTTTTCATTCATTGAAATATGGAATAAGATCAAAACCCTATTTATATACACACATACATCTTTTTGTTTGAATAAATTTTTGTTATCGAC

Coding sequence (CDS)

ATGGGAGTATATGCATGCCTCCTAATTTCCCTCTTATTAATTCTTCAAACTGTTTGGATTTCATCCCTTTCTAATGCTTCCAATAATTCTTTTCCATATGAATCTCTTTCCAACCCTCCTCTTCAAACCCATCATCTTCATCAACAACTACGCTTGGTGAAAGGAGGGGGTGGCAAAGAAGAGAATAATAAGACGGCCGCGGAGAGTTGGACTGTTTCAAAGGCTAAAGGGGGCGGAAGGTCCGGCGCCGGCGGGGCAGGAGCCAACAACCACCGGCCGGGAAAGGCGAAGAACGCAGCTTCCACTTTGATGAACTCAAATAACAACATAATAATAATTACCACTCTCCTCCTCTCTTCCTTTTTATACTTGTTTTAA

Protein sequence

MGVYACLLISLLLILQTVWISSLSNASNNSFPYESLSNPPLQTHHLHQQLRLVKGGGGKEENNKTAAESWTVSKAKGGGRSGAGGAGANNHRPGKAKNAASTLMNSNNNIIIITTLLLSSFLYLF*

Homology

[Close]

BLAST of CSPI03G30260 vs. ExPASy TrEMBL
Match: A0A0A0LCI5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G710765 PE=4 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 4.4e-57
Identity = 124/125 (99.20%), Postives = 124/125 (99.20%), Query Frame = 0


Query: 1   MGVYACLLISLLLILQTVWISSLSNASNNSFPYESLSNPPLQTHHLHQQLRLVKGGGGKE 60
           MGVYACLLISLLLILQTVWISSLSNASNNSFPYESLSNPPLQTHHLHQQ RLVKGGGGKE
Sbjct: 1   MGVYACLLISLLLILQTVWISSLSNASNNSFPYESLSNPPLQTHHLHQQPRLVKGGGGKE 60

Query: 61  ENNKTAAESWTVSKAKGGGRSGAGGAGANNHRPGKAKNAASTLMNSNNNIIIITTLLLSS 120
           ENNKTAAESWTVSKAKGGGRSGAGGAGANNHRPGKAKNAASTLMNSNNNIIIITTLLLSS
Sbjct: 61  ENNKTAAESWTVSKAKGGGRSGAGGAGANNHRPGKAKNAASTLMNSNNNIIIITTLLLSS 120

Query: 121 FLYLF 126
           FLYLF
Sbjct: 121 FLYLF 125

[Close]

BLAST of CSPI03G30260 vs. NCBI nr
Match: KGN58897.2 (hypothetical protein Csa_001334 [Cucumis sativus])

HSP 1 Score: 221.9 bits (564), Expect = 3.2e-54
Identity = 122/125 (97.60%), Postives = 122/125 (97.60%), Query Frame = 0


Query: 1   MGVYACLLISLLLILQTVWISSLSNASNNSFPYESLSNPPLQTHHLHQQLRLVKGGGGKE 60
           MGVYACLLISLLLILQTVWISSLSNASNNSFPYESLSNPPLQTHHLHQQ RL  GGGGKE
Sbjct: 1   MGVYACLLISLLLILQTVWISSLSNASNNSFPYESLSNPPLQTHHLHQQPRL--GGGGKE 60

Query: 61  ENNKTAAESWTVSKAKGGGRSGAGGAGANNHRPGKAKNAASTLMNSNNNIIIITTLLLSS 120
           ENNKTAAESWTVSKAKGGGRSGAGGAGANNHRPGKAKNAASTLMNSNNNIIIITTLLLSS
Sbjct: 61  ENNKTAAESWTVSKAKGGGRSGAGGAGANNHRPGKAKNAASTLMNSNNNIIIITTLLLSS 120

Query: 121 FLYLF 126
           FLYLF
Sbjct: 121 FLYLF 123

[Close]

BLAST of CSPI03G30260 vs. NCBI nr
Match: KAG6581619.1 (hypothetical protein SDJN03_21621, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 83.6 bits (205), Expect = 1.4e-12
Identity = 73/129 (56.59%), Postives = 82/129 (63.57%), Query Frame = 0


Query: 1   MGVYACLLISLLLILQTVWISSLSNA----SNNSFPYESLSNPPLQTHHLHQQLRLVKGG 60
           MGVYACLLISLLLI QT  ISSLSN     SN+SF     ++ PLQ HH   QL LV G 
Sbjct: 1   MGVYACLLISLLLIFQTHSISSLSNGSLPISNHSF-----NSQPLQHHH---QL-LVSGR 60

Query: 61  GGKEENNKTAAESWTVSKAKGGGRSGAGGAGANNHRPGKAKNAASTLMNSNNNIIIITTL 120
              EEN  T      V KAK GGRSG+ GAG NNHRPGKAKNAA++L   N    II  +
Sbjct: 61  DDGEENTTTV--KLVVLKAK-GGRSGSAGAGTNNHRPGKAKNAAASLFEFN----IIYFV 113

Query: 121 LLSSFLYLF 126
           L S+ L+LF
Sbjct: 121 LNSAGLFLF 113

The following BLAST results are available for this feature:

BLAST of CSPI03G30260 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G30260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCI5	4.4e-57	99.20	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G710765 PE=4 SV=1	[more]

BLAST of CSPI03G30260 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58897.2	3.2e-54	97.60	hypothetical protein Csa_001334 [Cucumis sativus]	[more]
KAG6581619.1	1.4e-12	56.59	hypothetical protein SDJN03_21621, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CSPI03G30260 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 55..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G30260.1	CSPI03G30260.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity