Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACGTCCATTCTCCCACACCGGACCAACGCCGGGTCAATCTTTTCCCGGTAATTCGTTGTAAAAACAACGATTCTCTCTTCCCCACAACAAGACCAAAGTCCATCCGTAAAATTCAAAAGCCCCGACAACGTCACGCGCCCCATCTCCTCCTCGTGATCCTCACGCGCCGCTACCTTCGTAACACGATCCGCCGTCAAGTCAACCGAACAATCAATATCTTCAATCACAATCACCGACCGGTTCGTCGTCTGAATAAGAAGCGAACGAAGCTCAGAATTATCAGAAACCTTCGTCAATTCCAAATCATACACATCGTAGCAGAGGAAATTCGCCATTGCCGCAATCAAGCTCGATTTCCCAGATCCAGGAGGTCCATAAAGCAGATACCCACGTTTCCAAGCACGGCCAACTCTACTATAAAACTCCCTCCCGGCGGCAAACGCCAT
mRNA sequence
ATGCACGTCCATTCTCCCACACCGGACCAACGCCGGGTCAATCTTTTCCCGGTAATTCGTTGTAAAAACAACGATTCTCTCTTCCCCACAACAAGACCAAAGTCCATCCGTAAAATTCAAAAGCCCCGACAACGTCACGCGCCCCATCTCCTCCTCGTGATCCTCACGCGCCGCTACCTTCGTAACACGATCCGCCGTCAAGTCAACCGAACAATCAATATCTTCAATCACAATCACCGACCGGTTCGTCGTCTGAATAAGAAGCGAACGAAGCTCAGAATTATCAGAAACCTTCGTCAATTCCAAATCATACACATCGTAGCAGAGGAAATTCGCCATTGCCGCAATCAAGCTCGATTTCCCAGATCCAGGAGGTCCATAAAGCAGATACCCACGTTTCCAAGCACGGCCAACTCTACTATAAAACTCCCTCCCGGCGGCAAACGCCAT
Coding sequence (CDS)
ATGCACGTCCATTCTCCCACACCGGACCAACGCCGGGTCAATCTTTTCCCGGTAATTCGTTGTAAAAACAACGATTCTCTCTTCCCCACAACAAGACCAAAGTCCATCCGTAAAATTCAAAAGCCCCGACAACGTCACGCGCCCCATCTCCTCCTCGTGATCCTCACGCGCCGCTACCTTCGTAACACGATCCGCCGTCAAGTCAACCGAACAATCAATATCTTCAATCACAATCACCGACCGGTTCGTCGTCTGAATAAGAAGCGAACGAAGCTCAGAATTATCAGAAACCTTCGTCAATTCCAAATCATACACATCGTAGCAGAGGAAATTCGCCATTGCCGCAATCAAGCTCGATTTCCCAGATCCAGGAGGTCCATAAAGCAGATACCCACGTTTCCAAGCACGGCCAACTCTACTATAAAACTCCCTCCCGGCGGCAAACGCCAT
Protein sequence
MHVHSPTPDQRRVNLFPVIRCKNNDSLFPTTRPKSIRKIQKPRQRHAPHLLLVILTRRYLRNTIRRQVNRTINIFNHNHRPVRRLNKKRTKLRIIRNLRQFQIIHIVAEEIRHCRNQARFPRSRRSIKQIPTFPSTANSTIKLPPGGKRH
Homology
BLAST of CSPI03G30100 vs. ExPASy TrEMBL
Match:
A0A0A0L9K8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G707670 PE=4 SV=1)
HSP 1 Score: 300.1 bits (767), Expect = 5.3e-78
Identity = 149/150 (99.33%), Postives = 150/150 (100.00%), Query Frame = 0
Query: 1 MHVHSPTPDQRRVNLFPVIRCKNNDSLFPTTRPKSIRKIQKPRQRHAPHLLLVILTRRYL 60
MHVHSPTPDQRRVNLFPVIRCKNNDSLFPTTRPKSIRK+QKPRQRHAPHLLLVILTRRYL
Sbjct: 1 MHVHSPTPDQRRVNLFPVIRCKNNDSLFPTTRPKSIRKVQKPRQRHAPHLLLVILTRRYL 60
Query: 61 RNTIRRQVNRTINIFNHNHRPVRRLNKKRTKLRIIRNLRQFQIIHIVAEEIRHCRNQARF 120
RNTIRRQVNRTINIFNHNHRPVRRLNKKRTKLRIIRNLRQFQIIHIVAEEIRHCRNQARF
Sbjct: 61 RNTIRRQVNRTINIFNHNHRPVRRLNKKRTKLRIIRNLRQFQIIHIVAEEIRHCRNQARF 120
Query: 121 PRSRRSIKQIPTFPSTANSTIKLPPGGKRH 151
PRSRRSIKQIPTFPSTANSTIKLPPGGKRH
Sbjct: 121 PRSRRSIKQIPTFPSTANSTIKLPPGGKRH 150
BLAST of CSPI03G30100 vs. ExPASy TrEMBL
Match:
T1MIG6 (Uncharacterized protein OS=Triticum urartu OX=4572 PE=4 SV=1)
HSP 1 Score: 79.3 bits (194), Expect = 1.5e-11
Identity = 43/168 (25.60%), Postives = 93/168 (55.36%), Query Frame = 0
Query: 1 MHVHSPTPDQRRVNLFPVIRCKNNDSLFPTTRPKSIRKIQKPRQRHAPHLL-----LVIL 60
+HVH P P QRRV+ V+R +++D+L RP+++ ++++P + H P ++ +V+
Sbjct: 57 VHVHPPRPQQRRVDAVHVVRREHDDALLAAARPQAVGEVEQPGEGHLPPVVVGAHDVVVR 116
Query: 61 TRRYL--------------RNTIRRQVNRTINIFNHNHRPVRRLNKKRTKLRIIRNLRQF 120
R + + + +V +++ + N R V RL+++R ++ + + +
Sbjct: 117 VGRVIGGGRAASLVPPRGGQAAVAGEVEGAVDVLDDNERAVGRLDEERAEVGVGGDAGEL 176
Query: 121 QIIHIVAEEIRHCRNQARFPRSRRSIKQIPTFPSTANSTIKLPPGGKR 150
++ H+V E +RH +Q R +RR+++++P P + ++LPP G+R
Sbjct: 177 EVEHVVPEVVRHGGDQRRLAGARRAVEEVPALPRPPSPAVELPPVGER 224
BLAST of CSPI03G30100 vs. ExPASy TrEMBL
Match:
A0A5A7P5A9 (DNA-directed RNA polymerase subunit beta OS=Striga asiatica OX=4170 GN=STAS_03714 PE=4 SV=1)
HSP 1 Score: 68.6 bits (166), Expect = 2.6e-08
Identity = 49/164 (29.88%), Postives = 82/164 (50.00%), Query Frame = 0
Query: 3 VHSPTPDQRRVNLFPVIRCKNNDSLFPTTRPKSIRKIQKPRQRHAPH------------- 62
VH P+PD+ V L V+R +NN+ +RPK + K+QKP Q H
Sbjct: 99 VHPPSPDKCWVELLHVVRRENNNPFPTASRPKPVNKVQKPGQCHLARFLPTLLQFFQFLL 158
Query: 63 --------LLLVILTRRY----LRNTIRRQVNRTINIFNHNHRPVRRLNKKRTKLRIIRN 122
LLLVI+ + L ++ R++ +++ N+N R RR++KK +L ++ +
Sbjct: 159 QFLSLVLILLLVIVFFVFLLILLLLSLSREIEGAVDVLNNNDRLSRRVDKKLPELGVVFD 218
Query: 123 LRQFQIIHIVAEEIRHCRNQARFPRSRRSIKQIPTFPSTANSTI 142
Q +I+H+V E+I H R RR +++ FPS ++ I
Sbjct: 219 RSQLKIVHVVLEKISHGGYHGRLAGPRRPEQEVSPFPSLSDFLI 262
BLAST of CSPI03G30100 vs. ExPASy TrEMBL
Match:
A0A371I2K5 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_06367 PE=4 SV=1)
HSP 1 Score: 68.2 bits (165), Expect = 3.4e-08
Identity = 48/164 (29.27%), Postives = 81/164 (49.39%), Query Frame = 0
Query: 1 MHVHSPTPDQRRVNLFPVIRCKNNDSLFPTTRPKSIRKIQKPRQRH-------------- 60
MH+HSPTP Q RV L V+ C++ + L P P++I KIQ+ RQR
Sbjct: 1 MHIHSPTPQQSRVKLLNVVGCEDENPLTPAAGPQAISKIQQARQRDRVPTLLAAAAAAAA 60
Query: 61 APHLLLVILTRRYLRNTI--------RRQVNRTINIFNHNHRPVRRLNKKRTKLRIIRNL 120
+ HL +++ R+ + +V+ INI + ++K + ++ +L
Sbjct: 61 SAHLRIIVTPGSRNRSVVVVVIVVGPVGEVDGAINILDDYDGFGAGFHEKLPEFGVVVDL 120
Query: 121 RQFQIIHIVAEEIRHCRNQARFPRSRRSIKQIPTFPSTANSTIK 143
Q QI++I+AE I H N A F R+I+++ FP ++ +K
Sbjct: 121 GQLQIVNIIAEVIGHSSNHAGFTSPGRAIEKVTPFPGPSSFMVK 164
BLAST of CSPI03G30100 vs. ExPASy TrEMBL
Match:
A0A5A7P603 (DEAD/DEAH box helicase OS=Striga asiatica OX=4170 GN=STAS_03733 PE=4 SV=1)
HSP 1 Score: 66.2 bits (160), Expect = 1.3e-07
Identity = 34/80 (42.50%), Postives = 52/80 (65.00%), Query Frame = 0
Query: 66 RQVNRTINIFNHNHRPVRRLNKKRTKLRIIRNLRQFQIIHIVAEEIRHCRNQARFPRSRR 125
RQ+NRT+NI N+ +RP+ ++ ++RI N+RQ QII+I E +RH QARFP RR
Sbjct: 48 RQLNRTVNILNYKYRPIPSPQQQSPQIRIPLNIRQLQIINIKPEIVRHRSYQARFPSPRR 107
Query: 126 SIKQIPTFPSTANSTIKLPP 146
+KQ+ P A+ +++ P
Sbjct: 108 PVKQVTPLPDPAHFPVEILP 127
BLAST of CSPI03G30100 vs. NCBI nr
Match:
GER27960.1 (DNA-directed RNA polymerase subunit beta' [Striga asiatica])
HSP 1 Score: 68.6 bits (166), Expect = 5.4e-08
Identity = 49/164 (29.88%), Postives = 82/164 (50.00%), Query Frame = 0
Query: 3 VHSPTPDQRRVNLFPVIRCKNNDSLFPTTRPKSIRKIQKPRQRHAPH------------- 62
VH P+PD+ V L V+R +NN+ +RPK + K+QKP Q H
Sbjct: 99 VHPPSPDKCWVELLHVVRRENNNPFPTASRPKPVNKVQKPGQCHLARFLPTLLQFFQFLL 158
Query: 63 --------LLLVILTRRY----LRNTIRRQVNRTINIFNHNHRPVRRLNKKRTKLRIIRN 122
LLLVI+ + L ++ R++ +++ N+N R RR++KK +L ++ +
Sbjct: 159 QFLSLVLILLLVIVFFVFLLILLLLSLSREIEGAVDVLNNNDRLSRRVDKKLPELGVVFD 218
Query: 123 LRQFQIIHIVAEEIRHCRNQARFPRSRRSIKQIPTFPSTANSTI 142
Q +I+H+V E+I H R RR +++ FPS ++ I
Sbjct: 219 RSQLKIVHVVLEKISHGGYHGRLAGPRRPEQEVSPFPSLSDFLI 262
BLAST of CSPI03G30100 vs. NCBI nr
Match:
RDY09270.1 (hypothetical protein CR513_06367, partial [Mucuna pruriens])
HSP 1 Score: 68.2 bits (165), Expect = 7.0e-08
Identity = 48/164 (29.27%), Postives = 81/164 (49.39%), Query Frame = 0
Query: 1 MHVHSPTPDQRRVNLFPVIRCKNNDSLFPTTRPKSIRKIQKPRQRH-------------- 60
MH+HSPTP Q RV L V+ C++ + L P P++I KIQ+ RQR
Sbjct: 1 MHIHSPTPQQSRVKLLNVVGCEDENPLTPAAGPQAISKIQQARQRDRVPTLLAAAAAAAA 60
Query: 61 APHLLLVILTRRYLRNTI--------RRQVNRTINIFNHNHRPVRRLNKKRTKLRIIRNL 120
+ HL +++ R+ + +V+ INI + ++K + ++ +L
Sbjct: 61 SAHLRIIVTPGSRNRSVVVVVIVVGPVGEVDGAINILDDYDGFGAGFHEKLPEFGVVVDL 120
Query: 121 RQFQIIHIVAEEIRHCRNQARFPRSRRSIKQIPTFPSTANSTIK 143
Q QI++I+AE I H N A F R+I+++ FP ++ +K
Sbjct: 121 GQLQIVNIIAEVIGHSSNHAGFTSPGRAIEKVTPFPGPSSFMVK 164
BLAST of CSPI03G30100 vs. NCBI nr
Match:
GER27984.1 (DEAD/DEAH box helicase [Striga asiatica])
HSP 1 Score: 66.2 bits (160), Expect = 2.7e-07
Identity = 34/80 (42.50%), Postives = 52/80 (65.00%), Query Frame = 0
Query: 66 RQVNRTINIFNHNHRPVRRLNKKRTKLRIIRNLRQFQIIHIVAEEIRHCRNQARFPRSRR 125
RQ+NRT+NI N+ +RP+ ++ ++RI N+RQ QII+I E +RH QARFP RR
Sbjct: 48 RQLNRTVNILNYKYRPIPSPQQQSPQIRIPLNIRQLQIINIKPEIVRHRSYQARFPSPRR 107
Query: 126 SIKQIPTFPSTANSTIKLPP 146
+KQ+ P A+ +++ P
Sbjct: 108 PVKQVTPLPDPAHFPVEILP 127
BLAST of CSPI03G30100 vs. NCBI nr
Match:
TVT97196.1 (hypothetical protein EJB05_57568, partial [Eragrostis curvula])
HSP 1 Score: 59.7 bits (143), Expect = 2.5e-05
Identity = 41/145 (28.28%), Postives = 66/145 (45.52%), Query Frame = 0
Query: 1 MHVHSPTPDQRRVNLFPVIRCKNNDSLFPTTRPKSIRKIQKPRQRHAPHLLLVILTRRYL 60
+HVH Q V PVIR +++D L PT RP+ I
Sbjct: 134 VHVHPARTQQCWVQPLPVIRGEDDDPLLPTCRPQPI------------------------ 193
Query: 61 RNTIRRQVNRTINIFNHNHRPVRRLNKKRTKLRIIRNLRQFQIIHIVAEEIRHCRNQARF 120
+VN +N+FN+ V +KK ++R+ +L Q +I+++ E I HC ++A
Sbjct: 194 -----NEVNAAVNVFNNKDGSVAHTDKKSPEVRVAFDLGQLKIVYVKLEVIGHCCDEAGL 249
Query: 121 PRSRRSIKQIPTFPSTANSTIKLPP 146
SRR I+Q+ P A+ + + P
Sbjct: 254 AGSRRPIQQVSPLPCPADPHVVVLP 249
BLAST of CSPI03G30100 vs. NCBI nr
Match:
KAG6547107.1 (hypothetical protein Mapa_011358 [Marchantia paleacea])
HSP 1 Score: 58.5 bits (140), Expect = 5.6e-05
Identity = 40/155 (25.81%), Postives = 77/155 (49.68%), Query Frame = 0
Query: 1 MHVHSPTPDQRRVNLFPVIRCKNNDSLFPTTRPKSIRKIQKPRQRHAPHLLLVILTR--- 60
+HVH+ Q RV L ++ ++ D L RP+++ ++++PRQ LL + R
Sbjct: 184 VHVHAARAQQSRVQLLDIVGGEDEDPLGAAARPQAVHEVEQPRQSDLALLLAGGIGRGGI 243
Query: 61 ----RYLRNTIRRQVNRTINIFNHNHRPVRRLNKKRTKLRIIRNLRQFQIIHIVAEEIRH 120
L + RQV R +++ NH+ PV + ++ +L + +L Q Q++ +VA + +
Sbjct: 244 GRGALLLLLPLARQVQRAVDVLNHDDGPVAGVQQQLAQLDVGFDLGQLQVVDVVAHFVGN 303
Query: 121 CRNQARFPRSRRSIKQIPTFPSTANSTIKLPPGGK 149
+ A RR ++Q+ P A++ + GK
Sbjct: 304 GGDHAGLAGPRRPVQQVAPLPGLAHALVVSLVAGK 338
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0L9K8 | 5.3e-78 | 99.33 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G707670 PE=4 SV=1 | [more] |
T1MIG6 | 1.5e-11 | 25.60 | Uncharacterized protein OS=Triticum urartu OX=4572 PE=4 SV=1 | [more] |
A0A5A7P5A9 | 2.6e-08 | 29.88 | DNA-directed RNA polymerase subunit beta OS=Striga asiatica OX=4170 GN=STAS_0371... | [more] |
A0A371I2K5 | 3.4e-08 | 29.27 | Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_06367 P... | [more] |
A0A5A7P603 | 1.3e-07 | 42.50 | DEAD/DEAH box helicase OS=Striga asiatica OX=4170 GN=STAS_03733 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
GER27960.1 | 5.4e-08 | 29.88 | DNA-directed RNA polymerase subunit beta' [Striga asiatica] | [more] |
RDY09270.1 | 7.0e-08 | 29.27 | hypothetical protein CR513_06367, partial [Mucuna pruriens] | [more] |
GER27984.1 | 2.7e-07 | 42.50 | DEAD/DEAH box helicase [Striga asiatica] | [more] |
TVT97196.1 | 2.5e-05 | 28.28 | hypothetical protein EJB05_57568, partial [Eragrostis curvula] | [more] |
KAG6547107.1 | 5.6e-05 | 25.81 | hypothetical protein Mapa_011358 [Marchantia paleacea] | [more] |
Match Name | E-value | Identity | Description | |