CSPI03G29310 (gene) Cucumber (PI 183967) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTTCCTCCATACGCTTCACTCTCCGCCGCCACAACGTCAGGCACGATCAATCTCTCCAAAACCGAAACCCATCCAGGCTTCCACTTCCATCCGACGAACTTCCGTACAATATCCTCCATCTAATTAGGCGCCGTGTTATGGGGGAGGAAACGGTGATTCTGGAAGAAGATCCGGCGAGGAGAAGGGCGCAGGAGAAGGCGATTGAGAGGTTGACGATCAGCGAGAAAGATGATGGGTTGTTTGAGGGAGAAGAGTTGGGAGATTGTTGTATTTGTTGCGAAGAACTGAATGGAGGGGAGAAGAAGAAGGTTTGTAGAATCAAGTGCGGCCATGTCTATCATAGATCCTGTATACTCACTTGGGTTCGAACAAAACTTTCTTGTCCTTTGTGTAGAAGTAA ATGTCTTCCTCCATACGCTTCACTCTCCGCCGCCACAACGTCAGGCACGATCAATCTCTCCAAAACCGAAACCCATCCAGGCTTCCACTTCCATCCGACGAACTTCCGTACAATATCCTCCATCTAATTAGGCGCCGTGTTATGGGGGAGGAAACGGTGATTCTGGAAGAAGATCCGGCGAGGAGAAGGGCGCAGGAGAAGGCGATTGAGAGGTTGACGATCAGCGAGAAAGATGATGGGTTGTTTGAGGGAGAAGAGTTGGGAGATTGTTGTATTTGTTGCGAAGAACTGAATGGAGGGGAGAAGAAGAAGAAGTAA ATGTCTTCCTCCATACGCTTCACTCTCCGCCGCCACAACGTCAGGCACGATCAATCTCTCCAAAACCGAAACCCATCCAGGCTTCCACTTCCATCCGACGAACTTCCGTACAATATCCTCCATCTAATTAGGCGCCGTGTTATGGGGGAGGAAACGGTGATTCTGGAAGAAGATCCGGCGAGGAGAAGGGCGCAGGAGAAGGCGATTGAGAGGTTGACGATCAGCGAGAAAGATGATGGGTTGTTTGAGGGAGAAGAGTTGGGAGATTGTTGTATTTGTTGCGAAGAACTGAATGGAGGGGAGAAGAAGAAGAAGTAA MSSSIRFTLRRHNVRHDQSLQNRNPSRLPLPSDELPYNILHLIRRRVMGEETVILEEDPARRRAQEKAIERLTISEKDDGLFEGEELGDCCICCEELNGGEKKKK* Homology
BLAST of CSPI03G29310 vs. ExPASy TrEMBL
Match: A0A0A0LER3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G680620 PE=4 SV=1) HSP 1 Score: 211.8 bits (538), Expect = 1.3e-51 Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0
BLAST of CSPI03G29310 vs. ExPASy TrEMBL
Match: A0A5A7UAN0 (RING finger protein 165-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1856G00100 PE=4 SV=1) HSP 1 Score: 87.4 bits (215), Expect = 3.8e-14 Identity = 58/112 (51.79%), Postives = 68/112 (60.71%), Query Frame = 0
BLAST of CSPI03G29310 vs. ExPASy TrEMBL
Match: A0A5D3BYE9 (RING finger protein 165-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1856G00110 PE=4 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 3.6e-04 Identity = 33/72 (45.83%), Postives = 43/72 (59.72%), Query Frame = 0
BLAST of CSPI03G29310 vs. NCBI nr
Match: XP_031738983.1 (E3 ubiquitin-protein ligase RNF181 homolog [Cucumis sativus] >KAE8650921.1 hypothetical protein Csa_002242 [Cucumis sativus]) HSP 1 Score: 209.9 bits (533), Expect = 1.1e-50 Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0
BLAST of CSPI03G29310 vs. NCBI nr
Match: KAA0052772.1 (RING finger protein 165-like protein [Cucumis melo var. makuwa] >TYK04184.1 RING finger protein 165-like protein [Cucumis melo var. makuwa]) HSP 1 Score: 87.4 bits (215), Expect = 7.9e-14 Identity = 58/112 (51.79%), Postives = 68/112 (60.71%), Query Frame = 0
BLAST of CSPI03G29310 vs. NCBI nr
Match: XP_038905732.1 (E3 ubiquitin-protein ligase arkadia-A-like [Benincasa hispida]) HSP 1 Score: 72.4 bits (176), Expect = 2.6e-09 Identity = 40/60 (66.67%), Postives = 45/60 (75.00%), Query Frame = 0
BLAST of CSPI03G29310 vs. NCBI nr
Match: KAA0052771.1 (RING finger protein 165-like protein [Cucumis melo var. makuwa] >TYK04185.1 RING finger protein 165-like protein [Cucumis melo var. makuwa]) HSP 1 Score: 54.3 bits (129), Expect = 7.4e-04 Identity = 33/72 (45.83%), Postives = 43/72 (59.72%), Query Frame = 0
BLAST of CSPI03G29310 vs. NCBI nr
Match: XP_038876865.1 (putative RING-H2 finger protein ATL53 [Benincasa hispida]) HSP 1 Score: 54.3 bits (129), Expect = 7.4e-04 Identity = 28/60 (46.67%), Postives = 40/60 (66.67%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
|