CSPI03G29310 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G29310
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionRING finger protein 165-like protein
LocationChr3: 26894682 .. 26895085 (-)
RNA-Seq ExpressionCSPI03G29310
SyntenyCSPI03G29310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTCCTCCATACGCTTCACTCTCCGCCGCCACAACGTCAGGCACGATCAATCTCTCCAAAACCGAAACCCATCCAGGCTTCCACTTCCATCCGACGAACTTCCGTACAATATCCTCCATCTAATTAGGCGCCGTGTTATGGGGGAGGAAACGGTGATTCTGGAAGAAGATCCGGCGAGGAGAAGGGCGCAGGAGAAGGCGATTGAGAGGTTGACGATCAGCGAGAAAGATGATGGGTTGTTTGAGGGAGAAGAGTTGGGAGATTGTTGTATTTGTTGCGAAGAACTGAATGGAGGGGAGAAGAAGAAGGTTTGTAGAATCAAGTGCGGCCATGTCTATCATAGATCCTGTATACTCACTTGGGTTCGAACAAAACTTTCTTGTCCTTTGTGTAGAAGTAA

mRNA sequence

ATGTCTTCCTCCATACGCTTCACTCTCCGCCGCCACAACGTCAGGCACGATCAATCTCTCCAAAACCGAAACCCATCCAGGCTTCCACTTCCATCCGACGAACTTCCGTACAATATCCTCCATCTAATTAGGCGCCGTGTTATGGGGGAGGAAACGGTGATTCTGGAAGAAGATCCGGCGAGGAGAAGGGCGCAGGAGAAGGCGATTGAGAGGTTGACGATCAGCGAGAAAGATGATGGGTTGTTTGAGGGAGAAGAGTTGGGAGATTGTTGTATTTGTTGCGAAGAACTGAATGGAGGGGAGAAGAAGAAGAAGTAA

Coding sequence (CDS)

ATGTCTTCCTCCATACGCTTCACTCTCCGCCGCCACAACGTCAGGCACGATCAATCTCTCCAAAACCGAAACCCATCCAGGCTTCCACTTCCATCCGACGAACTTCCGTACAATATCCTCCATCTAATTAGGCGCCGTGTTATGGGGGAGGAAACGGTGATTCTGGAAGAAGATCCGGCGAGGAGAAGGGCGCAGGAGAAGGCGATTGAGAGGTTGACGATCAGCGAGAAAGATGATGGGTTGTTTGAGGGAGAAGAGTTGGGAGATTGTTGTATTTGTTGCGAAGAACTGAATGGAGGGGAGAAGAAGAAGAAGTAA

Protein sequence

MSSSIRFTLRRHNVRHDQSLQNRNPSRLPLPSDELPYNILHLIRRRVMGEETVILEEDPARRRAQEKAIERLTISEKDDGLFEGEELGDCCICCEELNGGEKKKK*
Homology
BLAST of CSPI03G29310 vs. ExPASy TrEMBL
Match: A0A0A0LER3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G680620 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.3e-51
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 0

Query: 1   MSSSIRFTLRRHNVRHDQSLQNRNPSRLPLPSDELPYNILHLIRRRVMGEETVILEEDPA 60
           MSSSIRFTLRRHNVRHDQSLQNRNPSRLPLPSDELPYNILHLIRRRVMGEETVILEEDPA
Sbjct: 1   MSSSIRFTLRRHNVRHDQSLQNRNPSRLPLPSDELPYNILHLIRRRVMGEETVILEEDPA 60

Query: 61  RRRAQEKAIERLTISEKDDGLFEGEELGDCCICCEELNGGEKKKK 106
           RRRAQEKAIERLTISEKDDGLFEGEELGDCCICCEELNGGEKKKK
Sbjct: 61  RRRAQEKAIERLTISEKDDGLFEGEELGDCCICCEELNGGEKKKK 105

BLAST of CSPI03G29310 vs. ExPASy TrEMBL
Match: A0A5A7UAN0 (RING finger protein 165-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1856G00100 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 3.8e-14
Identity = 58/112 (51.79%), Postives = 68/112 (60.71%), Query Frame = 0

Query: 1   MSSSIRFTLRRHNVRHDQSLQNRNPSR----LPLPSDE-LPYNILHLIRRRVMGEETVIL 60
           MS+ IRFT RRH  RHD+SLQNR+  R     PLP +E LPY+++H  RRRV+ +E VI 
Sbjct: 1   MSNPIRFTRRRHIARHDRSLQNRSRLRGHPFPPLPPNELLPYDVIHPFRRRVLRDERVIP 60

Query: 61  EEDPARRRAQEKAIERLTISEKDDGLFEGEELGDCCICCEELN--GGEKKKK 106
           EEDPA              SE+ DG  E E  GDCCIC EELN    EK KK
Sbjct: 61  EEDPA--------------SEEVDGYEEEELEGDCCICWEELNEEPNEKGKK 98

BLAST of CSPI03G29310 vs. ExPASy TrEMBL
Match: A0A5D3BYE9 (RING finger protein 165-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1856G00110 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.6e-04
Identity = 33/72 (45.83%), Postives = 43/72 (59.72%), Query Frame = 0

Query: 34  ELPYNILHLIRR--RVMGEETVILEEDPARRRAQEKAIERLTISEKDDGLFEGEELGDCC 93
           E+ + I+ LI R   +  EET       +R  ++  AIERL + EK DG  EG ELGDCC
Sbjct: 116 EVKFRIVALIDRVQMIWREET-----GKSRGGSRRAAIERLMMMEKFDGFEEGRELGDCC 175

Query: 94  ICCEELNGGEKK 104
           +C EEL G EK+
Sbjct: 176 VCYEELKGEEKE 182

BLAST of CSPI03G29310 vs. NCBI nr
Match: XP_031738983.1 (E3 ubiquitin-protein ligase RNF181 homolog [Cucumis sativus] >KAE8650921.1 hypothetical protein Csa_002242 [Cucumis sativus])

HSP 1 Score: 209.9 bits (533), Expect = 1.1e-50
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0

Query: 1   MSSSIRFTLRRHNVRHDQSLQNRNPSRLPLPSDELPYNILHLIRRRVMGEETVILEEDPA 60
           MSSSIRFTLRRHNVRHDQSLQNRNPSRLPLPSDELPYNILHLIRRRVMGEETVILEEDPA
Sbjct: 1   MSSSIRFTLRRHNVRHDQSLQNRNPSRLPLPSDELPYNILHLIRRRVMGEETVILEEDPA 60

Query: 61  RRRAQEKAIERLTISEKDDGLFEGEELGDCCICCEELNGGEKKK 105
           RRRAQEKAIERLTISEKDDGLFEGEELGDCCICCEELNGGEKKK
Sbjct: 61  RRRAQEKAIERLTISEKDDGLFEGEELGDCCICCEELNGGEKKK 104

BLAST of CSPI03G29310 vs. NCBI nr
Match: KAA0052772.1 (RING finger protein 165-like protein [Cucumis melo var. makuwa] >TYK04184.1 RING finger protein 165-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 87.4 bits (215), Expect = 7.9e-14
Identity = 58/112 (51.79%), Postives = 68/112 (60.71%), Query Frame = 0

Query: 1   MSSSIRFTLRRHNVRHDQSLQNRNPSR----LPLPSDE-LPYNILHLIRRRVMGEETVIL 60
           MS+ IRFT RRH  RHD+SLQNR+  R     PLP +E LPY+++H  RRRV+ +E VI 
Sbjct: 1   MSNPIRFTRRRHIARHDRSLQNRSRLRGHPFPPLPPNELLPYDVIHPFRRRVLRDERVIP 60

Query: 61  EEDPARRRAQEKAIERLTISEKDDGLFEGEELGDCCICCEELN--GGEKKKK 106
           EEDPA              SE+ DG  E E  GDCCIC EELN    EK KK
Sbjct: 61  EEDPA--------------SEEVDGYEEEELEGDCCICWEELNEEPNEKGKK 98

BLAST of CSPI03G29310 vs. NCBI nr
Match: XP_038905732.1 (E3 ubiquitin-protein ligase arkadia-A-like [Benincasa hispida])

HSP 1 Score: 72.4 bits (176), Expect = 2.6e-09
Identity = 40/60 (66.67%), Postives = 45/60 (75.00%), Query Frame = 0

Query: 44  RRRVMGEETVILEEDPARRRAQEKAIERLTISEKDDGLFEGEELGDCCICCEELNGGEKK 103
           RR V+ EETVILEE P RR A + AIERL   EK DG F GEELGDCC+CCEEL  G+K+
Sbjct: 138 RRGVVAEETVILEEAPTRRTAAKTAIERLK-REKFDG-FRGEELGDCCVCCEELKEGKKE 195

BLAST of CSPI03G29310 vs. NCBI nr
Match: KAA0052771.1 (RING finger protein 165-like protein [Cucumis melo var. makuwa] >TYK04185.1 RING finger protein 165-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 7.4e-04
Identity = 33/72 (45.83%), Postives = 43/72 (59.72%), Query Frame = 0

Query: 34  ELPYNILHLIRR--RVMGEETVILEEDPARRRAQEKAIERLTISEKDDGLFEGEELGDCC 93
           E+ + I+ LI R   +  EET       +R  ++  AIERL + EK DG  EG ELGDCC
Sbjct: 116 EVKFRIVALIDRVQMIWREET-----GKSRGGSRRAAIERLMMMEKFDGFEEGRELGDCC 175

Query: 94  ICCEELNGGEKK 104
           +C EEL G EK+
Sbjct: 176 VCYEELKGEEKE 182

BLAST of CSPI03G29310 vs. NCBI nr
Match: XP_038876865.1 (putative RING-H2 finger protein ATL53 [Benincasa hispida])

HSP 1 Score: 54.3 bits (129), Expect = 7.4e-04
Identity = 28/60 (46.67%), Postives = 40/60 (66.67%), Query Frame = 0

Query: 44  RRRVMGEETVILEEDPARRRAQEKAIERLTISEKDDGLFEGEELGDCCICCEELNGGEKK 103
           RR ++ EE  +LEE PARRRA E+  +RL + + D+   +  E+GDCC+C EELN   K+
Sbjct: 143 RRGIVVEERAVLEEAPARRRAAERESKRLKMEKFDE--LKRAEMGDCCVCYEELNDVRKE 200

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LER31.3e-51100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G680620 PE=4 SV=1[more]
A0A5A7UAN03.8e-1451.79RING finger protein 165-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
A0A5D3BYE93.6e-0445.83RING finger protein 165-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E... [more]
Match NameE-valueIdentityDescription
XP_031738983.11.1e-50100.00E3 ubiquitin-protein ligase RNF181 homolog [Cucumis sativus] >KAE8650921.1 hypot... [more]
KAA0052772.17.9e-1451.79RING finger protein 165-like protein [Cucumis melo var. makuwa] >TYK04184.1 RING... [more]
XP_038905732.12.6e-0966.67E3 ubiquitin-protein ligase arkadia-A-like [Benincasa hispida][more]
KAA0052771.17.4e-0445.83RING finger protein 165-like protein [Cucumis melo var. makuwa] >TYK04185.1 RING... [more]
XP_038876865.17.4e-0446.67putative RING-H2 finger protein ATL53 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G29310.1CSPI03G29310.1mRNA