CSPI03G28910 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G28910
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Glutamate--tRNA ligase
Location	Chr3: 26465013 .. 26465533 (-)
RNA-Seq Expression	CSPI03G28910
Synteny	CSPI03G28910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTGTTTCCCCATCTAGTTTTTGCTAACATCAAGCAGCAACTCCTTTTGTTTTTTTCTTTTGAGAAGACCCAAAATCATGGATAGTAACTACAGCGCTTATGCGAACCAGAACTCGTCTCAGAGACCACTGGCCATTGTTTTGGCTCTTGCTTCTGCAGTGGTGCTTTCACCATTAAGATCCTATGAAACCAGTTGGAGCTCTGGATTTGTTGTTCCACTAGTTCTTTTGGGGCTTATAGTTGCCATTAAGACATCATCATCTTGCTCATCCACATCCAGAGATTCTGCAATTCTCCCTTCAGATCATCCTTCATGGGTTCTTAAAATTGGGAGCTCCTCTTGGGGACTTGCAGGGATCTTAATGATGTTAATTCTTGGGCTTTCTTGGCAAAGTTCTGTTCAAGAATTCCTCTGGAGATGAGAACCAAAACCCACTTGAATTTTTAATTTTGTTTGACTTATAAACTTGTATTGTTGCCACCTGATATGGATTAGAAATTTAAAGTGCATTGATCTCGGC

mRNA sequence

CCTGTTTCCCCATCTAGTTTTTGCTAACATCAAGCAGCAACTCCTTTTGTTTTTTTCTTTTGAGAAGACCCAAAATCATGGATAGTAACTACAGCGCTTATGCGAACCAGAACTCGTCTCAGAGACCACTGGCCATTGTTTTGGCTCTTGCTTCTGCAGTGGTGCTTTCACCATTAAGATCCTATGAAACCAGTTGGAGCTCTGGATTTGTTGTTCCACTAGTTCTTTTGGGGCTTATAGTTGCCATTAAGACATCATCATCTTGCTCATCCACATCCAGAGATTCTGCAATTCTCCCTTCAGATCATCCTTCATGGGTTCTTAAAATTGGGAGCTCCTCTTGGGGACTTGCAGGGATCTTAATGATGTTAATTCTTGGGCTTTCTTGGCAAAGTTCTGTTCAAGAATTCCTCTGGAGATGAGAACCAAAACCCACTTGAATTTTTAATTTTGTTTGACTTATAAACTTGTATTGTTGCCACCTGATATGGATTAGAAATTTAAAGTGCATTGATCTCGGC

Coding sequence (CDS)

ATGGATAGTAACTACAGCGCTTATGCGAACCAGAACTCGTCTCAGAGACCACTGGCCATTGTTTTGGCTCTTGCTTCTGCAGTGGTGCTTTCACCATTAAGATCCTATGAAACCAGTTGGAGCTCTGGATTTGTTGTTCCACTAGTTCTTTTGGGGCTTATAGTTGCCATTAAGACATCATCATCTTGCTCATCCACATCCAGAGATTCTGCAATTCTCCCTTCAGATCATCCTTCATGGGTTCTTAAAATTGGGAGCTCCTCTTGGGGACTTGCAGGGATCTTAATGATGTTAATTCTTGGGCTTTCTTGGCAAAGTTCTGTTCAAGAATTCCTCTGGAGATGA

Protein sequence

MDSNYSAYANQNSSQRPLAIVLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTSSSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR*

Homology

[Close]

BLAST of CSPI03G28910 vs. ExPASy TrEMBL
Match: A0A0A0LEN3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G651850 PE=4 SV=1)

HSP 1 Score: 217.6 bits (553), Expect = 2.7e-53
Identity = 113/114 (99.12%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MDSNYSAYANQNSSQRPLAIVLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTS 60
           MDSNYSAYANQNSSQRPLAI LALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTS
Sbjct: 1   MDSNYSAYANQNSSQRPLAIFLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTS 60

Query: 61  SSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 115
           SSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR
Sbjct: 61  SSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 114

[Close]

BLAST of CSPI03G28910 vs. ExPASy TrEMBL
Match: A0A5A7UY99 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G001090 PE=4 SV=1)

HSP 1 Score: 209.5 bits (532), Expect = 7.3e-51
Identity = 108/114 (94.74%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MDSNYSAYANQNSSQRPLAIVLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTS 60
           MDSNY AY NQNSS RPLAIVLALASAV LSPLRSYETSWSSGFVVPLVLLGLI+AIKTS
Sbjct: 1   MDSNYCAYVNQNSSLRPLAIVLALASAVALSPLRSYETSWSSGFVVPLVLLGLIIAIKTS 60

Query: 61  SSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 115
           S CSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR
Sbjct: 61  SCCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 114

[Close]

BLAST of CSPI03G28910 vs. ExPASy TrEMBL
Match: A0A7N2LMQ6 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.9e-31
Identity = 78/118 (66.10%), Postives = 92/118 (77.97%), Query Frame = 0


Query: 8   YANQNSSQRPLAIVLALASAVVLSPL--------RSYETSWSSGFVVPLVLLGLIVAIKT 67
           Y +Q SSQR +A+VLAL SA+VLSPL        R YET WSSGFV+P+VL GLI+AIKT
Sbjct: 6   YTSQYSSQRSVAMVLALVSAIVLSPLYVTRKNDTRYYETKWSSGFVLPMVLAGLIIAIKT 65

Query: 68  SSSCSSTSRD---SAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 115
           +SSCSS S     ++I+PS  PSWVL+IGSSSWGLAGIL+ML+L LSWQ SVQEF WR
Sbjct: 66  TSSCSSMSAQGGRASIIPSPDPSWVLRIGSSSWGLAGILVMLLLVLSWQESVQEFFWR 123

[Close]

BLAST of CSPI03G28910 vs. ExPASy TrEMBL
Match: A0A067KX22 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_24696 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.9e-30
Identity = 77/119 (64.71%), Postives = 93/119 (78.15%), Query Frame = 0


Query: 5   YSAYANQNSSQRPLAIVLALASAVVLSP---------LRSYETSWSSGFVVPLVLLGLIV 64
           Y+ Y++QNSSQR LA+VLAL SAVVLSP         LR YET WSSGFV+P+VL GLI+
Sbjct: 4   YNNYSSQNSSQRGLALVLALVSAVVLSPLYVNRKTDSLRFYETKWSSGFVLPMVLGGLII 63

Query: 65  AIKTSSSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 115
           AI+T+S+ SS  R  +++P   PSWVL+IGSSSWGLAGIL+ML+L LSWQ SVQEF WR
Sbjct: 64  AIRTTST-SSVQRRESLIPCPDPSWVLRIGSSSWGLAGILVMLMLVLSWQESVQEFFWR 121

[Close]

BLAST of CSPI03G28910 vs. ExPASy TrEMBL
Match: A0A2N9IBH6 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS49527 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 3.2e-30
Identity = 75/119 (63.03%), Postives = 93/119 (78.15%), Query Frame = 0


Query: 8   YANQNSSQRPLAIVLALASAVVLSPLRS--------YETSWSSGFVVPLVLLGLIVAIKT 67
           Y  Q SSQR +A+VL+L SA+VLSPL +        YET WSSGFV+P+VL+GLI+AI+T
Sbjct: 6   YTGQYSSQRSVAMVLSLVSAIVLSPLYARRKNDTSYYETKWSSGFVLPMVLVGLIIAIRT 65

Query: 68  SSSCSSTSRD----SAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 115
           +SSCSS S      ++I+PS  PSWVL+IGSSSWGLAGIL+ML+L LSWQ+SVQEF WR
Sbjct: 66  TSSCSSMSAQGGARASIIPSPDPSWVLRIGSSSWGLAGILVMLLLVLSWQASVQEFFWR 124

[Close]

BLAST of CSPI03G28910 vs. NCBI nr
Match: KAE8637311.1 (hypothetical protein CSA_023553, partial [Cucumis sativus])

HSP 1 Score: 217.6 bits (553), Expect = 5.5e-53
Identity = 113/114 (99.12%), Postives = 113/114 (99.12%), Query Frame = 0


Query: 1   MDSNYSAYANQNSSQRPLAIVLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTS 60
           MDSNYSAYANQNSSQRPLAI LALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTS
Sbjct: 4   MDSNYSAYANQNSSQRPLAIFLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTS 63

Query: 61  SSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 115
           SSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR
Sbjct: 64  SSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 117

[Close]

BLAST of CSPI03G28910 vs. NCBI nr
Match: KAA0058525.1 (putative transmembrane protein [Cucumis melo var. makuwa] >TYK07220.1 putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 209.5 bits (532), Expect = 1.5e-50
Identity = 108/114 (94.74%), Postives = 109/114 (95.61%), Query Frame = 0


Query: 1   MDSNYSAYANQNSSQRPLAIVLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTS 60
           MDSNY AY NQNSS RPLAIVLALASAV LSPLRSYETSWSSGFVVPLVLLGLI+AIKTS
Sbjct: 1   MDSNYCAYVNQNSSLRPLAIVLALASAVALSPLRSYETSWSSGFVVPLVLLGLIIAIKTS 60

Query: 61  SSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 115
           S CSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR
Sbjct: 61  SCCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 114

[Close]

BLAST of CSPI03G28910 vs. NCBI nr
Match: KAG6581812.1 (hypothetical protein SDJN03_21814, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 179.5 bits (454), Expect = 1.7e-41
Identity = 99/119 (83.19%), Postives = 104/119 (87.39%), Query Frame = 0


Query: 1   MDSNYSAYANQNSSQRPLAIVLALASAVVLSPLRSYETSWSSGFVVPLVLLGLIVAIKTS 60
           MDSNY AY NQ SSQRPLAIVLALASAVVLSPLR YE+ WSSGFV+PLVLL LI+AIKTS
Sbjct: 1   MDSNYGAYTNQISSQRPLAIVLALASAVVLSPLRPYESRWSSGFVLPLVLLVLIIAIKTS 60

Query: 61  SSCSSTS-----RDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 115
           SSCSS S     RDSAIL SD PSWVLKIGSSSWGLAG+LMMLI GLSWQSSV+EFLWR
Sbjct: 61  SSCSSMSTDRRERDSAILSSD-PSWVLKIGSSSWGLAGLLMMLIFGLSWQSSVKEFLWR 118

[Close]

BLAST of CSPI03G28910 vs. NCBI nr
Match: XP_030969466.1 (uncharacterized protein LOC115989757 [Quercus lobata])

HSP 1 Score: 144.4 bits (363), Expect = 5.9e-31
Identity = 78/118 (66.10%), Postives = 92/118 (77.97%), Query Frame = 0


Query: 8   YANQNSSQRPLAIVLALASAVVLSPL--------RSYETSWSSGFVVPLVLLGLIVAIKT 67
           Y +Q SSQR +A+VLAL SA+VLSPL        R YET WSSGFV+P+VL GLI+AIKT
Sbjct: 6   YTSQYSSQRSVAMVLALVSAIVLSPLYVTRKNDTRYYETKWSSGFVLPMVLAGLIIAIKT 65

Query: 68  SSSCSSTSRD---SAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLWR 115
           +SSCSS S     ++I+PS  PSWVL+IGSSSWGLAGIL+ML+L LSWQ SVQEF WR
Sbjct: 66  TSSCSSMSAQGGRASIIPSPDPSWVLRIGSSSWGLAGILVMLLLVLSWQESVQEFFWR 123

[Close]

BLAST of CSPI03G28910 vs. NCBI nr
Match: KAF7814039.1 (hypothetical protein G2W53_028008 [Senna tora])

HSP 1 Score: 144.4 bits (363), Expect = 5.9e-31
Identity = 78/121 (64.46%), Postives = 96/121 (79.34%), Query Frame = 0


Query: 5   YSAYANQNSSQRPLAIVLALASAVVLSPL-----------RSYETSWSSGFVVPLVLLGL 64
           Y+AY++Q SSQR LA+VLALASAVVLSPL           R YE+ WS GFV+P++L GL
Sbjct: 8   YAAYSSQGSSQRSLAMVLALASAVVLSPLYNVKPKSEGIGRYYESKWSFGFVLPMLLAGL 67

Query: 65  IVAIKTSSSCSSTSRDSAILPSDHPSWVLKIGSSSWGLAGILMMLILGLSWQSSVQEFLW 115
           I+AI+TSSS SST R +++LPS  PSWVL+IGSSSWGLAG+L+ML+L L WQ+SVQEF W
Sbjct: 68  IIAIRTSSSSSSTPR-ASLLPSPEPSWVLRIGSSSWGLAGVLLMLMLVLHWQASVQEFFW 127

The following BLAST results are available for this feature:

BLAST of CSPI03G28910 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G28910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEN3	2.7e-53	99.12	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G651850 PE=4 SV=1	[more]
A0A5A7UY99	7.3e-51	94.74	Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A7N2LMQ6	2.9e-31	66.10	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A067KX22	1.9e-30	64.71	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_24696 PE=4 SV=1	[more]
A0A2N9IBH6	3.2e-30	63.03	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS49527 PE=4 SV=1	[more]

BLAST of CSPI03G28910 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8637311.1	5.5e-53	99.12	hypothetical protein CSA_023553, partial [Cucumis sativus]	[more]
KAA0058525.1	1.5e-50	94.74	putative transmembrane protein [Cucumis melo var. makuwa] >TYK07220.1 putative t...	[more]
KAG6581812.1	1.7e-41	83.19	hypothetical protein SDJN03_21814, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_030969466.1	5.9e-31	66.10	uncharacterized protein LOC115989757 [Quercus lobata]	[more]
KAF7814039.1	5.9e-31	64.46	hypothetical protein G2W53_028008 [Senna tora]	[more]

BLAST of CSPI03G28910 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35758:SF1	SERINE RICH PROTEIN	coord: 1..114
None	No IPR available	PANTHER	PTHR35758	TRANSMEMBRANE PROTEIN	coord: 1..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G28910.1	CSPI03G28910.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane