CSPI03G27010 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G27010
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr3: 24432923 .. 24433718 (+)
RNA-Seq ExpressionCSPI03G27010
SyntenyCSPI03G27010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATTCGATTTTCTTCTCTTTTTCTCTGATTATCTTCTTCATTTTCTATTGTCTTCTCCCTTTCCTTTCCGGTGTTAACCGAAATGAAAGGAAATCTACATTTTCTTCTTTTCATTTTTTACGATCGGTCCCATTCTGTTTGTCTTCAATTTTTGCCCTACCCTTCTCGATTTTATGTTCCTGCCATCGAAACTCATTTTCATTTTCCAACGGTTGCGTTTCGACCCTACCTCTGGAACGCTTCTCACAAAACAAGACTGCTTCACTTACTCCGTTTTCTCCCTATTGGTTTCCTCATTATGTTTACTTTTTCTTTTTTATGGTTGTTGCACCATAATTGTGATTGTCTACCATGCTCGCTTACCATGTTAATGCATCCCATTTGTTTTTGCCATTTTAGTCACTATATTGAATACTTTACAAACACTTTACAAACCACTGACTTTATGCTAACTCCCTCTCTGTTTGCTTGGCCCTTTTTAACATTCTTACCACTATTGTGTATGTCTCATGTGCTCAATTATCATGTTAATTCATCCCATTTGTTTTTCCATTTTAGCCACTATATTGAATTTTTTACAACCCAATATTTTGTCACAATGTTTGCTTGTTCTTTTGATTAATCCCTTGCTCTTTTCAATGATCCCTTACTCTCGGTTTGCTCACTATTTTGTCACAATGCCCACCGTTTTGTCACCATGTCTCCCTTGCGCTTTTGAATGATCTTGATTTTTCTGACTCTTTTTTCTTGCTTTGCTTTTACATATGATGTTATCGAGTCCACCACACGAAATTCT

mRNA sequence

TATTCGATTTTCTTCTCTTTTTCTCTGATTATCTTCTTCATTTTCTATTGTCTTCTCCCTTTCCTTTCCGGTGTTAACCGAAATGAAAGGAAATCTACATTTTCTTCTTTTCATTTTTTACGATCGGTCCCATTCTGTTTGTCTTCAATTTTTGCCCTACCCTTCTCGATTTTATGTTCCTGCCATCGAAACTCATTTTCATTTTCCAACGGTTGCGTTTCGACCCTACCTCTGGAACGCTTCTCACAAAACAAGACTGCTTCACTTACTCCGTTTTCTCCCTATTGGTTTCCTCATTATGTTTACTTTTTCTTTTTTATGGTTGTTGCACCATAATTGTGATTGTCTACCATGCTCGCTTACCATGTTAATGCATCCCATTTGTTTTTGCCATTTTAGTCACTATATTGAATACTTTACAAACACTTTACAAACCACTGACTTTATGCTAACTCCCTCTCTGTTTGCTTGGCCCTTTTTAACATTCTTACCACTATTGTGTATGTCTCATGTGCTCAATTATCATGTTAATTCATCCCATTTGTTTTTCCATTTTAGCCACTATATTGAATTTTTTACAACCCAATATTTTGTCACAATGTTTGCTTGTTCTTTTGATTAATCCCTTGCTCTTTTCAATGATCCCTTACTCTCGGTTTGCTCACTATTTTGTCACAATGCCCACCGTTTTGTCACCATGTCTCCCTTGCGCTTTTGAATGATCTTGATTTTTCTGACTCTTTTTTCTTGCTTTGCTTTTACATATGATGTTATCGAGTCCACCACACGAAATTCT

Coding sequence (CDS)

ATGAAAGGAAATCTACATTTTCTTCTTTTCATTTTTTACGATCGGTCCCATTCTGTTTGTCTTCAATTTTTGCCCTACCCTTCTCGATTTTATGTTCCTGCCATCGAAACTCATTTTCATTTTCCAACGGTTGCGTTTCGACCCTACCTCTGGAACGCTTCTCACAAAACAAGACTGCTTCACTTACTCCGTTTTCTCCCTATTGGTTTCCTCATTATGTTTACTTTTTCTTTTTTATGGTTGTTGCACCATAATTGTGATTGTCTACCATGCTCGCTTACCATGTTAATGCATCCCATTTGTTTTTGCCATTTTAGTCACTATATTGAATACTTTACAAACACTTTACAAACCACTGACTTTATGCTAACTCCCTCTCTGTTTGCTTGGCCCTTTTTAACATTCTTACCACTATTGTGTATGTCTCATGTGCTCAATTATCATGTTAATTCATCCCATTTGTTTTTCCATTTTAGCCACTATATTGAATTTTTTACAACCCAATATTTTGTCACAATGTTTGCTTGTTCTTTTGATTAA

Protein sequence

MKGNLHFLLFIFYDRSHSVCLQFLPYPSRFYVPAIETHFHFPTVAFRPYLWNASHKTRLLHLLRFLPIGFLIMFTFSFLWLLHHNCDCLPCSLTMLMHPICFCHFSHYIEYFTNTLQTTDFMLTPSLFAWPFLTFLPLLCMSHVLNYHVNSSHLFFHFSHYIEFFTTQYFVTMFACSFD*
Homology
[Close]
BLAST of CSPI03G27010 vs. NCBI nr
Match: KAE8650835.1 (hypothetical protein Csa_023864 [Cucumis sativus])

HSP 1 Score: 233.8 bits (595), Expect = 1.2e-57
Identity = 108/109 (99.08%), Postives = 108/109 (99.08%), Query Frame = 0 

Query: 1   MKGNLHFLLFIFYDRSHSVCLQFLPYPSRFYVPAIETHFHFPTVAFRPYLWNASHKTRLL 60
           MKGNLHFLLFIFYDRSHSVCLQFLPYPSRFYVPAIETHFHFPTVAFRPYLWNASHKTRLL
Sbjct: 1   MKGNLHFLLFIFYDRSHSVCLQFLPYPSRFYVPAIETHFHFPTVAFRPYLWNASHKTRLL 60

Query: 61  HLLRFLPIGFLIMFTFSFLWLLHHNCDCLPCSLTMLMHPICFCHFSHYI 110
           HLLRFLPIGFLIMFTFSFLWLLHHNCDCLPCSLTMLMHPICFCHFSH I
Sbjct: 61  HLLRFLPIGFLIMFTFSFLWLLHHNCDCLPCSLTMLMHPICFCHFSHCI 109

[Close]
BLAST of CSPI03G27010 vs. NCBI nr
Match: XP_004152008.1 (uncharacterized protein LOC101205771 isoform X4 [Cucumis sativus])

HSP 1 Score: 146.7 bits (369), Expect = 1.9e-31
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MKGNLHFLLFIFYDRSHSVCLQFLPYPSRFYVPAIETHFHFPTVAFRPYLWNASHKTRLL 60
          MKGNLHFLLFIFYDRSHSVCLQFLPYPSRFYVPAIETHFHFPTVAFRPYLWNASHKTRLL
Sbjct: 1  MKGNLHFLLFIFYDRSHSVCLQFLPYPSRFYVPAIETHFHFPTVAFRPYLWNASHKTRLL 60

Query: 61 HLLRFLPI 69
          HLLRFLPI
Sbjct: 61 HLLRFLPI 68

[Close]
BLAST of CSPI03G27010 vs. NCBI nr
Match: XP_011651624.1 (uncharacterized protein LOC101205771 isoform X1 [Cucumis sativus])

HSP 1 Score: 146.7 bits (369), Expect = 1.9e-31
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MKGNLHFLLFIFYDRSHSVCLQFLPYPSRFYVPAIETHFHFPTVAFRPYLWNASHKTRLL 60
          MKGNLHFLLFIFYDRSHSVCLQFLPYPSRFYVPAIETHFHFPTVAFRPYLWNASHKTRLL
Sbjct: 1  MKGNLHFLLFIFYDRSHSVCLQFLPYPSRFYVPAIETHFHFPTVAFRPYLWNASHKTRLL 60

Query: 61 HLLRFLPI 69
          HLLRFLPI
Sbjct: 61 HLLRFLPI 68

[Close]
BLAST of CSPI03G27010 vs. NCBI nr
Match: XP_011651626.1 (uncharacterized protein LOC101205771 isoform X3 [Cucumis sativus])

HSP 1 Score: 146.7 bits (369), Expect = 1.9e-31
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MKGNLHFLLFIFYDRSHSVCLQFLPYPSRFYVPAIETHFHFPTVAFRPYLWNASHKTRLL 60
          MKGNLHFLLFIFYDRSHSVCLQFLPYPSRFYVPAIETHFHFPTVAFRPYLWNASHKTRLL
Sbjct: 1  MKGNLHFLLFIFYDRSHSVCLQFLPYPSRFYVPAIETHFHFPTVAFRPYLWNASHKTRLL 60

Query: 61 HLLRFLPI 69
          HLLRFLPI
Sbjct: 61 HLLRFLPI 68

[Close]
BLAST of CSPI03G27010 vs. NCBI nr
Match: XP_011651625.1 (uncharacterized protein LOC101205771 isoform X2 [Cucumis sativus])

HSP 1 Score: 146.7 bits (369), Expect = 1.9e-31
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 

Query: 1  MKGNLHFLLFIFYDRSHSVCLQFLPYPSRFYVPAIETHFHFPTVAFRPYLWNASHKTRLL 60
          MKGNLHFLLFIFYDRSHSVCLQFLPYPSRFYVPAIETHFHFPTVAFRPYLWNASHKTRLL
Sbjct: 1  MKGNLHFLLFIFYDRSHSVCLQFLPYPSRFYVPAIETHFHFPTVAFRPYLWNASHKTRLL 60

Query: 61 HLLRFLPI 69
          HLLRFLPI
Sbjct: 61 HLLRFLPI 68

The following BLAST results are available for this feature:
BLAST of CSPI03G27010 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI03G27010 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI03G27010 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8650835.11.2e-5799.08hypothetical protein Csa_023864 [Cucumis sativus][more]
XP_004152008.11.9e-31100.00uncharacterized protein LOC101205771 isoform X4 [Cucumis sativus][more]
XP_011651624.11.9e-31100.00uncharacterized protein LOC101205771 isoform X1 [Cucumis sativus][more]
XP_011651626.11.9e-31100.00uncharacterized protein LOC101205771 isoform X3 [Cucumis sativus][more]
XP_011651625.11.9e-31100.00uncharacterized protein LOC101205771 isoform X2 [Cucumis sativus][more]
BLAST of CSPI03G27010 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G27010.1CSPI03G27010.1mRNA