CSPI03G25930 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G25930
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Cell wall protein DAN4-like
Location	Chr3: 23216892 .. 23217271 (+)
RNA-Seq Expression	CSPI03G25930
Synteny	CSPI03G25930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCCTTCTTTCTATCTTCTTTTTCTTCAATATCATCTCTTACATTAATTTATCATAATGGCTTACCAATCTCTTGCTTTCTTGGCTCTCATCATTGTCGCTGTCACTGGTGTTGTTGCTCAGGGTCCTACCTCCTCCACTCCAGCTCCCACCACCTCCTCATTTGATTCCTCCACTCCCTCGTCTTCATCTTCACTTGATTCAACCACCACCACGACCACCACCTCCTCCTCCTCAGGTTCCTCTGCTGATTCCCCATCAATCTCAGTGGCTCCTGGATTGGCACCCGATTCCTATGCTCAATCACCAACGACCGCAGCATCTCCCACCGGTTCTTCTGCTGAGACTTCTCGCTTCTTTACAAATGGGTTTTTTGGTTGA

mRNA sequence

TCCCTTCTTTCTATCTTCTTTTTCTTCAATATCATCTCTTACATTAATTTATCATAATGGCTTACCAATCTCTTGCTTTCTTGGCTCTCATCATTGTCGCTGTCACTGGTGTTGTTGCTCAGGGTCCTACCTCCTCCACTCCAGCTCCCACCACCTCCTCATTTGATTCCTCCACTCCCTCGTCTTCATCTTCACTTGATTCAACCACCACCACGACCACCACCTCCTCCTCCTCAGGTTCCTCTGCTGATTCCCCATCAATCTCAGTGGCTCCTGGATTGGCACCCGATTCCTATGCTCAATCACCAACGACCGCAGCATCTCCCACCGGTTCTTCTGCTGAGACTTCTCGCTTCTTTACAAATGGGTTTTTTGGTTGA

Coding sequence (CDS)

ATGGCTTACCAATCTCTTGCTTTCTTGGCTCTCATCATTGTCGCTGTCACTGGTGTTGTTGCTCAGGGTCCTACCTCCTCCACTCCAGCTCCCACCACCTCCTCATTTGATTCCTCCACTCCCTCGTCTTCATCTTCACTTGATTCAACCACCACCACGACCACCACCTCCTCCTCCTCAGGTTCCTCTGCTGATTCCCCATCAATCTCAGTGGCTCCTGGATTGGCACCCGATTCCTATGCTCAATCACCAACGACCGCAGCATCTCCCACCGGTTCTTCTGCTGAGACTTCTCGCTTCTTTACAAATGGGTTTTTTGGTTGA

Protein sequence

MAYQSLAFLALIIVAVTGVVAQGPTSSTPAPTTSSFDSSTPSSSSSLDSTTTTTTTSSSSGSSADSPSISVAPGLAPDSYAQSPTTAASPTGSSAETSRFFTNGFFG*

Homology

[Close]

BLAST of CSPI03G25930 vs. ExPASy TrEMBL
Match: A0A0A0LB81 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G592680 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.3e-38
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 0


Query: 1   MAYQSLAFLALIIVAVTGVVAQGPTSSTPAPTTSSFDSSTPSSSSSLDS--TTTTTTTSS 60
           MAYQSLAFLALIIVAVTGVVAQGPTSSTPAPTTSSFDSSTPSSSSSLDS  TTTTTTTSS
Sbjct: 1   MAYQSLAFLALIIVAVTGVVAQGPTSSTPAPTTSSFDSSTPSSSSSLDSTTTTTTTTTSS 60

Query: 61  SSGSSADSPSISVAPGLAPDSYAQSPTTAASPTGSSAETSRFFTNGFFG 108
           SSGSSADSPSISVAPGLAPDSYAQSPTTAASPTGSSAETSRFFTNGFFG
Sbjct: 61  SSGSSADSPSISVAPGLAPDSYAQSPTTAASPTGSSAETSRFFTNGFFG 109

[Close]

BLAST of CSPI03G25930 vs. ExPASy TrEMBL
Match: A0A0A0L8Q5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G592670 PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 5.8e-26
Identity = 89/111 (80.18%), Postives = 95/111 (85.59%), Query Frame = 0


Query: 1   MAYQSLAFLALIIVAVTGVVAQGPTSSTPAPTTSSFD---SSTPSSSSSLDSTTTTTTTS 60
           MAYQSLAFLALIIVA+TG VAQGPTSSTPAPTTSS     +S+ SSSSSLDSTTTTTTT 
Sbjct: 1   MAYQSLAFLALIIVAITGAVAQGPTSSTPAPTTSSTPAPMTSSSSSSSSLDSTTTTTTT- 60

Query: 61  SSSGSSADSPSISVAPGLAPDSYAQSPTTAASPTGS-SAETSRFFTNGFFG 108
            SSGSS DSPSIS APGL+PDS AQSPTTA SP+GS S ETSR F+NGFFG
Sbjct: 61  -SSGSSIDSPSISAAPGLSPDSSAQSPTTATSPSGSPSIETSRLFSNGFFG 109

[Close]

BLAST of CSPI03G25930 vs. ExPASy TrEMBL
Match: A0A5D3C1H7 (Cell wall protein DAN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00200 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 7.4e-21
Identity = 85/111 (76.58%), Postives = 90/111 (81.08%), Query Frame = 0


Query: 1   MAYQSLAFLALIIVAVTGVVAQGP-TSSTPAPT--TSSFDSSTPSSSSSLDSTTTTTTTS 60
           MAYQSLA LALI+VAVTG VAQ P TS T +PT  TSS DSST SSSSSLDSTTTTTTT+
Sbjct: 1   MAYQSLALLALIVVAVTGAVAQAPSTSPTSSPTTMTSSVDSST-SSSSSLDSTTTTTTTT 60

Query: 61  SSSGSSADSPSISVAPGLAPDSYAQSPTTAASPTGS-SAETSRFFTNGFFG 108
               SSAD+ SISVAP  +PDS AQSPTTA SPTGS S ETSRFFTNGFFG
Sbjct: 61  ----SSADASSISVAPAFSPDSSAQSPTTATSPTGSPSGETSRFFTNGFFG 106

[Close]

BLAST of CSPI03G25930 vs. ExPASy TrEMBL
Match: A0A1S3BPQ2 (cell wall protein DAN4-like OS=Cucumis melo OX=3656 GN=LOC103491867 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.1e-19
Identity = 80/109 (73.39%), Postives = 88/109 (80.73%), Query Frame = 0


Query: 1   MAYQSLAFLALIIVAVTGVVAQGPT---SSTPAPTTSSFDSSTPSSSSSLDSTTTTTTTS 60
           MAYQSLAFL LIIVA+TGVVAQ P+   +STPA  TSSFDSST SSSSSLDSTTT TTT+
Sbjct: 1   MAYQSLAFLTLIIVAITGVVAQAPSTSPTSTPATMTSSFDSST-SSSSSLDSTTTPTTTT 60

Query: 61  SSSGSSADSPSISVAPGLAPDSYAQSPTTAASPTGS-SAETSRFFTNGF 106
           +   SS D  SIS+AP  +PDS AQSPTTA SPTGS SAETSR F+NGF
Sbjct: 61  T---SSTDDSSISIAPAFSPDSSAQSPTTATSPTGSTSAETSRLFSNGF 105

[Close]

BLAST of CSPI03G25930 vs. ExPASy TrEMBL
Match: A0A5D3C1I1 (Cell wall protein DAN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G00260 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 7.6e-18
Identity = 79/109 (72.48%), Postives = 83/109 (76.15%), Query Frame = 0


Query: 1   MAYQSLAFLALIIVAVTGVVAQGP-TSSTPAPTTSSFDSSTPSSSSSLDSTTTTTTTSSS 60
           MAYQSLAFLALIIVAVTG VAQ P TS T  P T    +S+ SSSSSLDSTT  TTT   
Sbjct: 1   MAYQSLAFLALIIVAVTGAVAQAPATSPTSTPATM---TSSASSSSSLDSTTIPTTTI-- 60

Query: 61  SGSSADSPSISVAPGLAPDSYAQSPTTAASPTGS-SAETSRFFTNGFFG 108
             SSAD+ SISVAP  +PDS AQSPTTA SPTGS SAETSR FTNGFFG
Sbjct: 61  --SSADASSISVAPAFSPDSSAQSPTTATSPTGSPSAETSRLFTNGFFG 102

[Close]

BLAST of CSPI03G25930 vs. NCBI nr
Match: XP_031737565.1 (putative protein TPRXL [Cucumis sativus] >KAE8650787.1 hypothetical protein Csa_017464 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 4.4e-36
Identity = 107/117 (91.45%), Postives = 107/117 (91.45%), Query Frame = 0


Query: 1   MAYQSLAFLALIIVAVTGVVAQGP--------TSSTPAPTTSSFDSSTPSSSSSLDS--T 60
           MAYQSLAFLALIIVAVTGVVAQGP        TSSTPAPTTSSFDSSTPSSSSSLDS  T
Sbjct: 1   MAYQSLAFLALIIVAVTGVVAQGPTSSTPAPTTSSTPAPTTSSFDSSTPSSSSSLDSTTT 60

Query: 61  TTTTTTSSSSGSSADSPSISVAPGLAPDSYAQSPTTAASPTGSSAETSRFFTNGFFG 108
           TTTTTTSSSSGSSADSPSISVAPGLAPDSYAQSPTTAASPTGSSAETSRFFTNGFFG
Sbjct: 61  TTTTTTSSSSGSSADSPSISVAPGLAPDSYAQSPTTAASPTGSSAETSRFFTNGFFG 117

[Close]

BLAST of CSPI03G25930 vs. NCBI nr
Match: KAE8650786.1 (hypothetical protein Csa_017544 [Cucumis sativus])

HSP 1 Score: 157.5 bits (397), Expect = 6.4e-35
Identity = 105/116 (90.52%), Postives = 105/116 (90.52%), Query Frame = 0


Query: 1   MAYQSLAFLALIIVAVTGVVAQGP--------TSSTPAPTTSSFDSSTPSSSSSLDSTTT 60
           MAYQSLAFLALIIVAVTGVVAQGP        TSSTPAPTTSSFDSSTPSSSSSLDSTTT
Sbjct: 1   MAYQSLAFLALIIVAVTGVVAQGPTSSTPAPTTSSTPAPTTSSFDSSTPSSSSSLDSTTT 60

Query: 61  TTTT-SSSSGSSADSPSISVAPGLAPDSYAQSPTTAASPTGSSAETSRFFTNGFFG 108
           TTTT SSSSGSS  SPSISVAPGLAPDSYAQSPTTAASPTGSSAETSRFFTNGFFG
Sbjct: 61  TTTTSSSSSGSSTGSPSISVAPGLAPDSYAQSPTTAASPTGSSAETSRFFTNGFFG 116

[Close]

BLAST of CSPI03G25930 vs. NCBI nr
Match: KGN58213.1 (hypothetical protein Csa_017497 [Cucumis sativus])

HSP 1 Score: 126.7 bits (317), Expect = 1.2e-25
Identity = 89/111 (80.18%), Postives = 95/111 (85.59%), Query Frame = 0


Query: 1   MAYQSLAFLALIIVAVTGVVAQGPTSSTPAPTTSSFD---SSTPSSSSSLDSTTTTTTTS 60
           MAYQSLAFLALIIVA+TG VAQGPTSSTPAPTTSS     +S+ SSSSSLDSTTTTTTT 
Sbjct: 1   MAYQSLAFLALIIVAITGAVAQGPTSSTPAPTTSSTPAPMTSSSSSSSSLDSTTTTTTT- 60

Query: 61  SSSGSSADSPSISVAPGLAPDSYAQSPTTAASPTGS-SAETSRFFTNGFFG 108
            SSGSS DSPSIS APGL+PDS AQSPTTA SP+GS S ETSR F+NGFFG
Sbjct: 61  -SSGSSIDSPSISAAPGLSPDSSAQSPTTATSPSGSPSIETSRLFSNGFFG 109

[Close]

BLAST of CSPI03G25930 vs. NCBI nr
Match: KAA0056285.1 (cell wall protein DAN4-like [Cucumis melo var. makuwa] >TYK05215.1 cell wall protein DAN4-like [Cucumis melo var. makuwa])

HSP 1 Score: 109.8 bits (273), Expect = 1.5e-20
Identity = 85/111 (76.58%), Postives = 90/111 (81.08%), Query Frame = 0


Query: 1   MAYQSLAFLALIIVAVTGVVAQGP-TSSTPAPT--TSSFDSSTPSSSSSLDSTTTTTTTS 60
           MAYQSLA LALI+VAVTG VAQ P TS T +PT  TSS DSST SSSSSLDSTTTTTTT+
Sbjct: 1   MAYQSLALLALIVVAVTGAVAQAPSTSPTSSPTTMTSSVDSST-SSSSSLDSTTTTTTTT 60

Query: 61  SSSGSSADSPSISVAPGLAPDSYAQSPTTAASPTGS-SAETSRFFTNGFFG 108
               SSAD+ SISVAP  +PDS AQSPTTA SPTGS S ETSRFFTNGFFG
Sbjct: 61  ----SSADASSISVAPAFSPDSSAQSPTTATSPTGSPSGETSRFFTNGFFG 106

[Close]

BLAST of CSPI03G25930 vs. NCBI nr
Match: XP_008450206.1 (PREDICTED: cell wall protein DAN4-like [Cucumis melo])

HSP 1 Score: 105.9 bits (263), Expect = 2.2e-19
Identity = 80/109 (73.39%), Postives = 88/109 (80.73%), Query Frame = 0


Query: 1   MAYQSLAFLALIIVAVTGVVAQGPT---SSTPAPTTSSFDSSTPSSSSSLDSTTTTTTTS 60
           MAYQSLAFL LIIVA+TGVVAQ P+   +STPA  TSSFDSST SSSSSLDSTTT TTT+
Sbjct: 1   MAYQSLAFLTLIIVAITGVVAQAPSTSPTSTPATMTSSFDSST-SSSSSLDSTTTPTTTT 60

Query: 61  SSSGSSADSPSISVAPGLAPDSYAQSPTTAASPTGS-SAETSRFFTNGF 106
           +   SS D  SIS+AP  +PDS AQSPTTA SPTGS SAETSR F+NGF
Sbjct: 61  T---SSTDDSSISIAPAFSPDSSAQSPTTATSPTGSTSAETSRLFSNGF 105

The following BLAST results are available for this feature:

BLAST of CSPI03G25930 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G25930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LB81	1.3e-38	98.17	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G592680 PE=4 SV=1	[more]
A0A0A0L8Q5	5.8e-26	80.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G592670 PE=4 SV=1	[more]
A0A5D3C1H7	7.4e-21	76.58	Cell wall protein DAN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A1S3BPQ2	1.1e-19	73.39	cell wall protein DAN4-like OS=Cucumis melo OX=3656 GN=LOC103491867 PE=4 SV=1	[more]
A0A5D3C1I1	7.6e-18	72.48	Cell wall protein DAN4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of CSPI03G25930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031737565.1	4.4e-36	91.45	putative protein TPRXL [Cucumis sativus] >KAE8650787.1 hypothetical protein Csa_...	[more]
KAE8650786.1	6.4e-35	90.52	hypothetical protein Csa_017544 [Cucumis sativus]	[more]
KGN58213.1	1.2e-25	80.18	hypothetical protein Csa_017497 [Cucumis sativus]	[more]
KAA0056285.1	1.5e-20	76.58	cell wall protein DAN4-like [Cucumis melo var. makuwa] >TYK05215.1 cell wall pro...	[more]
XP_008450206.1	2.2e-19	73.39	PREDICTED: cell wall protein DAN4-like [Cucumis melo]	[more]

BLAST of CSPI03G25930 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..69
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..107

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G25930.1	CSPI03G25930.1	mRNA