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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGGAGCGGAAAATTTGTCCTGCAAGTGCACCTCTAATCAAGGACACCATAGATGTTGCGCCTGGATACATGCAATGGTACGTCAATATTAGTCGACGATACATCACAAAAAAGGTAGGAGCATCATACCATTTTTTGGTAAAGGTTTATTATTTAATTGAATCAATTAAAAATTGTTTAGTTACATAGTCTAATTGTAATTGTATGGACTGTAGGAAAAGTTTGACTAGTTGAAAATATCTAGTGTACCATCAAATGCGGTGACTAGAACGATAAAACTTGTTTTGCGTAATTTGACATCCATATATAGAGTAAGATATTTTGAAGGCGATGTTCCTGATGAAGAACAAGGTCATCCAACTAGACATGAGGATTTTTCATTTTAACCTCATTTTCAAAATCAGTACGCAACATCCTCATTTCACCAATACTCTCATGATGCCAACATCGACGACATTCGACTTCTTTTCGACTAACCATGACACGTTGAACATGGAGGAAGGTCAAACCTCACAATTTCATGTAGACGTGGGACAATCGACAAATGTTATAGGTCGTGATGATCGTGGACACTACGTGAACCAACAAGGTCGGATTTCGCGTAACTCTTCTACGCAAGATTAA mRNA sequence ATGGAGCGGAAAATTTGTCCTGCAAGTGCACCTCTAATCAAGGACACCATAGATGTTGCGCCTGGATACATGCAATGTACGCAACATCCTCATTTCACCAATACTCTCATGATGCCAACATCGACGACATTCGACTTCTTTTCGACTAACCATGACACGTTGAACATGGAGGAAGGTCAAACCTCACAATTTCATGTAGACGTGGGACAATCGACAAATGTTATAGGTCGTGATGATCGTGGACACTACGTGAACCAACAAGGTCGGATTTCGCGTAACTCTTCTACGCAAGATTAA Coding sequence (CDS) ATGGAGCGGAAAATTTGTCCTGCAAGTGCACCTCTAATCAAGGACACCATAGATGTTGCGCCTGGATACATGCAATGTACGCAACATCCTCATTTCACCAATACTCTCATGATGCCAACATCGACGACATTCGACTTCTTTTCGACTAACCATGACACGTTGAACATGGAGGAAGGTCAAACCTCACAATTTCATGTAGACGTGGGACAATCGACAAATGTTATAGGTCGTGATGATCGTGGACACTACGTGAACCAACAAGGTCGGATTTCGCGTAACTCTTCTACGCAAGATTAA Protein sequence MERKICPASAPLIKDTIDVAPGYMQCTQHPHFTNTLMMPTSTTFDFFSTNHDTLNMEEGQTSQFHVDVGQSTNVIGRDDRGHYVNQQGRISRNSSTQD*
Homology
BLAST of CSPI03G23520 vs. ExPASy TrEMBL
Match: A0A0A0L8B6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G426890 PE=4 SV=1) HSP 1 Score: 146.7 bits (369), Expect = 5.0e-32 Identity = 71/72 (98.61%), Postives = 71/72 (98.61%), Query Frame = 0
Query: 27 TQHPHFTNTLMMPTSTTFDFFSTNHDTLNMEEGQTSQFHVDVGQSTNVIGRDDRGHYVNQ 86
TQHPHFTNTLMMPTSTTFDFFSTNHDTLNMEEGQT QFHVDVGQSTNVIGRDDRGHYVNQ
Sbjct: 26 TQHPHFTNTLMMPTSTTFDFFSTNHDTLNMEEGQTPQFHVDVGQSTNVIGRDDRGHYVNQ 85
Query: 87 QGRISRNSSTQD 99
QGRISRNSSTQD
Sbjct: 86 QGRISRNSSTQD 97
BLAST of CSPI03G23520 vs. NCBI nr
Match: KAE8650707.1 (hypothetical protein Csa_010039 [Cucumis sativus]) HSP 1 Score: 197.6 bits (501), Expect = 5.1e-47 Identity = 95/98 (96.94%), Postives = 96/98 (97.96%), Query Frame = 0
Query: 1 MERKICPASAPLIKDTIDVAPGYMQCTQHPHFTNTLMMPTSTTFDFFSTNHDTLNMEEGQ 60
MERKICPASAPL+KDTIDVA GYMQCTQHPHFTNTLMMPTSTTFDFFSTNHDTLNMEEGQ
Sbjct: 1 MERKICPASAPLMKDTIDVASGYMQCTQHPHFTNTLMMPTSTTFDFFSTNHDTLNMEEGQ 60
Query: 61 TSQFHVDVGQSTNVIGRDDRGHYVNQQGRISRNSSTQD 99
T QFHVDVGQSTNVIGRDDRGHYVNQQGRISRNSSTQD
Sbjct: 61 TPQFHVDVGQSTNVIGRDDRGHYVNQQGRISRNSSTQD 98
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0L8B6 | 5.0e-32 | 98.61 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G426890 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAE8650707.1 | 5.1e-47 | 96.94 | hypothetical protein Csa_010039 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 75..98 |
Relationships
The following mRNA feature(s) are a part of this gene:
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