Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGTCACAATTCGAACAAGTTCTCTAGTCGTCCCAAATTGTCATTCTTCCACGTTCCACGCCCCTGTTCGTCTGCCCGAATTGATGCTCATGAGACTGCCAACTTTTCCTTTTTGCCTTCCCTTTCTTTAAAATTTCAAATGGCAGTTCAGTGGGACTCCATTATAAATACAACCCTACCCGAGTTCTTCTTCATTCATTCCTCATACACTCCACAAAACCTCTCAATCTCTCTACCTCTACAAATAGTTCTGAGCAAGTTCATTCATTGTTTCTATTCCTATTTCAGGCGAGTGCACGTTAGAAGTAGGGAGTTGTGTTAACCTTGGGGAGCAACCGATATTACAATTAGCACCATGGTCTGGTCGAATTTGCATTAGGGCAGTGATTCGTCATGGCGCAACAAGTCATTTTGATCATCATTTACGTTATTAACAATCTGAAAGTAAATTACAATAATAATCCAAACCAACAAAGTCCTACTAGACCTGTACAAATTAGAGCCACTTGACAGAACAAACTACAATCGCTTGTCCCAAAAAAAAAAAAAAAAACTTTTTTTAACAGCTCGAAGTCGACTACGTTTTCACCGTCAAACCACCAACCGATCCTCTAGCACCTTCTGATCCAAAATCATCCAGGAACCCCTTGCCGTCACTACCAACCGGGTAAAGAAAGCGTTTGCAACTGATTCCGAGAAGCACAAGAATGACAATATGACAGTTCGTGGACATTTGTTGAACCATATGTCAGATCTGATGTTTAACCTATTTGTAACCCAAGAATCTGCCAAAGAATCTGCCAAGGACATCTGGTGCATTCTAGAACCACATTATGGTGGAGACGACTCTGGGAGGAAGAAGTACGTTGTGGGAAAATGGCTACAGTTCCAGATGACAGATGACAAGCCAGTTGTGGAACAGATAAATAAGTATGAAAATCTGGTGGCAAATGTCCTATCAGAAGGTATGAAGATGTGTGAGATACTTCAAGCTATGTTTTGATGGAAAAATTCCCTCCCTCTTGTAGCGACTACCAAAATCACCTGAAGCACAAGAAGAAAGATCTGAAACTTCAAGATTTGATCAGCCACATGCGTACAGAAGAAGCCAACAAATTAAAAGATAAGTTAGCTTCCAAAAATGTAAATTCAGTTAATGCTAACTTGGTTGAGTCTTCCTCTGTAAACAGAGACAAGTCAAAACATGATAAAAGGCAGAATGGAAGAACCTCAGAAAAGGTACAGTTCAAGGCTCATGTGGGAAAAATCAAGAAAAATAAATTCATCTCTAATGTCTGCGAAAAGGAAGAACACAAATCCTACCATGCAATCAAAGGAAGGGGAGATCAAACAACCAAAAACCAACACCTCAAGCCAACCTTGCTGAACAAGATGATGAAGTCATAGCTGCTGTTGTGGAAGTCAACCTAATTAAAAACAAGACTGATTGGATCCTGGAAACTGAAGCCTCTAGACACTTCTGCACCAATCAAGAACTTCTTCATGACTACAAGGACATTGCTGATGGAGAATACGTGTTCATGGAAAACTCAGTCACCGTAGGAGTAATCGGGAAAGGGAAGGTTATTTTAAAATTAACTTCTGAAAAAACTTTATCCTTAAGTAATATTTTATATGTCCCTTCCCTATGCAGGAACTTAGTGTCTGGGAGTTTGTTGAATCGGGTGAGTCTTAA
mRNA sequence
ATGCGTCACAATTCGAACAAGTTCTCTAGTCGTCCCAAATTGTCATTCTTCCACGTTCCACGCCCCTGCGAGTGCACGTTAGAAGTAGGGAGTTGTGTTAACCTTGGGGAGCAACCGATATTACAATTAGCACCATGGTCTGGTCGAATTTGCATTAGGGCAGAACCCCTTGCCGTCACTACCAACCGGGTAAAGAAAGCGTTTGCAACTGATTCCGAGAAGCACAAGAATGACAATATGACAGTTCGTGGACATTTGTTGAACCATATGTCAGATCTGATGTTTAACCTATTTGTAACCCAAGAATCTGCCAAAGAATCTGCCAAGGACATCTGGTGCATTCTAGAACCACATTATGGTGGAGACGACTCTGGGAGGAAGAAGTACGTTGTGGGAAAATGGCTACAGTTCCAGATGACAGATGACAAGCCAGTTGTGGAACAGATAAATAACGACTACCAAAATCACCTGAAGCACAAGAAGAAAGATCTGAAACTTCAAGATTTGATCAGCCACATGCGTACAGAAGAAGCCAACAAATTAAAAGATAAGTTAGCTTCCAAAAATGTAAATTCAGTTAATGCTAACTTGGTTGAGTCTTCCTCTGTAAACAGAGACAAGTCAAAACATGATAAAAGGCAGAATGGAAGAACCTCAGAAAAGGGGAGATCAAACAACCAAAAACCAACACCTCAAGCCAACCTTGCTGAACAAGATGATGAAGTCATAGCTGCTGTTGTGGAAGTCAACCTAATTAAAAACAAGACTGATTGGATCCTGGAAACTGAAGCCTCTAGACACTTCTGCACCAATCAAGAACTTCTTCATGACTACAAGGACATTGCTGATGGAGAATACGTGTTCATGGAAAACTCAGTCACCGTAGGAGTAATCGGGAAAGGGAAGGAACTTAGTGTCTGGGAGTTTGTTGAATCGGGTGAGTCTTAA
Coding sequence (CDS)
ATGCGTCACAATTCGAACAAGTTCTCTAGTCGTCCCAAATTGTCATTCTTCCACGTTCCACGCCCCTGCGAGTGCACGTTAGAAGTAGGGAGTTGTGTTAACCTTGGGGAGCAACCGATATTACAATTAGCACCATGGTCTGGTCGAATTTGCATTAGGGCAGAACCCCTTGCCGTCACTACCAACCGGGTAAAGAAAGCGTTTGCAACTGATTCCGAGAAGCACAAGAATGACAATATGACAGTTCGTGGACATTTGTTGAACCATATGTCAGATCTGATGTTTAACCTATTTGTAACCCAAGAATCTGCCAAAGAATCTGCCAAGGACATCTGGTGCATTCTAGAACCACATTATGGTGGAGACGACTCTGGGAGGAAGAAGTACGTTGTGGGAAAATGGCTACAGTTCCAGATGACAGATGACAAGCCAGTTGTGGAACAGATAAATAACGACTACCAAAATCACCTGAAGCACAAGAAGAAAGATCTGAAACTTCAAGATTTGATCAGCCACATGCGTACAGAAGAAGCCAACAAATTAAAAGATAAGTTAGCTTCCAAAAATGTAAATTCAGTTAATGCTAACTTGGTTGAGTCTTCCTCTGTAAACAGAGACAAGTCAAAACATGATAAAAGGCAGAATGGAAGAACCTCAGAAAAGGGGAGATCAAACAACCAAAAACCAACACCTCAAGCCAACCTTGCTGAACAAGATGATGAAGTCATAGCTGCTGTTGTGGAAGTCAACCTAATTAAAAACAAGACTGATTGGATCCTGGAAACTGAAGCCTCTAGACACTTCTGCACCAATCAAGAACTTCTTCATGACTACAAGGACATTGCTGATGGAGAATACGTGTTCATGGAAAACTCAGTCACCGTAGGAGTAATCGGGAAAGGGAAGGAACTTAGTGTCTGGGAGTTTGTTGAATCGGGTGAGTCTTAA
Protein sequence
MRHNSNKFSSRPKLSFFHVPRPCECTLEVGSCVNLGEQPILQLAPWSGRICIRAEPLAVTTNRVKKAFATDSEKHKNDNMTVRGHLLNHMSDLMFNLFVTQESAKESAKDIWCILEPHYGGDDSGRKKYVVGKWLQFQMTDDKPVVEQINNDYQNHLKHKKKDLKLQDLISHMRTEEANKLKDKLASKNVNSVNANLVESSSVNRDKSKHDKRQNGRTSEKGRSNNQKPTPQANLAEQDDEVIAAVVEVNLIKNKTDWILETEASRHFCTNQELLHDYKDIADGEYVFMENSVTVGVIGKGKELSVWEFVESGES*
Homology
BLAST of CSPI03G23480 vs. ExPASy TrEMBL
Match:
A0A5D3CNJ2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold356G00110 PE=4 SV=1)
HSP 1 Score: 335.5 bits (859), Expect = 2.4e-88
Identity = 191/322 (59.32%), Postives = 216/322 (67.08%), Query Frame = 0
Query: 61 TNRVKKAFATDSEKHKNDNMTVRGHLLNHMSDLMFNLFVTQESAKESAKDIWCILEPHYG 120
T++VKK D EK+ DN TVRGHLLNHMSD MF+LFV Q +SAKDIW LE YG
Sbjct: 76 TDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQ----KSAKDIWSTLESRYG 135
Query: 121 GDDSGRKKYVVGKWLQFQMTDDKPVVEQIN------------------------------ 180
GDD+GRKKYVVGKWLQFQMTDDKPVVEQI+
Sbjct: 136 GDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLLEKFP 195
Query: 181 ---NDYQNHLKHKKKDLKLQDLISHMRTEEANKLKDKLASKNVNSVNANLVESSSVNRDK 240
NDY+NHLKHKKKDL+L +LISHMRTEEAN+LKDKLAS+N+NSVNANLVESS VNRD+
Sbjct: 196 PSWNDYRNHLKHKKKDLRLPELISHMRTEEANRLKDKLASQNLNSVNANLVESSFVNRDR 255
Query: 241 SKHDKRQNGRTSE----------------------------------KGRSNNQKPTPQA 300
+K +K G+ SE KGR +QKPTPQA
Sbjct: 256 TKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRP-SQKPTPQA 315
Query: 301 NLAEQDDEVIAAVVEVNLIKNKTDWILETEASRHFCTNQELLHDYKDIADGEYVFMENSV 316
NLAEQD E+IAA+VE NLI+NKTDWIL+T ASRHFCTN+ELLHDY+D ADGE VFM NS
Sbjct: 316 NLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSA 375
BLAST of CSPI03G23480 vs. ExPASy TrEMBL
Match:
A0A5D3DL36 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold943G00280 PE=4 SV=1)
HSP 1 Score: 333.6 bits (854), Expect = 9.2e-88
Identity = 190/322 (59.01%), Postives = 215/322 (66.77%), Query Frame = 0
Query: 61 TNRVKKAFATDSEKHKNDNMTVRGHLLNHMSDLMFNLFVTQESAKESAKDIWCILEPHYG 120
T++VKK D EK+ DN TVRGHLLNHMSD MF+LFV Q +SAKDIW LE YG
Sbjct: 76 TDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQ----KSAKDIWSTLESRYG 135
Query: 121 GDDSGRKKYVVGKWLQFQMTDDKPVVEQIN------------------------------ 180
GDD+GRKKYVVGKWLQFQM DDKPVVEQI+
Sbjct: 136 GDDAGRKKYVVGKWLQFQMNDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLLEKFP 195
Query: 181 ---NDYQNHLKHKKKDLKLQDLISHMRTEEANKLKDKLASKNVNSVNANLVESSSVNRDK 240
NDY+NHLKHKKKDL+L +LISHMRTEEAN+LKDKLAS+N+NSVNANLVESS VNRD+
Sbjct: 196 PSWNDYRNHLKHKKKDLRLPELISHMRTEEANRLKDKLASQNLNSVNANLVESSFVNRDR 255
Query: 241 SKHDKRQNGRTSE----------------------------------KGRSNNQKPTPQA 300
+K +K G+ SE KGR +QKPTPQA
Sbjct: 256 TKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRP-SQKPTPQA 315
Query: 301 NLAEQDDEVIAAVVEVNLIKNKTDWILETEASRHFCTNQELLHDYKDIADGEYVFMENSV 316
NLAEQD E+IAA+VE NLI+NKTDWIL+T ASRHFCTN+ELLHDY+D ADGE VFM NS
Sbjct: 316 NLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSA 375
BLAST of CSPI03G23480 vs. ExPASy TrEMBL
Match:
A0A5D3DSQ3 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G00930 PE=4 SV=1)
HSP 1 Score: 323.2 bits (827), Expect = 1.2e-84
Identity = 185/309 (59.87%), Postives = 208/309 (67.31%), Query Frame = 0
Query: 61 TNRVKKAFATDSEKHKNDNMTVRGHLLNHMSDLMFNLFVTQESAKESAKDIWCILEPHYG 120
T++VKK D EK+ DN TVRGHLLNHMSD MF+LFV Q +SAKDIW LE YG
Sbjct: 76 TDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQ----KSAKDIWSTLESRYG 135
Query: 121 GDDSGRKKYVVGKWLQFQMTDDKPVVEQIN------------------------------ 180
GDD+GRKKYVVGKWLQFQMTDDKPVVEQI+
Sbjct: 136 GDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLLEKFP 195
Query: 181 ---NDYQNHLKHKKKDLKLQDLISHMRTEEANKLKDKLASKNVNSVNANLVESSSVNRDK 240
NDY+NHLKHKKKDLKLQ+LISHMRTEEAN+LKDKLAS+N+NSVNANLVESS VNRD+
Sbjct: 196 PSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNSVNANLVESSFVNRDR 255
Query: 241 SKHDKRQNGRTSE----------------------------------KGRSNNQKPTPQA 300
+K +K G+ SE KGR +QKPTPQA
Sbjct: 256 TKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRP-SQKPTPQA 315
Query: 301 NLAEQDDEVIAAVVEVNLIKNKTDWILETEASRHFCTNQELLHDYKDIADGEYVFMENSV 303
NLAEQD E+IAA+VE NLI+NKTDWIL+T ASRHFCTN+ELLHDY+D ADGE VFM NS
Sbjct: 316 NLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSA 375
BLAST of CSPI03G23480 vs. ExPASy TrEMBL
Match:
A0A5D3C1A6 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00490 PE=4 SV=1)
HSP 1 Score: 322.8 bits (826), Expect = 1.6e-84
Identity = 189/325 (58.15%), Postives = 212/325 (65.23%), Query Frame = 0
Query: 45 PWSGRICIRAEPLAVTTNRVKKAFATDSEKHKNDNMTVRGHLLNHMSDLMFNLFVTQESA 104
P S RI A + T +VKK D EK+ DN TVR HLLNHMSD MF+LF+ Q
Sbjct: 63 PESSRIIYGA--VLAVTEQVKKDQVIDPEKYAKDNKTVRAHLLNHMSDPMFDLFIIQ--- 122
Query: 105 KESAKDIWCILEPHYGGDDSGRKKYVVGKWLQFQMTDDKPVVEQIN-------------- 164
+SAKDIW LE YGGDD+GRKKYVVGKWLQFQMTDDKPVVEQI+
Sbjct: 123 -KSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGM 182
Query: 165 -------------------NDYQNHLKHKKKDLKLQDLISHMRTEEANKLKDKLASKNVN 224
NDY+NHLKHKKKDLKLQ+LISHMRTEEANKLKDKLAS+N+N
Sbjct: 183 KMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANKLKDKLASQNLN 242
Query: 225 SVNANLVESSSVNRDKSKHDKRQNGRTSE------------------------------- 284
SVNANLVESS VNRD++K +K G+ SE
Sbjct: 243 SVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQC 302
Query: 285 ---KGRSNNQKPTPQANLAEQDDEVIAAVVEVNLIKNKTDWILETEASRHFCTNQELLHD 303
KGR +QKPTPQANLAEQD E+IAA+VE NLI+NKTDWIL+T ASRHFCTN+ELLHD
Sbjct: 303 NQRKGRP-SQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHD 362
BLAST of CSPI03G23480 vs. ExPASy TrEMBL
Match:
A0A5A7U9X9 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2606G00270 PE=4 SV=1)
HSP 1 Score: 322.8 bits (826), Expect = 1.6e-84
Identity = 184/309 (59.55%), Postives = 208/309 (67.31%), Query Frame = 0
Query: 61 TNRVKKAFATDSEKHKNDNMTVRGHLLNHMSDLMFNLFVTQESAKESAKDIWCILEPHYG 120
T++VKK D EK+ DN TVRGHLLNHMSD MF+LFV Q +SAKDIW LE YG
Sbjct: 76 TDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQ----KSAKDIWSTLESRYG 135
Query: 121 GDDSGRKKYVVGKWLQFQMTDDKPVVEQIN------------------------------ 180
GDD+GRKKYVVGKWLQFQMTDDKPV+EQI+
Sbjct: 136 GDDAGRKKYVVGKWLQFQMTDDKPVMEQIHEYENLVANVLSEGMKMCEILQANVLLEKFP 195
Query: 181 ---NDYQNHLKHKKKDLKLQDLISHMRTEEANKLKDKLASKNVNSVNANLVESSSVNRDK 240
NDY+NHLKHKKKDLKLQ+LISHMRTEEAN+LKDKLAS+N+NSVNANLVESS VNRD+
Sbjct: 196 PSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNSVNANLVESSFVNRDR 255
Query: 241 SKHDKRQNGRTSE----------------------------------KGRSNNQKPTPQA 300
+K +K G+ SE KGR +QKPTPQA
Sbjct: 256 TKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRP-SQKPTPQA 315
Query: 301 NLAEQDDEVIAAVVEVNLIKNKTDWILETEASRHFCTNQELLHDYKDIADGEYVFMENSV 303
NLAEQD E+IAA+VE NLI+NKTDWIL+T ASRHFCTN+ELLHDY+D ADGE VFM NS
Sbjct: 316 NLAEQDSEIIAAIVEANLIENKTDWILDTRASRHFCTNRELLHDYEDTADGECVFMGNSA 375
BLAST of CSPI03G23480 vs. NCBI nr
Match:
TYK11996.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 335.5 bits (859), Expect = 5.0e-88
Identity = 191/322 (59.32%), Postives = 216/322 (67.08%), Query Frame = 0
Query: 61 TNRVKKAFATDSEKHKNDNMTVRGHLLNHMSDLMFNLFVTQESAKESAKDIWCILEPHYG 120
T++VKK D EK+ DN TVRGHLLNHMSD MF+LFV Q +SAKDIW LE YG
Sbjct: 76 TDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQ----KSAKDIWSTLESRYG 135
Query: 121 GDDSGRKKYVVGKWLQFQMTDDKPVVEQIN------------------------------ 180
GDD+GRKKYVVGKWLQFQMTDDKPVVEQI+
Sbjct: 136 GDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLLEKFP 195
Query: 181 ---NDYQNHLKHKKKDLKLQDLISHMRTEEANKLKDKLASKNVNSVNANLVESSSVNRDK 240
NDY+NHLKHKKKDL+L +LISHMRTEEAN+LKDKLAS+N+NSVNANLVESS VNRD+
Sbjct: 196 PSWNDYRNHLKHKKKDLRLPELISHMRTEEANRLKDKLASQNLNSVNANLVESSFVNRDR 255
Query: 241 SKHDKRQNGRTSE----------------------------------KGRSNNQKPTPQA 300
+K +K G+ SE KGR +QKPTPQA
Sbjct: 256 TKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRP-SQKPTPQA 315
Query: 301 NLAEQDDEVIAAVVEVNLIKNKTDWILETEASRHFCTNQELLHDYKDIADGEYVFMENSV 316
NLAEQD E+IAA+VE NLI+NKTDWIL+T ASRHFCTN+ELLHDY+D ADGE VFM NS
Sbjct: 316 NLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSA 375
BLAST of CSPI03G23480 vs. NCBI nr
Match:
TYK24060.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 333.6 bits (854), Expect = 1.9e-87
Identity = 190/322 (59.01%), Postives = 215/322 (66.77%), Query Frame = 0
Query: 61 TNRVKKAFATDSEKHKNDNMTVRGHLLNHMSDLMFNLFVTQESAKESAKDIWCILEPHYG 120
T++VKK D EK+ DN TVRGHLLNHMSD MF+LFV Q +SAKDIW LE YG
Sbjct: 76 TDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQ----KSAKDIWSTLESRYG 135
Query: 121 GDDSGRKKYVVGKWLQFQMTDDKPVVEQIN------------------------------ 180
GDD+GRKKYVVGKWLQFQM DDKPVVEQI+
Sbjct: 136 GDDAGRKKYVVGKWLQFQMNDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLLEKFP 195
Query: 181 ---NDYQNHLKHKKKDLKLQDLISHMRTEEANKLKDKLASKNVNSVNANLVESSSVNRDK 240
NDY+NHLKHKKKDL+L +LISHMRTEEAN+LKDKLAS+N+NSVNANLVESS VNRD+
Sbjct: 196 PSWNDYRNHLKHKKKDLRLPELISHMRTEEANRLKDKLASQNLNSVNANLVESSFVNRDR 255
Query: 241 SKHDKRQNGRTSE----------------------------------KGRSNNQKPTPQA 300
+K +K G+ SE KGR +QKPTPQA
Sbjct: 256 TKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRP-SQKPTPQA 315
Query: 301 NLAEQDDEVIAAVVEVNLIKNKTDWILETEASRHFCTNQELLHDYKDIADGEYVFMENSV 316
NLAEQD E+IAA+VE NLI+NKTDWIL+T ASRHFCTN+ELLHDY+D ADGE VFM NS
Sbjct: 316 NLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSA 375
BLAST of CSPI03G23480 vs. NCBI nr
Match:
TYK26791.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 323.2 bits (827), Expect = 2.6e-84
Identity = 185/309 (59.87%), Postives = 208/309 (67.31%), Query Frame = 0
Query: 61 TNRVKKAFATDSEKHKNDNMTVRGHLLNHMSDLMFNLFVTQESAKESAKDIWCILEPHYG 120
T++VKK D EK+ DN TVRGHLLNHMSD MF+LFV Q +SAKDIW LE YG
Sbjct: 76 TDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQ----KSAKDIWSTLESRYG 135
Query: 121 GDDSGRKKYVVGKWLQFQMTDDKPVVEQIN------------------------------ 180
GDD+GRKKYVVGKWLQFQMTDDKPVVEQI+
Sbjct: 136 GDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGMKMCEILQANVLLEKFP 195
Query: 181 ---NDYQNHLKHKKKDLKLQDLISHMRTEEANKLKDKLASKNVNSVNANLVESSSVNRDK 240
NDY+NHLKHKKKDLKLQ+LISHMRTEEAN+LKDKLAS+N+NSVNANLVESS VNRD+
Sbjct: 196 PSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNSVNANLVESSFVNRDR 255
Query: 241 SKHDKRQNGRTSE----------------------------------KGRSNNQKPTPQA 300
+K +K G+ SE KGR +QKPTPQA
Sbjct: 256 TKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRP-SQKPTPQA 315
Query: 301 NLAEQDDEVIAAVVEVNLIKNKTDWILETEASRHFCTNQELLHDYKDIADGEYVFMENSV 303
NLAEQD E+IAA+VE NLI+NKTDWIL+T ASRHFCTN+ELLHDY+D ADGE VFM NS
Sbjct: 316 NLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHDYEDTADGECVFMGNSA 375
BLAST of CSPI03G23480 vs. NCBI nr
Match:
KAA0051006.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 322.8 bits (826), Expect = 3.3e-84
Identity = 184/309 (59.55%), Postives = 208/309 (67.31%), Query Frame = 0
Query: 61 TNRVKKAFATDSEKHKNDNMTVRGHLLNHMSDLMFNLFVTQESAKESAKDIWCILEPHYG 120
T++VKK D EK+ DN TVRGHLLNHMSD MF+LFV Q +SAKDIW LE YG
Sbjct: 76 TDQVKKDQVIDPEKYAKDNKTVRGHLLNHMSDPMFDLFVVQ----KSAKDIWSTLESRYG 135
Query: 121 GDDSGRKKYVVGKWLQFQMTDDKPVVEQIN------------------------------ 180
GDD+GRKKYVVGKWLQFQMTDDKPV+EQI+
Sbjct: 136 GDDAGRKKYVVGKWLQFQMTDDKPVMEQIHEYENLVANVLSEGMKMCEILQANVLLEKFP 195
Query: 181 ---NDYQNHLKHKKKDLKLQDLISHMRTEEANKLKDKLASKNVNSVNANLVESSSVNRDK 240
NDY+NHLKHKKKDLKLQ+LISHMRTEEAN+LKDKLAS+N+NSVNANLVESS VNRD+
Sbjct: 196 PSWNDYRNHLKHKKKDLKLQELISHMRTEEANRLKDKLASQNLNSVNANLVESSFVNRDR 255
Query: 241 SKHDKRQNGRTSE----------------------------------KGRSNNQKPTPQA 300
+K +K G+ SE KGR +QKPTPQA
Sbjct: 256 TKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQCNQRKGRP-SQKPTPQA 315
Query: 301 NLAEQDDEVIAAVVEVNLIKNKTDWILETEASRHFCTNQELLHDYKDIADGEYVFMENSV 303
NLAEQD E+IAA+VE NLI+NKTDWIL+T ASRHFCTN+ELLHDY+D ADGE VFM NS
Sbjct: 316 NLAEQDSEIIAAIVEANLIENKTDWILDTRASRHFCTNRELLHDYEDTADGECVFMGNSA 375
BLAST of CSPI03G23480 vs. NCBI nr
Match:
TYK05597.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 322.8 bits (826), Expect = 3.3e-84
Identity = 189/325 (58.15%), Postives = 212/325 (65.23%), Query Frame = 0
Query: 45 PWSGRICIRAEPLAVTTNRVKKAFATDSEKHKNDNMTVRGHLLNHMSDLMFNLFVTQESA 104
P S RI A + T +VKK D EK+ DN TVR HLLNHMSD MF+LF+ Q
Sbjct: 63 PESSRIIYGA--VLAVTEQVKKDQVIDPEKYAKDNKTVRAHLLNHMSDPMFDLFIIQ--- 122
Query: 105 KESAKDIWCILEPHYGGDDSGRKKYVVGKWLQFQMTDDKPVVEQIN-------------- 164
+SAKDIW LE YGGDD+GRKKYVVGKWLQFQMTDDKPVVEQI+
Sbjct: 123 -KSAKDIWSTLESRYGGDDAGRKKYVVGKWLQFQMTDDKPVVEQIHEYENLVANVLSEGM 182
Query: 165 -------------------NDYQNHLKHKKKDLKLQDLISHMRTEEANKLKDKLASKNVN 224
NDY+NHLKHKKKDLKLQ+LISHMRTEEANKLKDKLAS+N+N
Sbjct: 183 KMCEILQANVLLEKFPPSWNDYRNHLKHKKKDLKLQELISHMRTEEANKLKDKLASQNLN 242
Query: 225 SVNANLVESSSVNRDKSKHDKRQNGRTSE------------------------------- 284
SVNANLVESS VNRD++K +K G+ SE
Sbjct: 243 SVNANLVESSFVNRDRTKQEKGHKGKNSEKRQFKTTGGQIKKKKLVCYVCGKEGHKSYQC 302
Query: 285 ---KGRSNNQKPTPQANLAEQDDEVIAAVVEVNLIKNKTDWILETEASRHFCTNQELLHD 303
KGR +QKPTPQANLAEQD E+IAA+VE NLI+NKTDWIL+T ASRHFCTN+ELLHD
Sbjct: 303 NQRKGRP-SQKPTPQANLAEQDSEIIAAIVEANLIENKTDWILDTGASRHFCTNRELLHD 362
BLAST of CSPI03G23480 vs. TAIR 10
Match:
AT4G00980.1 (zinc knuckle (CCHC-type) family protein )
HSP 1 Score: 45.4 bits (106), Expect = 9.6e-05
Identity = 26/86 (30.23%), Postives = 50/86 (58.14%), Query Frame = 0
Query: 64 VKKAFATDSEKHKNDNMTVRGHLLNHMSDLMFNLFVTQESAKESAKDIWCILEPHYGGDD 123
+ +A AT +K D+ HL+N +SD +L+ + AK++W L+ Y D+
Sbjct: 243 ITRADAT-GKKWLRDDYLCYTHLMNSLSD---HLYRRYSQKFKHAKELWDELKWVYQCDE 302
Query: 124 SGRKKYVVGKWLQFQMTDDKPVVEQI 150
S K+ V K+++F+M +++P++EQ+
Sbjct: 303 SKSKRSQVRKYIEFRMVEERPILEQV 324
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5D3CNJ2 | 2.4e-88 | 59.32 | Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5D3DL36 | 9.2e-88 | 59.01 | Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5D3DSQ3 | 1.2e-84 | 59.87 | Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5D3C1A6 | 1.6e-84 | 58.15 | Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
| A0A5A7U9X9 | 1.6e-84 | 59.55 | Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| TYK11996.1 | 5.0e-88 | 59.32 | ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| TYK24060.1 | 1.9e-87 | 59.01 | ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| TYK26791.1 | 2.6e-84 | 59.87 | ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| KAA0051006.1 | 3.3e-84 | 59.55 | ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| TYK05597.1 | 3.3e-84 | 58.15 | ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT4G00980.1 | 9.6e-05 | 30.23 | zinc knuckle (CCHC-type) family protein | [more] |
