CSPI03G22300 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G22300
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ty3/gypsy retrotransposon protein
Location	Chr3: 18740602 .. 18741253 (-)
RNA-Seq Expression	CSPI03G22300
Synteny	CSPI03G22300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAACCAAGTAACCATATCAGACAAATTTCCTATCCCAATGATAGAAGAACTGCTGGATGAATTACATGGGGCCACGGTTTTCTCGAAATTAGATATGAAGTCCGGTTACCATCAAATAAGGATGCAGAAGGAAGATGTTGAGAAGACCGCGTTCAGAACACATGAGGGTCACTATGAATTTCTGGTAATGCCCTTCGGTCTTACAAACGCACCAGCCACCTTCCAGTCCTTGATGAATCAGGTATTCAAACCTTTTTAAAGAAGGTGTGTATTGGTGTTCTTCCAGTCCTTGATGAATCAGGTATTCAAACCTATGTTGACAACAGATTTCGAGTTACAACTATGGCCAGAACAGGTATTGGGAATTCGCTGGAACAAAGAATTGGGAGCTAACGAATGGCTAGTCAAGTGGAAGAATTTACCAGAAACTGAAGCCACATGGGAAGCTGTCTATCAAATGAATCAACAGTTTCCCACATTCCACCTTGAGGACAAGGTGAATTTGGAACCGAGGGGTGTTGTGAGACCCCCAATCATACATACGTATGTTAGGAAGGGTAAGAAGGGAAACTCACCAACATGTAAGGAGAGAGAATGAGTGGGAAATAAAAGAATGTGCAGGTGGGTCCCACTGGGTAGGAATTTGAGGGTG

mRNA sequence

CAACCAAGTAACCATATCAGACAAATTTCCTATCCCAATGATAGAAGAACTGCTGGATGAATTACATGGGGCCACGGTTTTCTCGAAATTAGATATGAAGTCCGGTTACCATCAAATAAGGATGCAGAAGGAAGATGTTGAGAAGACCGCGTTCAGAACACATGAGGGTCACTATGAATTTCTGGTAATGCCCTTCGGTCTTACAAACGCACCAGCCACCTTCCAGTCCTTGATGAATCAGGTATTCAAACCTATGTTGACAACAGATTTCGAGTTACAACTATGGCCAGAACAGGTATTGGGAATTCGCTGGAACAAAGAATTGGGAGCTAACGAATGGCTAGTCAAGTGGAAGAATTTACCAGAAACTGAAGCCACATGGGAAGCTGTCTATCAAATGAATCAACAGTTTCCCACATTCCACCTTGAGGACAAGGTGAATTTGGAACCGAGGGGTGTTGTGAGACCCCCAATCATACATACGTATGTTAGGAAGGGTAAGAAGGGAAACTCACCAACATGTAAGGAGAGAGAATGAGTGGGAAATAAAAGAATGTGCAGGTGGGTCCCACTGGGTAGGAATTTGAGGGTG

Coding sequence (CDS)

ATGATAGAAGAACTGCTGGATGAATTACATGGGGCCACGGTTTTCTCGAAATTAGATATGAAGTCCGGTTACCATCAAATAAGGATGCAGAAGGAAGATGTTGAGAAGACCGCGTTCAGAACACATGAGGGTCACTATGAATTTCTGGTAATGCCCTTCGGTCTTACAAACGCACCAGCCACCTTCCAGTCCTTGATGAATCAGGTATTCAAACCTATGTTGACAACAGATTTCGAGTTACAACTATGGCCAGAACAGGTATTGGGAATTCGCTGGAACAAAGAATTGGGAGCTAACGAATGGCTAGTCAAGTGGAAGAATTTACCAGAAACTGAAGCCACATGGGAAGCTGTCTATCAAATGAATCAACAGTTTCCCACATTCCACCTTGAGGACAAGGTGAATTTGGAACCGAGGGGTGTTGTGAGACCCCCAATCATACATACGTATGTTAGGAAGGGTAAGAAGGGAAACTCACCAACATGTAAGGAGAGAGAATGA

Protein sequence

MIEELLDELHGATVFSKLDMKSGYHQIRMQKEDVEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLEDKVNLEPRGVVRPPIIHTYVRKGKKGNSPTCKERE*

Homology

[Close]

BLAST of CSPI03G22300 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.6e-16
Identity = 37/73 (50.68%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 2   IEELLDELHGATVFSKLDMKSGYHQIRMQKEDVEKTAFRTHEGHYEFLVMPFGLTNAPAT 61
           ++E+L +L     F+ +D+  G+HQI M +E + KTAF T  GHYE+L MPFGL NAPAT
Sbjct: 284 MDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAPAT 343

Query: 62  FQSLMNQVFKPML 75
           FQ  MN + +P+L
Sbjct: 344 FQRCMNNILRPLL 356

[Close]

BLAST of CSPI03G22300 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.6e-16
Identity = 38/73 (52.05%), Postives = 50/73 (68.49%), Query Frame = 0


Query: 2   IEELLDELHGATVFSKLDMKSGYHQIRMQKEDVEKTAFRTHEGHYEFLVMPFGLTNAPAT 61
           ++E+L +L     F+ +D+  G+HQI M  E V KTAF T  GHYE+L MPFGL NAPAT
Sbjct: 285 MDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPAT 344

Query: 62  FQSLMNQVFKPML 75
           FQ  MN + +P+L
Sbjct: 345 FQRCMNDILRPLL 357

[Close]

BLAST of CSPI03G22300 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.4e-14
Identity = 35/69 (50.72%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 1   MIEELLDELHGATVFSKLDMKSGYHQIRMQKEDVEKTAFRTHEGHYEFLVMPFGLTNAPA 60
           +IE+LL ++ G+T+F+KLD+KS YH IR++K D  K AFR   G +E+LVMP+G++ APA
Sbjct: 484 LIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPA 543

Query: 61  TFQSLMNQV 70
            FQ  +N +
Sbjct: 544 HFQYFINTI 552

[Close]

BLAST of CSPI03G22300 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.4e-14
Identity = 35/69 (50.72%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 1   MIEELLDELHGATVFSKLDMKSGYHQIRMQKEDVEKTAFRTHEGHYEFLVMPFGLTNAPA 60
           +IE+LL ++ G+T+F+KLD+KS YH IR++K D  K AFR   G +E+LVMP+G++ APA
Sbjct: 484 LIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPA 543

Query: 61  TFQSLMNQV 70
            FQ  +N +
Sbjct: 544 HFQYFINTI 552

[Close]

BLAST of CSPI03G22300 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.4e-14
Identity = 35/69 (50.72%), Postives = 52/69 (75.36%), Query Frame = 0


Query: 1   MIEELLDELHGATVFSKLDMKSGYHQIRMQKEDVEKTAFRTHEGHYEFLVMPFGLTNAPA 60
           +IE+LL ++ G+T+F+KLD+KS YH IR++K D  K AFR   G +E+LVMP+G++ APA
Sbjct: 484 LIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPA 543

Query: 61  TFQSLMNQV 70
            FQ  +N +
Sbjct: 544 HFQYFINTI 552

[Close]

BLAST of CSPI03G22300 vs. ExPASy TrEMBL
Match: A0A5D3E0H6 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00020 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 4.6e-38
Identity = 72/95 (75.79%), Postives = 84/95 (88.42%), Query Frame = 0


Query: 72  PMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLE 131
           PMLT DFELQLWPE VLGIRW+KELGANEWL+KW+ LPE+EATWE+ YQMNQQFP+FHLE
Sbjct: 90  PMLTEDFELQLWPETVLGIRWSKELGANEWLIKWQGLPESEATWESTYQMNQQFPSFHLE 149

Query: 132 DKVNLEPRGVVRPPIIHTYVRKGKKGNSPTCKERE 167
           DKVN+EPRG+VRPPIIHTY R+G+  N    K++E
Sbjct: 150 DKVNVEPRGIVRPPIIHTYKRRGRMVNKHDSKDKE 184

[Close]

BLAST of CSPI03G22300 vs. ExPASy TrEMBL
Match: A0A5A7TRS1 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G00020 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 3.0e-37
Identity = 71/95 (74.74%), Postives = 83/95 (87.37%), Query Frame = 0


Query: 72  PMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLE 131
           PMLT DFELQLWPE VLGIRW+KELGANEWL+KW+ LP +EATWE+ YQMNQQFP+FHLE
Sbjct: 90  PMLTEDFELQLWPETVLGIRWSKELGANEWLIKWQGLPGSEATWESTYQMNQQFPSFHLE 149

Query: 132 DKVNLEPRGVVRPPIIHTYVRKGKKGNSPTCKERE 167
           DKVN+EPRG+VRPPIIHTY R+G+  N    K++E
Sbjct: 150 DKVNVEPRGIVRPPIIHTYKRRGRMVNKHDSKDKE 184

[Close]

BLAST of CSPI03G22300 vs. ExPASy TrEMBL
Match: A0A5A7U9P7 (Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001430 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.5e-36
Identity = 69/85 (81.18%), Postives = 81/85 (95.29%), Query Frame = 0


Query: 72  PMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLE 131
           PMLT +FELQLWPE VLGIRWNKELGANEWL+KW++LPE+EATWE+VYQMNQQFP+FHLE
Sbjct: 206 PMLTENFELQLWPENVLGIRWNKELGANEWLIKWQSLPESEATWESVYQMNQQFPSFHLE 265

Query: 132 DKVNLEPRGVVRPPIIHTYVRKGKK 157
           DKVN+EPRG+VRPPI+HTY R+ +K
Sbjct: 266 DKVNVEPRGIVRPPILHTYRRRDRK 290

[Close]

BLAST of CSPI03G22300 vs. ExPASy TrEMBL
Match: A0A5A7VAR2 (Chromo domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold44083G00010 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.5e-36
Identity = 72/85 (84.71%), Postives = 79/85 (92.94%), Query Frame = 0


Query: 72  PMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLE 131
           PMLT +FELQLWPE VL IRWNKELGANEWLVKWK LPE EATWE+V+Q+NQQFPTFHLE
Sbjct: 60  PMLTEEFELQLWPETVLEIRWNKELGANEWLVKWKGLPEAEATWESVFQINQQFPTFHLE 119

Query: 132 DKVNLEPRGVVRPPIIHTYVRKGKK 157
           DKVNLEPRG+VRPPII+TY R+GKK
Sbjct: 120 DKVNLEPRGIVRPPIINTYKRRGKK 144

[Close]

BLAST of CSPI03G22300 vs. ExPASy TrEMBL
Match: A0A5D3BBH7 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold549G00100 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 1.9e-36
Identity = 71/97 (73.20%), Postives = 83/97 (85.57%), Query Frame = 0


Query: 68   QVFKPMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPT 127
            Q+ +P LT +FELQLWPE VLGIRW+ ELGANEWLVKWK LP++EATWE+VY MNQQFP+
Sbjct: 1430 QIQQPQLTAEFELQLWPETVLGIRWSPELGANEWLVKWKGLPDSEATWESVYSMNQQFPS 1489

Query: 128  FHLEDKVNLEPRGVVRPPIIHTYVRKGKKGNSPTCKE 165
            FHLEDKV+LEPRG+VRPPII+ Y R+GKKG     KE
Sbjct: 1490 FHLEDKVSLEPRGIVRPPIINVYKRRGKKGKLQDSKE 1526

[Close]

BLAST of CSPI03G22300 vs. NCBI nr
Match: KAE8637561.1 (hypothetical protein CSA_017659 [Cucumis sativus])

HSP 1 Score: 201.4 bits (511), Expect = 5.9e-48
Identity = 91/96 (94.79%), Postives = 93/96 (96.88%), Query Frame = 0


Query: 71   KPMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHL 130
            +PMLTTDFELQLWPEQVLGIRWNK+LGANEWLVKWKNLPETEATWE VYQMNQQFPTFHL
Sbjct: 1053 QPMLTTDFELQLWPEQVLGIRWNKDLGANEWLVKWKNLPETEATWEVVYQMNQQFPTFHL 1112

Query: 131  EDKVNLEPRGVVRPPIIHTYVRKGKKGNSPTCKERE 167
            EDKVNLEPRGVVRPPIIHTYVRKGKKGNSPT  ERE
Sbjct: 1113 EDKVNLEPRGVVRPPIIHTYVRKGKKGNSPTSNERE 1148

[Close]

BLAST of CSPI03G22300 vs. NCBI nr
Match: KAE8637561.1 (hypothetical protein CSA_017659 [Cucumis sativus])

HSP 1 Score: 145.6 bits (366), Expect = 3.9e-31
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 1   MIEELLDELHGATVFSKLDMKSGYHQIRMQKEDVEKTAFRTHEGHYEFLVMPFGLTNAPA 60
           +IEELLDELHGATVFSKLDMKS YHQIRMQ+EDVEKTAFRTHEGHYEFLVMPFGLTNAPA
Sbjct: 287 VIEELLDELHGATVFSKLDMKSDYHQIRMQEEDVEKTAFRTHEGHYEFLVMPFGLTNAPA 346

Query: 61  TFQSLMNQVFKPML 75
           TFQSLMNQVFKP L
Sbjct: 347 TFQSLMNQVFKPFL 360

HSP 2 Score: 167.5 bits (423), Expect = 9.5e-38
Identity = 72/95 (75.79%), Postives = 84/95 (88.42%), Query Frame = 0


Query: 72  PMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLE 131
           PMLT DFELQLWPE VLGIRW+KELGANEWL+KW+ LPE+EATWE+ YQMNQQFP+FHLE
Sbjct: 90  PMLTEDFELQLWPETVLGIRWSKELGANEWLIKWQGLPESEATWESTYQMNQQFPSFHLE 149

Query: 132 DKVNLEPRGVVRPPIIHTYVRKGKKGNSPTCKERE 167
           DKVN+EPRG+VRPPIIHTY R+G+  N    K++E
Sbjct: 150 DKVNVEPRGIVRPPIIHTYKRRGRMVNKHDSKDKE 184

[Close]

BLAST of CSPI03G22300 vs. NCBI nr
Match: KGN62557.2 (hypothetical protein Csa_018739 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 1.6e-37
Identity = 75/89 (84.27%), Postives = 82/89 (92.13%), Query Frame = 0


Query: 68  QVFKPMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPT 127
           Q+ +P+LT +FELQL PE VLGIRWNK+LGANEWLVKWK LPE EATWEAVYQMNQQFPT
Sbjct: 898 QIQQPVLTEEFELQLQPETVLGIRWNKDLGANEWLVKWKELPENEATWEAVYQMNQQFPT 957

Query: 128 FHLEDKVNLEPRGVVRPPIIHTYVRKGKK 157
           FHLEDKVNLEPRG+VRPPIIHTY RKG+K
Sbjct: 958 FHLEDKVNLEPRGIVRPPIIHTYRRKGRK 986

[Close]

BLAST of CSPI03G22300 vs. NCBI nr
Match: KGN62557.2 (hypothetical protein Csa_018739 [Cucumis sativus])

HSP 1 Score: 142.9 bits (359), Expect = 2.5e-30
Identity = 68/74 (91.89%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 1   MIEELLDELHGATVFSKLDMKSGYHQIRMQKEDVEKTAFRTHEGHYEFLVMPFGLTNAPA 60
           +IEELLDELHGATVFSKLD+KSGYHQIRM++EDVEKTAFRTHEGHYEFLVMPFGLTNAPA
Sbjct: 135 VIEELLDELHGATVFSKLDLKSGYHQIRMKEEDVEKTAFRTHEGHYEFLVMPFGLTNAPA 194

Query: 61  TFQSLMNQVFKPML 75
           TFQSLMN VFKP L
Sbjct: 195 TFQSLMNLVFKPFL 208

HSP 2 Score: 164.9 bits (416), Expect = 6.2e-37
Identity = 71/95 (74.74%), Postives = 83/95 (87.37%), Query Frame = 0


Query: 72  PMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHLE 131
           PMLT DFELQLWPE VLGIRW+KELGANEWL+KW+ LP +EATWE+ YQMNQQFP+FHLE
Sbjct: 90  PMLTEDFELQLWPETVLGIRWSKELGANEWLIKWQGLPGSEATWESTYQMNQQFPSFHLE 149

Query: 132 DKVNLEPRGVVRPPIIHTYVRKGKKGNSPTCKERE 167
           DKVN+EPRG+VRPPIIHTY R+G+  N    K++E
Sbjct: 150 DKVNVEPRGIVRPPIIHTYKRRGRMVNKHDSKDKE 184

[Close]

BLAST of CSPI03G22300 vs. NCBI nr
Match: KAE8637598.1 (hypothetical protein CSA_022681 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 6.2e-37
Identity = 70/86 (81.40%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 71   KPMLTTDFELQLWPEQVLGIRWNKELGANEWLVKWKNLPETEATWEAVYQMNQQFPTFHL 130
            +P+LT DFELQLWPE VLGIRWNKELG NEWL+KWKNLP++EATWE+VY +NQQFP FHL
Sbjct: 961  QPILTEDFELQLWPENVLGIRWNKELGGNEWLIKWKNLPDSEATWESVYLLNQQFPQFHL 1020

Query: 131  EDKVNLEPRGVVRPPIIHTYVRKGKK 157
            EDKVNLEPRG+VRPPIIHTY R+G+K
Sbjct: 1021 EDKVNLEPRGIVRPPIIHTYQRRGRK 1046

The following BLAST results are available for this feature:

BLAST of CSPI03G22300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	3.6e-16	50.68	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	3.6e-16	52.05	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P0CT41	3.4e-14	50.72	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	3.4e-14	50.72	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	3.4e-14	50.72	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of CSPI03G22300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E0H6	4.6e-38	75.79	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TRS1	3.0e-37	74.74	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7U9P7	1.5e-36	81.18	Retrotransposable element Tf2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A5A7VAR2	1.5e-36	84.71	Chromo domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27...	[more]
A0A5D3BBH7	1.9e-36	73.20	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

Pages

BLAST of CSPI03G22300 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8637561.1	5.9e-48	94.79	hypothetical protein CSA_017659 [Cucumis sativus]	[more]
KAE8637561.1	3.9e-31	94.59	hypothetical protein CSA_017659 [Cucumis sativus]	[more]
KGN62557.2	1.6e-37	84.27	hypothetical protein Csa_018739 [Cucumis sativus]	[more]
KGN62557.2	2.5e-30	91.89	hypothetical protein Csa_018739 [Cucumis sativus]	[more]
KAE8637598.1	6.2e-37	81.40	hypothetical protein CSA_022681 [Cucumis sativus]	[more]

Pages

BLAST of CSPI03G22300 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	2.40.50.40		coord: 84..131 e-value: 7.3E-7 score: 30.8
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 25..57 e-value: 8.0E-30 score: 105.7
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 1..76
None	No IPR available	PANTHER	PTHR24559:SF319	SUBFAMILY NOT NAMED	coord: 1..76
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..74 e-value: 1.21002E-40 score: 133.104
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 2..73 e-value: 8.0E-30 score: 105.7
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 4..75 e-value: 4.9E-13 score: 49.1
IPR023780	Chromo domain	PFAM	PF00385	Chromo	coord: 85..117 e-value: 4.3E-7 score: 29.7
IPR000953	Chromo/chromo shadow domain	PROSITE	PS50013	CHROMO_2	coord: 82..116 score: 10.403601
IPR016197	Chromo-like domain superfamily	SUPERFAMILY	54160	Chromo domain-like	coord: 71..127
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G22300.1	CSPI03G22300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010158	abaxial cell fate specification
biological_process	GO:0015074	DNA integration
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0000976	transcription cis-regulatory region binding