CSPI03G21790 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G21790
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Double-stranded RNA-binding protein 4-like isoform X3
Location	Chr3: 18197221 .. 18199325 (-)
RNA-Seq Expression	CSPI03G21790
Synteny	CSPI03G21790

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTTAACCCTTCAACGTCATTAATATCTCGTCGTCAGGATTAAGAAACCCTGATCATCCTTTCACAGTGAAGAGAGCGAAAATCACCCGACATTCGTTCATTCATTCATAGCCACTGACTGATCGTTCCCATTTCACCAATTTGTTCTCCTCCAATTCCATTACCCTCGATAATAATCGACGATTATGGAAGAATCCGGTACAGTTGAAGCAGGTGCACCGCAACAATCTCCATTCCCGTCCGACTCAGTTCCAACTGTTGTTACCCCTCCTATTCCGGTAGAAAACTCCAATACTTTTCAGCCTCAACCAGATATTCATCCTCCATCTGTTTTACCGGACTTAGTTCCGATTCCAAGTGCGGCTCCAGCTCCGATTCCGTCTCCTAATCTCTCTGATCATACTCGTAAGTGTATGACAATGTTGCCCATCGTTCCGTTGAGGATGCATTTTTTGTTCTTGGTGTTTGGTTATAATTGTTTAGTGTTTTCGTTTCAGCAAATATCTGCCATATTAGATGGATTTCCTCTACATTTCGTGTACTTAAGTTCCCCATCTGTTTTTGTTTTCTGTTAGAGAGAGAAGCAATTGCGAGCCATTTGTGTGTGTTGAAAGAATTATCTTGTTCTCCGTATGTGTCTATGAGGTCCTGAGAATTCAATTATAAGTTGCTATTTCTTACTTCCGTTTCCATCTTCTTTCCACAAATTTTGGATGGTCGGTTGTTTTGGAAGTTAGAATACTGGTAGTTCTGTGGCGATGATCTAGATATTCCTTCCTTGTTCGGTTTTTAAAACAAAAATAATTTGGAGAATTCTCTTGAAGAAAATTTCTACGGGGTTTACTTCTAGCCTATCTTCTTAACCACAATGAGTTGGCTTGGTGGTAAAAAAGGAGTATGAGTATATCTAGAGCTCGTGGGTTCAAACCTACCTAGAAATTAATTTACTACGAGTTGGACGGATTGTTTAGTAGATTAGTTTGCCCACACTCACATATATAAAAAAAACTCTAGCCTATCATCTTGCCCTCGATCCTTAGTGGCATGTTCTTCGCAAGAATAGTGAGACTATTTATTCACCTTCACCTCATAAGGCTGCTTTTCCTACATTCTGCTGTGTGCCTTTTGGAAGATGGAGAAACTAAAGATTAGACGCTTCAGGCATTGGTGGATTTGACTCATAATGAGGATGCTATCTTTGCAGACCAGTTTCTGGACAATTCTTTGGTGGATTTGATGTTATTTCTTTTTTATCTCGTGAGTTTTCTTTCTCTATGATTAAAGATGTAGGATCCTTTTCTTATAGTTTCTTTTGCCAGGTTTGCATGTTGGTTAGGCACTCAAGGCTATGTTTTTGTATGGTCTTTTTGTTCTTCCATTTCCCTCAATGACCATAACAGAAATGAAAGGAAAAAAGAATAAGTTGTTAACTGAAGAGGACGGTTATGCATTGGGTACTTATAATCTGACATTGCAAATTGAGGAACTTGTAATTTTCTACAGTCGTTCGTACACGTGGACTCTTCTAATGTTCCTCCTTTCACTTTTGGGCTTCAATTTGTTTATGAGTATTATTCAATGCATCCATCTTTATGCATCACACAAATAGAGAGAATTAAAATATTTCAAAAACGATGTTAGAAGAATTTGGTGGGGTGTACATAGATACCTGTTTTCCCAGATGCACATGAGTATTTTTTTTATTCATATTTTATTCTAGTTGTGTAATACAAGACAAAGGTCCCCTCAGTTTTATTGTGCACGAATTTGTTATTTGGTGGATTTTTGTTCTTTATAAGAATGGAAGAGAAATCAATGTTATGGTTTTGCAGAAATCTTCGTGTACAAAAATCATTTGCACGAGTACACTCAAAAGGCAAAGATTGCAGTACCAGTATACCAGACTATTGATGAAGGGTCCCCAAGTCTGCCTAAATACAGGTCAACTGTGATGGTTGATGAGGTACATTATGTGTCTCCTAATACCTTCCGTAATCGAAGGGCGGCTGAGCAAGATGCTGCGAGAGTTGCCTTTGAGTACATATCAAAAAAGACAAAGGATGATGCCTTTCTTCTTCTACGTGAGGTACGAGTTATACAGTGA

mRNA sequence

AATTTAACCCTTCAACGTCATTAATATCTCGTCGTCAGGATTAAGAAACCCTGATCATCCTTTCACAGTGAAGAGAGCGAAAATCACCCGACATTCGTTCATTCATTCATAGCCACTGACTGATCGTTCCCATTTCACCAATTTGTTCTCCTCCAATTCCATTACCCTCGATAATAATCGACGATTATGGAAGAATCCGGTACAGTTGAAGCAGGTGCACCGCAACAATCTCCATTCCCGTCCGACTCAGTTCCAACTGTTGTTACCCCTCCTATTCCGGTAGAAAACTCCAATACTTTTCAGCCTCAACCAGATATTCATCCTCCATCTGTTTTACCGGACTTAGTTCCGATTCCAAGTGCGGCTCCAGCTCCGATTCCGTCTCCTAATCTCTCTGATCATACTCAAATCTTCGTGTACAAAAATCATTTGCACGAGTACACTCAAAAGGCAAAGATTGCAGTACCAGTATACCAGACTATTGATGAAGGGTCCCCAAGTCTGCCTAAATACAGGTCAACTGTGATGGTTGATGAGGTACATTATGTGTCTCCTAATACCTTCCGTAATCGAAGGGCGGCTGAGCAAGATGCTGCGAGAGTTGCCTTTGAGTACATATCAAAAAAGACAAAGGATGATGCCTTTCTTCTTCTACGTGAGGTACGAGTTATACAGTGA

Coding sequence (CDS)

ATGGAAGAATCCGGTACAGTTGAAGCAGGTGCACCGCAACAATCTCCATTCCCGTCCGACTCAGTTCCAACTGTTGTTACCCCTCCTATTCCGGTAGAAAACTCCAATACTTTTCAGCCTCAACCAGATATTCATCCTCCATCTGTTTTACCGGACTTAGTTCCGATTCCAAGTGCGGCTCCAGCTCCGATTCCGTCTCCTAATCTCTCTGATCATACTCAAATCTTCGTGTACAAAAATCATTTGCACGAGTACACTCAAAAGGCAAAGATTGCAGTACCAGTATACCAGACTATTGATGAAGGGTCCCCAAGTCTGCCTAAATACAGGTCAACTGTGATGGTTGATGAGGTACATTATGTGTCTCCTAATACCTTCCGTAATCGAAGGGCGGCTGAGCAAGATGCTGCGAGAGTTGCCTTTGAGTACATATCAAAAAAGACAAAGGATGATGCCTTTCTTCTTCTACGTGAGGTACGAGTTATACAGTGA

Protein sequence

MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREVRVIQ*

Homology

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BLAST of CSPI03G21790 vs. ExPASy Swiss-Prot
Match: O04492 (Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=DRB1 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.5e-09
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 0


Query: 76  FVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQD 135
           +V+K+ L EY QK K+  PVY+ + EG      ++STV++D V Y S   F NR+AAEQ 
Sbjct: 14  YVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQS 73

Query: 136 AARVAFEYISKKTK 150
           AA VA   ++K ++
Sbjct: 74  AAEVALRELAKSSE 87

[Close]

BLAST of CSPI03G21790 vs. ExPASy Swiss-Prot
Match: Q0DJA3 (Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB3 PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 9.4e-09
Identity = 39/102 (38.24%), Postives = 54/102 (52.94%), Query Frame = 0


Query: 55  PIP----SAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYR 114
           P+P    + +PAPI +         +V+K+ L EY QKA +  P Y T  EG    P ++
Sbjct: 9   PLPPETANTSPAPIGATAGIRVENCYVFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFK 68

Query: 115 STVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDA 153
           STV+++   Y S   F NR+AAEQ AA VA   I K    +A
Sbjct: 69  STVVINNTSYGSLPGFSNRKAAEQSAAEVALMEIVKSIPANA 110

[Close]

BLAST of CSPI03G21790 vs. ExPASy Swiss-Prot
Match: Q0IV63 (Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB7 PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.2e-08
Identity = 43/111 (38.74%), Postives = 57/111 (51.35%), Query Frame = 0


Query: 46  PPSVLP----DLVPIPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDE 105
           PP+ LP    +  P P+ A A I   N       +V+K+ L EY QKA +  P Y T  E
Sbjct: 4   PPTPLPPETANTSPAPNGATAGIRVEN------CYVFKSRLQEYAQKAGLQTPEYHTFKE 63

Query: 106 GSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDA 153
           G    P ++STV+++   Y S   F NR+AAEQ AA VA   I K    +A
Sbjct: 64  GPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVALMEIVKSIPANA 108

[Close]

BLAST of CSPI03G21790 vs. ExPASy Swiss-Prot
Match: Q0IQN6 (Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB8 PE=2 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 3.6e-08
Identity = 42/111 (37.84%), Postives = 56/111 (50.45%), Query Frame = 0


Query: 46  PPSVLP----DLVPIPSAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDE 105
           PP+ LP    +  P P+ A A I   N       +V+K+ L EY QK  +  P Y T  E
Sbjct: 4   PPTPLPPETANTSPAPNGATAGIRVEN------CYVFKSRLQEYAQKTGLQTPEYHTFKE 63

Query: 106 GSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDAARVAFEYISKKTKDDA 153
           G    P ++STV+++   Y S   F NR+AAEQ AA VA   I K    +A
Sbjct: 64  GPSHEPVFKSTVVINNTSYDSLPGFFNRKAAEQSAAEVALMEIVKSIPANA 108

[Close]

BLAST of CSPI03G21790 vs. ExPASy Swiss-Prot
Match: Q6YW64 (Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=DRB4 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.0e-07
Identity = 37/96 (38.54%), Postives = 54/96 (56.25%), Query Frame = 0


Query: 58  SAAPAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDE 117
           S AP P P P+ +       YK+ L EY Q+A   +P+Y T  +G     K++STVMVD 
Sbjct: 26  SPAPLPPPPPHCN-------YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDG 85

Query: 118 VHYVSPNTFRNRRAAEQDAARVAFEYI--SKKTKDD 152
             + S    R  + AEQDAA+VA++ +   K+T+ D
Sbjct: 86  EEFSSTFCHRRVKDAEQDAAKVAYDTLLERKETETD 114

[Close]

BLAST of CSPI03G21790 vs. ExPASy TrEMBL
Match: A0A0A0LAZ4 (DRBM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G345380 PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 3.2e-84
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0


Query: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60
           MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA
Sbjct: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60

Query: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120
           PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY
Sbjct: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120

Query: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREVRVIQ 164
           VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREVRVIQ
Sbjct: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREVRVIQ 163

[Close]

BLAST of CSPI03G21790 vs. ExPASy TrEMBL
Match: A0A5D3BR72 (Double-stranded RNA-binding protein 4-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G00660 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.3e-72
Identity = 144/162 (88.89%), Postives = 153/162 (94.44%), Query Frame = 0


Query: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60
           ME SGTVEAGAPQQSPF SDSVPTVVTPPIPV+N +T Q QP+IHPPSVLPDLV IPSAA
Sbjct: 1   MEASGTVEAGAPQQSPFRSDSVPTVVTPPIPVQNFHTLQSQPNIHPPSVLPDLVLIPSAA 60

Query: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120
           PAPIPSPNLSD TQIFVYKNHLHEY QKA+IAVPVYQTIDEGSP LPK+RSTV++DEVHY
Sbjct: 61  PAPIPSPNLSDPTQIFVYKNHLHEYAQKARIAVPVYQTIDEGSPGLPKFRSTVLLDEVHY 120

Query: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREVRVI 163
           VSPNTFRNRRAAEQDAAR+AFEYISKKTKDDAFLLLREV+VI
Sbjct: 121 VSPNTFRNRRAAEQDAARIAFEYISKKTKDDAFLLLREVQVI 162

[Close]

BLAST of CSPI03G21790 vs. ExPASy TrEMBL
Match: A0A5A7V1Q3 (Double-stranded RNA-binding protein 4-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72G00670 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 4.0e-71
Identity = 141/158 (89.24%), Postives = 149/158 (94.30%), Query Frame = 0


Query: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60
           ME SGTVEAGAPQQSPF SDSVPTVVTPPIPV+N +T Q QP+IHPPSVLPDLV IPSAA
Sbjct: 1   MEASGTVEAGAPQQSPFRSDSVPTVVTPPIPVQNFHTLQSQPNIHPPSVLPDLVLIPSAA 60

Query: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120
           PAPIPSPNLSD TQIFVYKNHLHEY QKA+IAVPVYQTIDEGSP LPK+RSTV++DEVHY
Sbjct: 61  PAPIPSPNLSDPTQIFVYKNHLHEYAQKARIAVPVYQTIDEGSPGLPKFRSTVLLDEVHY 120

Query: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE 159
           VSPNTFRNRRAAEQDAAR+AFEYISKKTKDDAFLLLRE
Sbjct: 121 VSPNTFRNRRAAEQDAARIAFEYISKKTKDDAFLLLRE 158

[Close]

BLAST of CSPI03G21790 vs. ExPASy TrEMBL
Match: A0A1S3C4R2 (uncharacterized protein LOC103496837 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496837 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 4.0e-71
Identity = 141/158 (89.24%), Postives = 149/158 (94.30%), Query Frame = 0


Query: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60
           ME SGTVEAGAPQQSPF SDSVPTVVTPPIPV+N +T Q QP+IHPPSVLPDLV IPSAA
Sbjct: 1   MEASGTVEAGAPQQSPFRSDSVPTVVTPPIPVQNFHTLQSQPNIHPPSVLPDLVLIPSAA 60

Query: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120
           PAPIPSPNLSD TQIFVYKNHLHEY QKA+IAVPVYQTIDEGSP LPK+RSTV++DEVHY
Sbjct: 61  PAPIPSPNLSDPTQIFVYKNHLHEYAQKARIAVPVYQTIDEGSPGLPKFRSTVLLDEVHY 120

Query: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE 159
           VSPNTFRNRRAAEQDAAR+AFEYISKKTKDDAFLLLRE
Sbjct: 121 VSPNTFRNRRAAEQDAARIAFEYISKKTKDDAFLLLRE 158

[Close]

BLAST of CSPI03G21790 vs. ExPASy TrEMBL
Match: A0A1S3C485 (uncharacterized protein LOC103496837 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496837 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 4.0e-71
Identity = 141/158 (89.24%), Postives = 149/158 (94.30%), Query Frame = 0


Query: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60
           ME SGTVEAGAPQQSPF SDSVPTVVTPPIPV+N +T Q QP+IHPPSVLPDLV IPSAA
Sbjct: 1   MEASGTVEAGAPQQSPFRSDSVPTVVTPPIPVQNFHTLQSQPNIHPPSVLPDLVLIPSAA 60

Query: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120
           PAPIPSPNLSD TQIFVYKNHLHEY QKA+IAVPVYQTIDEGSP LPK+RSTV++DEVHY
Sbjct: 61  PAPIPSPNLSDPTQIFVYKNHLHEYAQKARIAVPVYQTIDEGSPGLPKFRSTVLLDEVHY 120

Query: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE 159
           VSPNTFRNRRAAEQDAAR+AFEYISKKTKDDAFLLLRE
Sbjct: 121 VSPNTFRNRRAAEQDAARIAFEYISKKTKDDAFLLLRE 158

[Close]

BLAST of CSPI03G21790 vs. NCBI nr
Match: XP_004149792.1 (uncharacterized protein LOC101213863 isoform X1 [Cucumis sativus] >KAE8650625.1 hypothetical protein Csa_011062 [Cucumis sativus])

HSP 1 Score: 312.4 bits (799), Expect = 2.3e-81
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60
           MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA
Sbjct: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60

Query: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120
           PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY
Sbjct: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120

Query: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE 159
           VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE
Sbjct: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE 158

[Close]

BLAST of CSPI03G21790 vs. NCBI nr
Match: XP_011651405.1 (double-stranded RNA-binding protein 4 isoform X2 [Cucumis sativus])

HSP 1 Score: 312.4 bits (799), Expect = 2.3e-81
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60
           MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA
Sbjct: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60

Query: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120
           PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY
Sbjct: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120

Query: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE 159
           VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE
Sbjct: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE 158

[Close]

BLAST of CSPI03G21790 vs. NCBI nr
Match: TYK01508.1 (double-stranded RNA-binding protein 4-like isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 282.3 bits (721), Expect = 2.6e-72
Identity = 144/162 (88.89%), Postives = 153/162 (94.44%), Query Frame = 0


Query: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60
           ME SGTVEAGAPQQSPF SDSVPTVVTPPIPV+N +T Q QP+IHPPSVLPDLV IPSAA
Sbjct: 1   MEASGTVEAGAPQQSPFRSDSVPTVVTPPIPVQNFHTLQSQPNIHPPSVLPDLVLIPSAA 60

Query: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120
           PAPIPSPNLSD TQIFVYKNHLHEY QKA+IAVPVYQTIDEGSP LPK+RSTV++DEVHY
Sbjct: 61  PAPIPSPNLSDPTQIFVYKNHLHEYAQKARIAVPVYQTIDEGSPGLPKFRSTVLLDEVHY 120

Query: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLREVRVI 163
           VSPNTFRNRRAAEQDAAR+AFEYISKKTKDDAFLLLREV+VI
Sbjct: 121 VSPNTFRNRRAAEQDAARIAFEYISKKTKDDAFLLLREVQVI 162

[Close]

BLAST of CSPI03G21790 vs. NCBI nr
Match: XP_008457068.1 (PREDICTED: double-stranded RNA-binding protein 4-like isoform X3 [Cucumis melo])

HSP 1 Score: 277.3 bits (708), Expect = 8.4e-71
Identity = 141/158 (89.24%), Postives = 149/158 (94.30%), Query Frame = 0


Query: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60
           ME SGTVEAGAPQQSPF SDSVPTVVTPPIPV+N +T Q QP+IHPPSVLPDLV IPSAA
Sbjct: 1   MEASGTVEAGAPQQSPFRSDSVPTVVTPPIPVQNFHTLQSQPNIHPPSVLPDLVLIPSAA 60

Query: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120
           PAPIPSPNLSD TQIFVYKNHLHEY QKA+IAVPVYQTIDEGSP LPK+RSTV++DEVHY
Sbjct: 61  PAPIPSPNLSDPTQIFVYKNHLHEYAQKARIAVPVYQTIDEGSPGLPKFRSTVLLDEVHY 120

Query: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE 159
           VSPNTFRNRRAAEQDAAR+AFEYISKKTKDDAFLLLRE
Sbjct: 121 VSPNTFRNRRAAEQDAARIAFEYISKKTKDDAFLLLRE 158

[Close]

BLAST of CSPI03G21790 vs. NCBI nr
Match: XP_008457066.1 (PREDICTED: uncharacterized protein LOC103496837 isoform X1 [Cucumis melo])

HSP 1 Score: 277.3 bits (708), Expect = 8.4e-71
Identity = 141/158 (89.24%), Postives = 149/158 (94.30%), Query Frame = 0


Query: 1   MEESGTVEAGAPQQSPFPSDSVPTVVTPPIPVENSNTFQPQPDIHPPSVLPDLVPIPSAA 60
           ME SGTVEAGAPQQSPF SDSVPTVVTPPIPV+N +T Q QP+IHPPSVLPDLV IPSAA
Sbjct: 1   MEASGTVEAGAPQQSPFRSDSVPTVVTPPIPVQNFHTLQSQPNIHPPSVLPDLVLIPSAA 60

Query: 61  PAPIPSPNLSDHTQIFVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHY 120
           PAPIPSPNLSD TQIFVYKNHLHEY QKA+IAVPVYQTIDEGSP LPK+RSTV++DEVHY
Sbjct: 61  PAPIPSPNLSDPTQIFVYKNHLHEYAQKARIAVPVYQTIDEGSPGLPKFRSTVLLDEVHY 120

Query: 121 VSPNTFRNRRAAEQDAARVAFEYISKKTKDDAFLLLRE 159
           VSPNTFRNRRAAEQDAAR+AFEYISKKTKDDAFLLLRE
Sbjct: 121 VSPNTFRNRRAAEQDAARIAFEYISKKTKDDAFLLLRE 158

[Close]

BLAST of CSPI03G21790 vs. TAIR 10
Match: AT1G09700.1 (dsRNA-binding domain-like superfamily protein )

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-10
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 0


Query: 76  FVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQD 135
           +V+K+ L EY QK K+  PVY+ + EG      ++STV++D V Y S   F NR+AAEQ 
Sbjct: 14  YVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQS 73

Query: 136 AARVAFEYISKKTK 150
           AA VA   ++K ++
Sbjct: 74  AAEVALRELAKSSE 87

[Close]

BLAST of CSPI03G21790 vs. TAIR 10
Match: AT2G28380.1 (dsRNA-binding protein 2 )

HSP 1 Score: 44.3 bits (103), Expect = 1.1e-04
Identity = 24/71 (33.80%), Postives = 36/71 (50.70%), Query Frame = 0


Query: 77  VYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDA 136
           +YKN L E  Q++   +P Y  I EG    P++++TV  +   + SP      R AE  A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60

Query: 137 ARVAFEYISKK 148
           A VA   +S +
Sbjct: 61  AEVALNALSNR 71

[Close]

BLAST of CSPI03G21790 vs. TAIR 10
Match: AT3G26932.1 (dsRNA-binding protein 3 )

HSP 1 Score: 43.1 bits (100), Expect = 2.5e-04
Identity = 23/71 (32.39%), Postives = 36/71 (50.70%), Query Frame = 0


Query: 77  VYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDA 136
           +YKN L E  Q++  ++P Y    EG    P+++++V  +   + SP      R AE  A
Sbjct: 1   MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 137 ARVAFEYISKK 148
           A VA   +S K
Sbjct: 61  AEVALSALSSK 71

[Close]

BLAST of CSPI03G21790 vs. TAIR 10
Match: AT3G26932.2 (dsRNA-binding protein 3 )

HSP 1 Score: 43.1 bits (100), Expect = 2.5e-04
Identity = 23/71 (32.39%), Postives = 36/71 (50.70%), Query Frame = 0


Query: 77  VYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDA 136
           +YKN L E  Q++  ++P Y    EG    P+++++V  +   + SP      R AE  A
Sbjct: 1   MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 137 ARVAFEYISKK 148
           A VA   +S K
Sbjct: 61  AEVALSALSSK 71

[Close]

BLAST of CSPI03G21790 vs. TAIR 10
Match: AT5G41070.1 (dsRNA-binding protein 5 )

HSP 1 Score: 41.2 bits (95), Expect = 9.4e-04
Identity = 22/71 (30.99%), Postives = 36/71 (50.70%), Query Frame = 0


Query: 77  VYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQDA 136
           +YKN L E  Q++   +P Y  I EG    P+++++V  +   + SP      R AE  A
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60

Query: 137 ARVAFEYISKK 148
           A V+   +S +
Sbjct: 61  AEVSLNVLSSR 71

The following BLAST results are available for this feature:

BLAST of CSPI03G21790 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04492	1.5e-09	43.24	Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=DRB1 PE...	[more]
Q0DJA3	9.4e-09	38.24	Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
Q0IV63	1.2e-08	38.74	Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
Q0IQN6	3.6e-08	37.84	Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
Q6YW64	3.0e-07	38.54	Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]

BLAST of CSPI03G21790 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAZ4	3.2e-84	100.00	DRBM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G345380 PE=4 S...	[more]
A0A5D3BR72	1.3e-72	88.89	Double-stranded RNA-binding protein 4-like isoform X3 OS=Cucumis melo var. makuw...	[more]
A0A5A7V1Q3	4.0e-71	89.24	Double-stranded RNA-binding protein 4-like isoform X3 OS=Cucumis melo var. makuw...	[more]
A0A1S3C4R2	4.0e-71	89.24	uncharacterized protein LOC103496837 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3C485	4.0e-71	89.24	uncharacterized protein LOC103496837 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of CSPI03G21790 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149792.1	2.3e-81	100.00	uncharacterized protein LOC101213863 isoform X1 [Cucumis sativus] >KAE8650625.1 ...	[more]
XP_011651405.1	2.3e-81	100.00	double-stranded RNA-binding protein 4 isoform X2 [Cucumis sativus]	[more]
TYK01508.1	2.6e-72	88.89	double-stranded RNA-binding protein 4-like isoform X3 [Cucumis melo var. makuwa]	[more]
XP_008457068.1	8.4e-71	89.24	PREDICTED: double-stranded RNA-binding protein 4-like isoform X3 [Cucumis melo]	[more]
XP_008457066.1	8.4e-71	89.24	PREDICTED: uncharacterized protein LOC103496837 isoform X1 [Cucumis melo]	[more]

BLAST of CSPI03G21790 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09700.1	1.0e-10	43.24	dsRNA-binding domain-like superfamily protein	[more]
AT2G28380.1	1.1e-04	33.80	dsRNA-binding protein 2	[more]
AT3G26932.1	2.5e-04	32.39	dsRNA-binding protein 3	[more]
AT3G26932.2	2.5e-04	32.39	dsRNA-binding protein 3	[more]
AT5G41070.1	9.4e-04	30.99	dsRNA-binding protein 5	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014720	Double-stranded RNA-binding domain	SMART	SM00358	DRBM_3	coord: 78..145 e-value: 5.5E-11 score: 52.5
IPR014720	Double-stranded RNA-binding domain	PFAM	PF00035	dsrm	coord: 78..143 e-value: 1.1E-9 score: 38.8
IPR014720	Double-stranded RNA-binding domain	PROSITE	PS50137	DS_RBD	coord: 77..146 score: 11.237091
None	No IPR available	GENE3D	3.30.160.20		coord: 63..150 e-value: 1.7E-19 score: 71.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..43
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..47
None	No IPR available	PANTHER	PTHR11207:SF26	DOUBLE-STRANDED RNA-BINDING PROTEIN 4	coord: 65..158
None	No IPR available	SUPERFAMILY	54768	dsRNA-binding domain-like	coord: 73..144
IPR011907	Ribonuclease III	PANTHER	PTHR11207	RIBONUCLEASE III	coord: 65..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G21790.1	CSPI03G21790.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process	GO:0016075	rRNA catabolic process
molecular_function	GO:0004525	ribonuclease III activity
molecular_function	GO:0003723	RNA binding