CSPI03G20350 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G20350
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionProtein OPI10-like protein
LocationChr3: 16161403 .. 16161705 (+)
RNA-Seq ExpressionCSPI03G20350
SyntenyCSPI03G20350
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGAAAATGGGCTTCTGCCATTGCTGCAGAGAAAGAGCAGCTTCTGGGTCATTACTATCCTTCGAAGCTCATTGATTTCGAACTCTAGACTGTATCTTAATTTTGGGGCTTTATCTCTCAATCTGGCCTGGCGCTTTTTGGGATGTAGAGGGTATTGCTTGTGCTATTTTGTGGAAGCTTTGAGGAAAGAAACAACAAATATTTTGAAAAATCAGAGGGGTCTTGTGACCCTTGGTAGAATGAAGAATCATACTTCTCTTTGGGTTTTCCTTTGTAAAGAACAACAGAGTTTTGCTTGA

mRNA sequence

ATGAAAGAAAATGGGCTTCTGCCATTGCTGCAGAGAAAGAGCAGCTTCTGGGTCATTACTATCCTTCGAAGCTCATTGATTTCGAACTCTAGACTGTATCTTAATTTTGGGGCTTTATCTCTCAATCTGGCCTGGCGCTTTTTGGGATGTAGAGGGTATTGCTTGTGCTATTTTGTGGAAGCTTTGAGGAAAGAAACAACAAATATTTTGAAAAATCAGAGGGGTCTTGTGACCCTTGGTAGAATGAAGAATCATACTTCTCTTTGGGTTTTCCTTTGTAAAGAACAACAGAGTTTTGCTTGA

Coding sequence (CDS)

ATGAAAGAAAATGGGCTTCTGCCATTGCTGCAGAGAAAGAGCAGCTTCTGGGTCATTACTATCCTTCGAAGCTCATTGATTTCGAACTCTAGACTGTATCTTAATTTTGGGGCTTTATCTCTCAATCTGGCCTGGCGCTTTTTGGGATGTAGAGGGTATTGCTTGTGCTATTTTGTGGAAGCTTTGAGGAAAGAAACAACAAATATTTTGAAAAATCAGAGGGGTCTTGTGACCCTTGGTAGAATGAAGAATCATACTTCTCTTTGGGTTTTCCTTTGTAAAGAACAACAGAGTTTTGCTTGA

Protein sequence

MKENGLLPLLQRKSSFWVITILRSSLISNSRLYLNFGALSLNLAWRFLGCRGYCLCYFVEALRKETTNILKNQRGLVTLGRMKNHTSLWVFLCKEQQSFA*
Homology
[Close]
BLAST of CSPI03G20350 vs. ExPASy TrEMBL
Match: A0A5D3DY50 (Protein OPI10-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold600G00570 PE=3 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 3.1e-05
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 0 

Query: 13  KSSFWVITILRSSLISNSRLYLNFGALSLNLAWRF 48
           KSS W +TI+RSSLISNSRLYLNFGALSLNLA  F
Sbjct: 186 KSSLWFVTIVRSSLISNSRLYLNFGALSLNLAGAF 220

[Close]
BLAST of CSPI03G20350 vs. NCBI nr
Match: KAA0048458.1 (protein OPI10-like protein [Cucumis melo var. makuwa] >TYK28255.1 protein OPI10-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 6.4e-05
Identity = 29/35 (82.86%), Postives = 31/35 (88.57%), Query Frame = 0 

Query: 13  KSSFWVITILRSSLISNSRLYLNFGALSLNLAWRF 48
           KSS W +TI+RSSLISNSRLYLNFGALSLNLA  F
Sbjct: 186 KSSLWFVTIVRSSLISNSRLYLNFGALSLNLAGAF 220

The following BLAST results are available for this feature:
BLAST of CSPI03G20350 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI03G20350 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DY503.1e-0582.86Protein OPI10-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
BLAST of CSPI03G20350 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0048458.16.4e-0582.86protein OPI10-like protein [Cucumis melo var. makuwa] >TYK28255.1 protein OPI10-... [more]
BLAST of CSPI03G20350 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G20350.1CSPI03G20350.1mRNA