CSPI03G07300 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G07300
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Late cornified envelope protein 1E
Location	Chr3: 6490773 .. 6491398 (+)
RNA-Seq Expression	CSPI03G07300
Synteny	CSPI03G07300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGCTCCTCTACGAAAGCGATTGCTCTACTCCAACCATGCACCCACCCCCAACACACTTCTCCCTCTCTCTCTCTCTATATATATAATCTCAATATCAATTCCTCTACTTATATTATCACAAGTCCTAAGTCCATGGATTTGAATCCCCCTCTCTGTTGTCTATGCGGCGACGTCGGTTTTCCAGCCAAGCTCTTCCGCTGCACCAATTGCTCCAACCGATTTCAGCACTCGTAAGACTCTCTCTCTCTCACACACATATGCACACACCCTCTTCTTTATATATATTCTTTCGCTTTTGATTTCATCAACAAGTCTCTAATAGCCTGTCAATTTTTCAGTTACTGTAGTAACTACTACTGCGGGGAATCGGGTGATGCAACAATTCGAGTATGTGATTGGTGCCGAAGTGAACAAAGAACCTGCCGTCCTGCCTTTGCAAGTACAACATCCCAAAAGAGTAACAAAATTACAGAAAGAAGAAGCTCTGCGGTGGGACTGCCTTCCCCTCGCCCTGCTCCACGCCGATACAAGCTTCTCAAAGATGTCATGTGTTAGATAACTTTACATTAAACCAACCAAAAATACCCTTTTTCATTTTTCATTCTCTTACTTACTTTACACACGCA

mRNA sequence

TGCTCCTCTACGAAAGCGATTGCTCTACTCCAACCATGCACCCACCCCCAACACACTTCTCCCTCTCTCTCTCTCTATATATATAATCTCAATATCAATTCCTCTACTTATATTATCACAAGTCCTAAGTCCATGGATTTGAATCCCCCTCTCTGTTGTCTATGCGGCGACGTCGGTTTTCCAGCCAAGCTCTTCCGCTGCACCAATTGCTCCAACCGATTTCAGCACTCTTACTGTAGTAACTACTACTGCGGGGAATCGGGTGATGCAACAATTCGAGTATGTGATTGGTGCCGAAGTGAACAAAGAACCTGCCGTCCTGCCTTTGCAAGTACAACATCCCAAAAGAGTAACAAAATTACAGAAAGAAGAAGCTCTGCGGTGGGACTGCCTTCCCCTCGCCCTGCTCCACGCCGATACAAGCTTCTCAAAGATGTCATGTGTTAGATAACTTTACATTAAACCAACCAAAAATACCCTTTTTCATTTTTCATTCTCTTACTTACTTTACACACGCA

Coding sequence (CDS)

ATGGATTTGAATCCCCCTCTCTGTTGTCTATGCGGCGACGTCGGTTTTCCAGCCAAGCTCTTCCGCTGCACCAATTGCTCCAACCGATTTCAGCACTCTTACTGTAGTAACTACTACTGCGGGGAATCGGGTGATGCAACAATTCGAGTATGTGATTGGTGCCGAAGTGAACAAAGAACCTGCCGTCCTGCCTTTGCAAGTACAACATCCCAAAAGAGTAACAAAATTACAGAAAGAAGAAGCTCTGCGGTGGGACTGCCTTCCCCTCGCCCTGCTCCACGCCGATACAAGCTTCTCAAAGATGTCATGTGTTAG

Protein sequence

MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRTCRPAFASTTSQKSNKITERRSSAVGLPSPRPAPRRYKLLKDVMC*

Homology

[Close]

BLAST of CSPI03G07300 vs. ExPASy TrEMBL
Match: A0A0A0L5P1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G117940 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 1.8e-56
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRT 60
           MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRT
Sbjct: 1   MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRT 60

Query: 61  CRPAFASTTSQKSNKITERRSSAVGLPSPRPAPRRYKLLKDVMC 105
           CRPAFASTTSQKSNKITERRSSAVGLPSPRPAPRRYKLLKDVMC
Sbjct: 61  CRPAFASTTSQKSNKITERRSSAVGLPSPRPAPRRYKLLKDVMC 104

[Close]

BLAST of CSPI03G07300 vs. ExPASy TrEMBL
Match: A0A5D3DB67 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00440 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.4e-48
Identity = 95/105 (90.48%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 1   MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRT 60
           MDLNPPLCCLCGDVGFPA LFRCTNCSNRFQHSYCSNYY GESGDA IRVCDWCRSEQRT
Sbjct: 1   MDLNPPLCCLCGDVGFPANLFRCTNCSNRFQHSYCSNYYSGESGDAIIRVCDWCRSEQRT 60

Query: 61  CRP-AFASTTSQKSNKITERRSSAVGLPSPRPAPRRYKLLKDVMC 105
            RP AFA+TTSQK  KITE RSSA GLPSPRPAPRRYKLLKDVMC
Sbjct: 61  RRPAAFATTTSQKDRKITEIRSSAAGLPSPRPAPRRYKLLKDVMC 105

[Close]

BLAST of CSPI03G07300 vs. ExPASy TrEMBL
Match: A0A1S3AVF1 (uncharacterized protein LOC103483122 OS=Cucumis melo OX=3656 GN=LOC103483122 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.4e-48
Identity = 95/105 (90.48%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 1   MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRT 60
           MDLNPPLCCLCGDVGFPA LFRCTNCSNRFQHSYCSNYY GESGDA IRVCDWCRSEQRT
Sbjct: 41  MDLNPPLCCLCGDVGFPANLFRCTNCSNRFQHSYCSNYYSGESGDAIIRVCDWCRSEQRT 100

Query: 61  CRP-AFASTTSQKSNKITERRSSAVGLPSPRPAPRRYKLLKDVMC 105
            RP AFA+TTSQK  KITE RSSA GLPSPRPAPRRYKLLKDVMC
Sbjct: 101 RRPAAFATTTSQKDRKITEIRSSAAGLPSPRPAPRRYKLLKDVMC 145

[Close]

BLAST of CSPI03G07300 vs. ExPASy TrEMBL
Match: A0A6J1ED69 (uncharacterized protein LOC111432109 OS=Cucurbita moschata OX=3662 GN=LOC111432109 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.5e-39
Identity = 82/112 (73.21%), Postives = 90/112 (80.36%), Query Frame = 0


Query: 1   MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRT 60
           MDLN PLCCLCGDVGFPAKLFRC NCSNRFQHSYCSN+YCGES D   R+CDWCR+E  T
Sbjct: 1   MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQHSYCSNFYCGESADPITRLCDWCRTEHTT 60

Query: 61  CRPAFAS----TTSQKSNK----ITERRSSAVGLPSPRPAPRRYKLLKDVMC 105
            RP+ A+     TSQK +K    ITE +SSA G+PSPRPAPRRYKLLKDVMC
Sbjct: 61  RRPSPAAANNGATSQKPHKMTDQITETKSSATGVPSPRPAPRRYKLLKDVMC 112

[Close]

BLAST of CSPI03G07300 vs. ExPASy TrEMBL
Match: A0A6J1IAU2 (uncharacterized protein LOC111472884 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111472884 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 4.2e-29
Identity = 69/104 (66.35%), Postives = 79/104 (75.96%), Query Frame = 0


Query: 5   PPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRTCRPA 64
           PP+CCLCGDVGFPA LFRCT CS+RFQHSYCSNYY GES +A I VCDWCR E+R  R  
Sbjct: 16  PPVCCLCGDVGFPANLFRCTLCSHRFQHSYCSNYY-GESAEA-IEVCDWCRCERRCGRRG 75

Query: 65  FAS----TTSQKSNKITERRSSAVGLPSPRPAPRRYKLLKDVMC 105
            A+      SQKS+   +R  ++ G+PSPR APRRYKLLKDVMC
Sbjct: 76  SAARKFGVASQKSSGQDKRERNSGGMPSPRVAPRRYKLLKDVMC 117

[Close]

BLAST of CSPI03G07300 vs. NCBI nr
Match: XP_004134287.1 (uncharacterized protein LOC101222685 [Cucumis sativus] >KGN56359.1 hypothetical protein Csa_010459 [Cucumis sativus])

HSP 1 Score: 228.0 bits (580), Expect = 3.7e-56
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRT 60
           MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRT
Sbjct: 1   MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRT 60

Query: 61  CRPAFASTTSQKSNKITERRSSAVGLPSPRPAPRRYKLLKDVMC 105
           CRPAFASTTSQKSNKITERRSSAVGLPSPRPAPRRYKLLKDVMC
Sbjct: 61  CRPAFASTTSQKSNKITERRSSAVGLPSPRPAPRRYKLLKDVMC 104

[Close]

BLAST of CSPI03G07300 vs. NCBI nr
Match: XP_008437789.1 (PREDICTED: uncharacterized protein LOC103483122 [Cucumis melo])

HSP 1 Score: 201.1 bits (510), Expect = 4.9e-48
Identity = 95/105 (90.48%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 1   MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRT 60
           MDLNPPLCCLCGDVGFPA LFRCTNCSNRFQHSYCSNYY GESGDA IRVCDWCRSEQRT
Sbjct: 41  MDLNPPLCCLCGDVGFPANLFRCTNCSNRFQHSYCSNYYSGESGDAIIRVCDWCRSEQRT 100

Query: 61  CRP-AFASTTSQKSNKITERRSSAVGLPSPRPAPRRYKLLKDVMC 105
            RP AFA+TTSQK  KITE RSSA GLPSPRPAPRRYKLLKDVMC
Sbjct: 101 RRPAAFATTTSQKDRKITEIRSSAAGLPSPRPAPRRYKLLKDVMC 145

[Close]

BLAST of CSPI03G07300 vs. NCBI nr
Match: KAA0048831.1 (uncharacterized protein E6C27_scaffold171G00440 [Cucumis melo var. makuwa] >TYK20783.1 uncharacterized protein E5676_scaffold291G00440 [Cucumis melo var. makuwa])

HSP 1 Score: 201.1 bits (510), Expect = 4.9e-48
Identity = 95/105 (90.48%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 1   MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRT 60
           MDLNPPLCCLCGDVGFPA LFRCTNCSNRFQHSYCSNYY GESGDA IRVCDWCRSEQRT
Sbjct: 1   MDLNPPLCCLCGDVGFPANLFRCTNCSNRFQHSYCSNYYSGESGDAIIRVCDWCRSEQRT 60

Query: 61  CRP-AFASTTSQKSNKITERRSSAVGLPSPRPAPRRYKLLKDVMC 105
            RP AFA+TTSQK  KITE RSSA GLPSPRPAPRRYKLLKDVMC
Sbjct: 61  RRPAAFATTTSQKDRKITEIRSSAAGLPSPRPAPRRYKLLKDVMC 105

[Close]

BLAST of CSPI03G07300 vs. NCBI nr
Match: XP_038904003.1 (uncharacterized protein LOC120090420 [Benincasa hispida])

HSP 1 Score: 185.7 bits (470), Expect = 2.1e-43
Identity = 86/108 (79.63%), Postives = 92/108 (85.19%), Query Frame = 0


Query: 1   MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRT 60
           MD N PLCCLCGDVGF A LFRC+NCSNRFQHSYCSNYYCGESGDATI+VCDWCRS+QRT
Sbjct: 1   MDFNRPLCCLCGDVGFSAHLFRCSNCSNRFQHSYCSNYYCGESGDATIKVCDWCRSDQRT 60

Query: 61  CRPAFASTTSQ----KSNKITERRSSAVGLPSPRPAPRRYKLLKDVMC 105
            RP  A+T  +      N+ITERRSSA GLPSPRPAPRRYKLLKDVMC
Sbjct: 61  RRPGSATTPQKDHKISDNQITERRSSAAGLPSPRPAPRRYKLLKDVMC 108

[Close]

BLAST of CSPI03G07300 vs. NCBI nr
Match: XP_022924678.1 (uncharacterized protein LOC111432109 [Cucurbita moschata])

HSP 1 Score: 171.8 bits (434), Expect = 3.2e-39
Identity = 82/112 (73.21%), Postives = 90/112 (80.36%), Query Frame = 0


Query: 1   MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQRT 60
           MDLN PLCCLCGDVGFPAKLFRC NCSNRFQHSYCSN+YCGES D   R+CDWCR+E  T
Sbjct: 1   MDLNRPLCCLCGDVGFPAKLFRCANCSNRFQHSYCSNFYCGESADPITRLCDWCRTEHTT 60

Query: 61  CRPAFAS----TTSQKSNK----ITERRSSAVGLPSPRPAPRRYKLLKDVMC 105
            RP+ A+     TSQK +K    ITE +SSA G+PSPRPAPRRYKLLKDVMC
Sbjct: 61  RRPSPAAANNGATSQKPHKMTDQITETKSSATGVPSPRPAPRRYKLLKDVMC 112

[Close]

BLAST of CSPI03G07300 vs. TAIR 10
Match: AT3G60520.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G02070.1); Has 107 Blast hits to 107 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 107; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 107.5 bits (267), Expect = 6.8e-24
Identity = 60/130 (46.15%), Postives = 77/130 (59.23%), Query Frame = 0


Query: 1   MDLNPPLCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCR----- 60
           +DL   +CC+CGDVGF  KLF C+ C NRFQHSYCS+YY  E  D  I++CDWC+     
Sbjct: 2   VDLERRVCCMCGDVGFFDKLFHCSKCLNRFQHSYCSSYY-KEQAD-PIKICDWCQCEAKS 61

Query: 61  -----------SEQRTCRPAFASTTSQ-KSNKITERRSSAV---------GLPSPRPAPR 105
                      S +R+ R  ++S   Q K  +I +  SS++         G+PSPRPA R
Sbjct: 62  RTGAKHGVNGGSSKRSYRSEYSSPHHQIKQQEINQTTSSSIPPAADKGKTGVPSPRPATR 121

[Close]

BLAST of CSPI03G07300 vs. TAIR 10
Match: AT1G02070.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G60520.1); Has 98 Blast hits to 98 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 88.2 bits (217), Expect = 4.3e-18
Identity = 54/130 (41.54%), Postives = 66/130 (50.77%), Query Frame = 0


Query: 7   LCCLCGDVGFPAKLFRCTNCSNRFQHSYCSNYYCGESGDATIRVCDWCRSEQR----TCR 66
           +CC+CGDVGF  KLF C +C  RFQHSYCSNYY G+  + T  +CDWCRS+ R      R
Sbjct: 4   VCCMCGDVGFSDKLFSCGHCRCRFQHSYCSNYY-GQFAEPT-EICDWCRSDDRKLSNVAR 63

Query: 67  PAFASTTSQKSN-------------------KITERRSSAV---------GLPSPRPAPR 105
              +S+    S+                   K    R   V         G+ SP+ A R
Sbjct: 64  HGGSSSKKPSSSVKYENDFSNRSEYSPGHRIKHNNNRHDQVAKGVAGDGGGVTSPKTATR 123

The following BLAST results are available for this feature:

BLAST of CSPI03G07300 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G07300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L5P1	1.8e-56	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G117940 PE=4 SV=1	[more]
A0A5D3DB67	2.4e-48	90.48	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3AVF1	2.4e-48	90.48	uncharacterized protein LOC103483122 OS=Cucumis melo OX=3656 GN=LOC103483122 PE=...	[more]
A0A6J1ED69	1.5e-39	73.21	uncharacterized protein LOC111432109 OS=Cucurbita moschata OX=3662 GN=LOC1114321...	[more]
A0A6J1IAU2	4.2e-29	66.35	uncharacterized protein LOC111472884 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]

BLAST of CSPI03G07300 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004134287.1	3.7e-56	100.00	uncharacterized protein LOC101222685 [Cucumis sativus] >KGN56359.1 hypothetical ...	[more]
XP_008437789.1	4.9e-48	90.48	PREDICTED: uncharacterized protein LOC103483122 [Cucumis melo]	[more]
KAA0048831.1	4.9e-48	90.48	uncharacterized protein E6C27_scaffold171G00440 [Cucumis melo var. makuwa] >TYK2...	[more]
XP_038904003.1	2.1e-43	79.63	uncharacterized protein LOC120090420 [Benincasa hispida]	[more]
XP_022924678.1	3.2e-39	73.21	uncharacterized protein LOC111432109 [Cucurbita moschata]	[more]

BLAST of CSPI03G07300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G60520.1	6.8e-24	46.15	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G02070.1	4.3e-18	41.54	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..87
None	No IPR available	PANTHER	PTHR33779	EXPRESSED PROTEIN	coord: 71..104
None	No IPR available	PANTHER	PTHR33779:SF11	OS02G0658200 PROTEIN	coord: 71..104
None	No IPR available	PANTHER	PTHR33779:SF11	OS02G0658200 PROTEIN	coord: 7..80
None	No IPR available	PANTHER	PTHR33779	EXPRESSED PROTEIN	coord: 7..80

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G07300.1	CSPI03G07300.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding