CSPI03G06660 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G06660
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Flocculation protein FLO11-like
Location	Chr3: 5870770 .. 5871714 (-)
RNA-Seq Expression	CSPI03G06660
Synteny	CSPI03G06660

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCTTCTGATTCTAGGTCTAAAGAGCAACTTGTTCCTCGTGTTGGCAAGATTGTTCATGTTCCTACTGCTTCTACATTTGTCTCTTCTCACAAACCTTCCATCTCGTCTCAACGACCTACGATGAGTTTTTCTAGGGTTCTTGCCCAAAATCGGGTTTCTATTGATTGTGTCTTTTATTCCTCTGACAATGATGATCGTGTGGTTTTGTTTGAGTTGTTACGGTATCCTCAATGTTGTTTGTTTCATGTTCTGATACAGTTCCTCCTACTTCAAATGTTGCTACTCCTGTTGCATCTACTGCCCCTCCCAAGGCTCATGTGTCTAATGCTTATGGTGCTTTGAGTTCTCCTTCTTGTTCTTCAAATATTGAGTCTCCTACAGTTGACCCTCCAGTTGATGCAACCGCTGACGATTTTTTTTATGCCTCTGAGTCTTTTTTTGGGACTAATTTTCACCATGCCTCATCTACTTCTAATGTTTATGATCTTGTTGGTTCTTCTTCTTCCTCTCCACTTGCTACAACTTTTGTACTTGCTTTTGCCTATGATGTCCCTACATTGCATCTGGTGTTCCTACACCTGCTTCTACTGTTGCTCCTGTTGGTACAACGTCTGGCACTTCTACCACCGCTTCTAGTCAATGAGGTTTTCACCATGATGTTGCCCTAACATCTAATACTACTTAAGTTCTCAGCCTGTCTCATCGTTTGCTCCTCCATATGTACCCACTTCTGTTTCAAAAATTCTCCATCATCCTTCTGTCAAAAGGCAAGAGGTGATCACTACTAAGGCTGGACAACGTAAGCTCTCTTTTAATATTCTTGTTGTGTCAATTGATGTAGTCTCATTTCATTCAGAAGATAGTGTGCATAAGTGGAAGTACGTGGTTCAACGTACAATTGCTGATGAGTTGAAAATCTCTCATAAGCATCACTCATGA

mRNA sequence

ATGGCTCCTTCTGATTCTAGGTCTAAAGAGCAACTTGTTCCTCGTGTTGGCAAGATTGTTCATGTTCCTACTGCTTCTACATTTGTCTCTTCTCACAAACCTTCCATCTCGTCTCAACGACCTACGATGAGTTTTTCTAGGGTTCTTGCCCAAAATCGGGTTTCTATTGATTTTCCTCCTACTTCAAATGTTGCTACTCCTGTTGCATCTACTGCCCCTCCCAAGGCTCATGTGTCTAATGCTTATGGTGCTTTGAGTTCTCCTTCTTGTTCTTCAAATATTGAGTCTCCTACAGTTGACCCTCCAGTTGATGCAACCGCTGACGATTTTTTTTATGCCTCTGAGTCTTTTTTTGGGACTAATTTTCACCATGCCTCATCTACTTCTAATGTTTATGATCTTGTTGGTTCTTCTTCTTCCTCTCCACTTGCTACAACTTTTGTACTTGCTTTTGCCTATGATGTCCCTACATTGCATCTGGTGTTCCTACACCTGCTTCTACTGTTGCTCCTGTTGGTACAACGTCTGGCACTTCTACCACCGCTTCTAGTCAATGAGCCTGTCTCATCGTTTGCTCCTCCATATGTACCCACTTCTGTTTCAAAAATTCTCCATCATCCTTCTGTCAAAAGGCAAGAGGTGATCACTACTAAGGCTGGACAACTCTCATTTCATTCAGAAGATAGTGTGCATAAGTGGAAGTACGTGGTTCAACGTACAATTGCTGATGAGTTGAAAATCTCTCATAAGCATCACTCATGA

Coding sequence (CDS)

ATGGCTCCTTCTGATTCTAGGTCTAAAGAGCAACTTGTTCCTCGTGTTGGCAAGATTGTTCATGTTCCTACTGCTTCTACATTTGTCTCTTCTCACAAACCTTCCATCTCGTCTCAACGACCTACGATGAGTTTTTCTAGGGTTCTTGCCCAAAATCGGGTTTCTATTGATTTTCCTCCTACTTCAAATGTTGCTACTCCTGTTGCATCTACTGCCCCTCCCAAGGCTCATGTGTCTAATGCTTATGGTGCTTTGAGTTCTCCTTCTTGTTCTTCAAATATTGAGTCTCCTACAGTTGACCCTCCAGTTGATGCAACCGCTGACGATTTTTTTTATGCCTCTGAGTCTTTTTTTGGGACTAATTTTCACCATGCCTCATCTACTTCTAATGTTTATGATCTTGTTGGTTCTTCTTCTTCCTCTCCACTTGCTACAACTTTTGTACTTGCTTTTGCCTATGATGTCCCTACATTGCATCTGGTGTTCCTACACCTGCTTCTACTGTTGCTCCTGTTGGTACAACGTCTGGCACTTCTACCACCGCTTCTAGTCAATGAGCCTGTCTCATCGTTTGCTCCTCCATATGTACCCACTTCTGTTTCAAAAATTCTCCATCATCCTTCTGTCAAAAGGCAAGAGGTGATCACTACTAAGGCTGGACAACTCTCATTTCATTCAGAAGATAGTGTGCATAAGTGGAAGTACGTGGTTCAACGTACAATTGCTGATGAGTTGAAAATCTCTCATAAGCATCACTCATGA

Protein sequence

MAPSDSRSKEQLVPRVGKIVHVPTASTFVSSHKPSISSQRPTMSFSRVLAQNRVSIDFPPTSNVATPVASTAPPKAHVSNAYGALSSPSCSSNIESPTVDPPVDATADDFFYASESFFGTNFHHASSTSNVYDLVGSSSSSPLATTFVLAFAYDVPTLHLVFLHLLLLLLLLVQRLALLPPLLVNEPVSSFAPPYVPTSVSKILHHPSVKRQEVITTKAGQLSFHSEDSVHKWKYVVQRTIADELKISHKHHS*

Homology

[Close]

BLAST of CSPI03G06660 vs. ExPASy TrEMBL
Match: A0A0A0L853 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G113380 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 8.8e-49
Identity = 108/122 (88.52%), Postives = 109/122 (89.34%), Query Frame = 0


Query: 1   MAPSDSRSKEQLVPRVGKIVHVPTASTFVSSHKPSISSQRPTMSFSRVLAQNRVSIDFPP 60
           M PSDSRSKEQLVPRVGKIVHVPTASTFVSSHKPSISSQRPTMSFSRVLAQN VS DFPP
Sbjct: 35  MTPSDSRSKEQLVPRVGKIVHVPTASTFVSSHKPSISSQRPTMSFSRVLAQNWVSTDFPP 94

Query: 61  TSNVATPVASTAPPKAHVSNAYGALSSPSCSSNIESPTVDPPVDATADDFFYASESFFGT 120
           TSNVATP+ASTAPPKAHVSNAYGALSSPSCSSNIESPTVD PVDAT DDFF     F G 
Sbjct: 95  TSNVATPIASTAPPKAHVSNAYGALSSPSCSSNIESPTVDHPVDATVDDFFMPLSLFLGL 154

Query: 121 NF 123
            F
Sbjct: 155 IF 156

[Close]

BLAST of CSPI03G06660 vs. ExPASy TrEMBL
Match: A0A5D3DR51 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1185G00190 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 4.1e-06
Identity = 49/110 (44.55%), Postives = 61/110 (55.45%), Query Frame = 0


Query: 1   MAPSDSRSKEQLVPRVGKIV----HVPTASTFVSSHKPSISSQRPTMSFSRVLAQNRVSI 60
           M+ S   + E ++P   K V    HV  ASTFV SHK S + Q PTMS +R+L    VS 
Sbjct: 1   MSTSSHSNFEPVIPPKPKSVIKPPHVSAASTFVLSHKLSSTFQPPTMSSTRLLRYLFVSR 60

Query: 61  D--FPPTSNVATPVASTAPPKAHVSNAYGALSSPSCSSNIESPTVDPPVD 105
               PPTS+VA  VA  AP    +S+A G   SPSC SN+ES  +D   D
Sbjct: 61  SDWVPPTSDVAASVAPIAPLTTLMSDAPGDSFSPSCYSNVESAHLDSSFD 110

[Close]

BLAST of CSPI03G06660 vs. ExPASy TrEMBL
Match: A0A5D3DU39 (Cell wall protein RBR3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold236G00080 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 4.6e-05
Identity = 30/57 (52.63%), Postives = 35/57 (61.40%), Query Frame = 0


Query: 211 RQEVITTKAGQ--------------LSFHSEDSVHKWKYVVQRTIADELKISHKHHS 254
           R +VITTK G               +SFH E+SVH+WKYVVQR  ADE+ IS KHHS
Sbjct: 176 RPKVITTKTGHRKVPPNIPSIPIDGISFHLEESVHRWKYVVQRRFADEVNISDKHHS 232

[Close]

BLAST of CSPI03G06660 vs. ExPASy TrEMBL
Match: A0A5D3B7L1 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G002300 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.8e-05
Identity = 33/74 (44.59%), Postives = 44/74 (59.46%), Query Frame = 0


Query: 197 PTSVSKILHHPSVKRQEV---ITTKAGQ--------------LSFHSEDSVHKWKYVVQR 254
           P+SV   L     K Q++   ITTKAG+              +SFH E+++H+WK+VVQR
Sbjct: 381 PSSVPTELKPARKKGQQIRRNITTKAGRKKIPLNIPSVPIDGISFHLEENIHRWKFVVQR 440

[Close]

BLAST of CSPI03G06660 vs. ExPASy TrEMBL
Match: A0A5D3CAA3 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G001350 PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 7.8e-05
Identity = 34/85 (40.00%), Postives = 45/85 (52.94%), Query Frame = 0


Query: 186 EPVSSFAPPYVP---TSVSKILHHPSVKRQEVITTKAG--------------QLSFHSED 245
           E  S F+ P  P    + S   H P    Q VI+TKAG              ++SFHSE+
Sbjct: 811 EGPSEFSTPVSPPAHVASSSGFHRPPTNGQRVISTKAGRRKVPPNVSSVPIDEVSFHSEE 870

Query: 246 SVHKWKYVVQRTIADELKISHKHHS 254
             HKWKYVV+R IADE  I+ +++S
Sbjct: 871 GAHKWKYVVKRRIADEANIADRYNS 895

[Close]

BLAST of CSPI03G06660 vs. NCBI nr
Match: KGN56296.1 (hypothetical protein Csa_011479 [Cucumis sativus])

HSP 1 Score: 203.8 bits (517), Expect = 1.8e-48
Identity = 108/122 (88.52%), Postives = 109/122 (89.34%), Query Frame = 0


Query: 1   MAPSDSRSKEQLVPRVGKIVHVPTASTFVSSHKPSISSQRPTMSFSRVLAQNRVSIDFPP 60
           M PSDSRSKEQLVPRVGKIVHVPTASTFVSSHKPSISSQRPTMSFSRVLAQN VS DFPP
Sbjct: 35  MTPSDSRSKEQLVPRVGKIVHVPTASTFVSSHKPSISSQRPTMSFSRVLAQNWVSTDFPP 94

Query: 61  TSNVATPVASTAPPKAHVSNAYGALSSPSCSSNIESPTVDPPVDATADDFFYASESFFGT 120
           TSNVATP+ASTAPPKAHVSNAYGALSSPSCSSNIESPTVD PVDAT DDFF     F G 
Sbjct: 95  TSNVATPIASTAPPKAHVSNAYGALSSPSCSSNIESPTVDHPVDATVDDFFMPLSLFLGL 154

Query: 121 NF 123
            F
Sbjct: 155 IF 156

[Close]

BLAST of CSPI03G06660 vs. NCBI nr
Match: KAA0068080.1 (hypothetical protein E6C27_scaffold238G00300 [Cucumis melo var. makuwa] >TYK26064.1 hypothetical protein E5676_scaffold1185G00190 [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 8.5e-06
Identity = 49/110 (44.55%), Postives = 61/110 (55.45%), Query Frame = 0


Query: 1   MAPSDSRSKEQLVPRVGKIV----HVPTASTFVSSHKPSISSQRPTMSFSRVLAQNRVSI 60
           M+ S   + E ++P   K V    HV  ASTFV SHK S + Q PTMS +R+L    VS 
Sbjct: 1   MSTSSHSNFEPVIPPKPKSVIKPPHVSAASTFVLSHKLSSTFQPPTMSSTRLLRYLFVSR 60

Query: 61  D--FPPTSNVATPVASTAPPKAHVSNAYGALSSPSCSSNIESPTVDPPVD 105
               PPTS+VA  VA  AP    +S+A G   SPSC SN+ES  +D   D
Sbjct: 61  SDWVPPTSDVAASVAPIAPLTTLMSDAPGDSFSPSCYSNVESAHLDSSFD 110

[Close]

BLAST of CSPI03G06660 vs. NCBI nr
Match: TYK27163.1 (cell wall protein RBR3-like [Cucumis melo var. makuwa])

HSP 1 Score: 58.5 bits (140), Expect = 9.4e-05
Identity = 30/57 (52.63%), Postives = 35/57 (61.40%), Query Frame = 0


Query: 211 RQEVITTKAGQ--------------LSFHSEDSVHKWKYVVQRTIADELKISHKHHS 254
           R +VITTK G               +SFH E+SVH+WKYVVQR  ADE+ IS KHHS
Sbjct: 176 RPKVITTKTGHRKVPPNIPSIPIDGISFHLEESVHRWKYVVQRRFADEVNISDKHHS 232

[Close]

BLAST of CSPI03G06660 vs. NCBI nr
Match: KAA0036856.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ95920.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 1.6e-04
Identity = 33/74 (44.59%), Postives = 44/74 (59.46%), Query Frame = 0


Query: 197 PTSVSKILHHPSVKRQEV---ITTKAGQ--------------LSFHSEDSVHKWKYVVQR 254
           P+SV   L     K Q++   ITTKAG+              +SFH E+++H+WK+VVQR
Sbjct: 381 PSSVPTELKPARKKGQQIRRNITTKAGRKKIPLNIPSVPIDGISFHLEENIHRWKFVVQR 440

[Close]

BLAST of CSPI03G06660 vs. NCBI nr
Match: TYK07239.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 57.8 bits (138), Expect = 1.6e-04
Identity = 34/85 (40.00%), Postives = 45/85 (52.94%), Query Frame = 0


Query: 186 EPVSSFAPPYVP---TSVSKILHHPSVKRQEVITTKAG--------------QLSFHSED 245
           E  S F+ P  P    + S   H P    Q VI+TKAG              ++SFHSE+
Sbjct: 811 EGPSEFSTPVSPPAHVASSSGFHRPPTNGQRVISTKAGRRKVPPNVSSVPIDEVSFHSEE 870

Query: 246 SVHKWKYVVQRTIADELKISHKHHS 254
             HKWKYVV+R IADE  I+ +++S
Sbjct: 871 GAHKWKYVVKRRIADEANIADRYNS 895

The following BLAST results are available for this feature:

BLAST of CSPI03G06660 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G06660 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L853	8.8e-49	88.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G113380 PE=4 SV=1	[more]
A0A5D3DR51	4.1e-06	44.55	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DU39	4.6e-05	52.63	Cell wall protein RBR3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3B7L1	7.8e-05	44.59	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G...	[more]
A0A5D3CAA3	7.8e-05	40.00	Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of CSPI03G06660 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56296.1	1.8e-48	88.52	hypothetical protein Csa_011479 [Cucumis sativus]	[more]
KAA0068080.1	8.5e-06	44.55	hypothetical protein E6C27_scaffold238G00300 [Cucumis melo var. makuwa] >TYK2606...	[more]
TYK27163.1	9.4e-05	52.63	cell wall protein RBR3-like [Cucumis melo var. makuwa]	[more]
KAA0036856.1	1.6e-04	44.59	gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ95920.1 gag-pol polyprotein [...	[more]
TYK07239.1	1.6e-04	40.00	flocculation protein FLO11-like [Cucumis melo var. makuwa]	[more]

BLAST of CSPI03G06660 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G06660.1	CSPI03G06660.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane