CSPI03G06260 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G06260
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr3: 5389825 .. 5390227 (-)
RNA-Seq Expression	CSPI03G06260
Synteny	CSPI03G06260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATGCAAAACAGGATCTGAGCGACTGGTTAGGAGAGGTGAGCGTCGACTTGCAGGCAGGACTGGAAGAGACAGAGACGTGTGCGGCTTGAAAGATGGAGGCAACCGGGCAATTGACAAACCGAGAGAGAAACCCTACGCGAACGGTTGGATGAACCGATGGCTTCGACTGAGCTTGCACGCGACGCAGCTGATGAAGATAGGGCGATGCTTCAATGGGTTGTACGACTCAAACGGGACAATCGGCTTCGTGGAGGCTATGGCTTAAACGGACGGAAGTGACTCGACTAACGAAGACGGTAGTGGGTGGGGGAGCAGTTGATCAGAAAGAAGAAGAAAGAAAGCAGAGGGTCAGCCGACTGAAACACACGAAGAAGAAGAAGAAGGAAGAAGGTGAATAG

mRNA sequence

ATGGCATGCAAAACAGGATCTGAGCGACTGGTTAGGAGAGGTGAGCGTCGACTTGCAGGCAGGACTGGAAGAGACAGAGACGTGTGCGGCTTGAAAGATGGAGGCAACCGGGCAATTGACAAACCGAGAGAGAAACCCTACGCGAACGGTTGGATGAACCGATGGCTTCGACTGAGCTTGCACGCGACGCAGCTGATGAAGATAGGGCGATGCTTCAATGGGTTGCTATGGCTTAAACGGACGGAAGTGACTCGACTAACGAAGACGGTAGTGGGTGGGGGAGCAGTTGATCAGAAAGAAGAAGAAAGAAAGCAGAGGGTCAGCCGACTGAAACACACGAAGAAGAAGAAGAAGGAAGAAGGTGAATAG

Coding sequence (CDS)

ATGGCATGCAAAACAGGATCTGAGCGACTGGTTAGGAGAGGTGAGCGTCGACTTGCAGGCAGGACTGGAAGAGACAGAGACGTGTGCGGCTTGAAAGATGGAGGCAACCGGGCAATTGACAAACCGAGAGAGAAACCCTACGCGAACGGTTGGATGAACCGATGGCTTCGACTGAGCTTGCACGCGACGCAGCTGATGAAGATAGGGCGATGCTTCAATGGGTTGCTATGGCTTAAACGGACGGAAGTGACTCGACTAACGAAGACGGTAGTGGGTGGGGGAGCAGTTGATCAGAAAGAAGAAGAAAGAAAGCAGAGGGTCAGCCGACTGAAACACACGAAGAAGAAGAAGAAGGAAGAAGGTGAATAG

Protein sequence

MACKTGSERLVRRGERRLAGRTGRDRDVCGLKDGGNRAIDKPREKPYANGWMNRWLRLSLHATQLMKIGRCFNGLLWLKRTEVTRLTKTVVGGGAVDQKEEERKQRVSRLKHTKKKKKEEGE*

Homology

[Close]

BLAST of CSPI03G06260 vs. ExPASy TrEMBL
Match: A0A0A0L801 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G108510 PE=4 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 8.9e-31
Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 7  SERLVRRGERRLAGRTGRDRDVCGLKDGGNRAIDKPREKPYANGWMNRWLRLSLHATQLM 66
          SERLVRRGERRLAGRTGRDRDVCGLKDGGNRAIDKPREKPYANGWMNRWLRLSL ATQLM
Sbjct: 5  SERLVRRGERRLAGRTGRDRDVCGLKDGGNRAIDKPREKPYANGWMNRWLRLSLPATQLM 64

Query: 67 KIGRCFNGL 76
          KIGRCFNGL
Sbjct: 65 KIGRCFNGL 73

[Close]

BLAST of CSPI03G06260 vs. NCBI nr
Match: KGN56251.1 (hypothetical protein Csa_011046 [Cucumis sativus])

HSP 1 Score: 142.9 bits (359), Expect = 1.8e-30
Identity = 68/69 (98.55%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 7  SERLVRRGERRLAGRTGRDRDVCGLKDGGNRAIDKPREKPYANGWMNRWLRLSLHATQLM 66
          SERLVRRGERRLAGRTGRDRDVCGLKDGGNRAIDKPREKPYANGWMNRWLRLSL ATQLM
Sbjct: 5  SERLVRRGERRLAGRTGRDRDVCGLKDGGNRAIDKPREKPYANGWMNRWLRLSLPATQLM 64

Query: 67 KIGRCFNGL 76
          KIGRCFNGL
Sbjct: 65 KIGRCFNGL 73

The following BLAST results are available for this feature:

BLAST of CSPI03G06260 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G06260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L801	8.9e-31	98.55	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G108510 PE=4 SV=1	[more]

BLAST of CSPI03G06260 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN56251.1	1.8e-30	98.55	hypothetical protein Csa_011046 [Cucumis sativus]	[more]

BLAST of CSPI03G06260 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 92..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..44

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G06260.1	CSPI03G06260.1	mRNA