Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTGTGATGAAAGGGTTGAAAAGAAATCCAAAGGACTAGCTTTTCAAGTCTTCTCATCTAAGGATCAAGTGATGAAAAAGAAGACAAATTCATACGAGAATTTAGCTGAATCCATATCTCTCCTGGCAAAGAAGTTTGGAAGAGCTCTTAAGAGATGGGATAAGAGATTAGACCCAAGAGGAAATTATGTCGACCCTTATGTCAAAAATGTTGGTAGCAGTGGCGGGAACAAGTCGCTCAAATCTAAAAAAATCTTTTGATCAAGGAGGCAATCTCAATCAAAATTGGAGTAGCAACCAAACGATTAAAAATGAATCTAGAAGATGTTGTGAATGCAATAGGTTCAAACATTTTCATGCTAAATGTCCTAACTACTTACGGAAACAAGGACAGTGGTATTTTGTCATGCTATCTGATGAAGAGACTCATTCATGTATTGATTCGGATGATGAAGTTCATGCCTTAATAGATAAACTTGTTATTCATGATACATGTTAA
mRNA sequence
ATGTTTTGTGATGAAAGGGTTGAAAAGAAATCCAAAGGACTAGCTTTTCAAGTCTTCTCATCTAAGGATCAAGTGATGAAAAAGAAGACAAATTCATACGAGAATTTAGCTGAATCCATATCTCTCCTGGCAAAGAAGTTTGGAAGAGCTCTTAAGAGATGGGATAAGAGATTAGACCCAAGAGGAAATTATGTCGACCCTTATGTCAAAAATGTTGGTAGCAGTGGCGGGAACAAGTTCAAACATTTTCATGCTAAATGTCCTAACTACTTACGGAAACAAGGACAGTGGTATTTTGTCATGCTATCTGATGAAGAGACTCATTCATGTATTGATTCGGATGATGAAGTTCATGCCTTAATAGATAAACTTGTTATTCATGATACATGTTAA
Coding sequence (CDS)
ATGTTTTGTGATGAAAGGGTTGAAAAGAAATCCAAAGGACTAGCTTTTCAAGTCTTCTCATCTAAGGATCAAGTGATGAAAAAGAAGACAAATTCATACGAGAATTTAGCTGAATCCATATCTCTCCTGGCAAAGAAGTTTGGAAGAGCTCTTAAGAGATGGGATAAGAGATTAGACCCAAGAGGAAATTATGTCGACCCTTATGTCAAAAATGTTGGTAGCAGTGGCGGGAACAAGTTCAAACATTTTCATGCTAAATGTCCTAACTACTTACGGAAACAAGGACAGTGGTATTTTGTCATGCTATCTGATGAAGAGACTCATTCATGTATTGATTCGGATGATGAAGTTCATGCCTTAATAGATAAACTTGTTATTCATGATACATGTTAA
Protein sequence
MFCDERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWDKRLDPRGNYVDPYVKNVGSSGGNKFKHFHAKCPNYLRKQGQWYFVMLSDEETHSCIDSDDEVHALIDKLVIHDTC*
Homology
BLAST of CSPI03G05510 vs. ExPASy TrEMBL
Match:
A0A0A0L327 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G088950 PE=4 SV=1)
HSP 1 Score: 270.8 bits (691), Expect = 3.0e-69
Identity = 128/130 (98.46%), Postives = 129/130 (99.23%), Query Frame = 0
Query: 1 MFCDERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWDKRLDP 60
MFCDERVEKKSKGLAFQVFSSKDQV+KKKTNSYENLAESISLLAKKFGRALKRWDKRLDP
Sbjct: 1 MFCDERVEKKSKGLAFQVFSSKDQVLKKKTNSYENLAESISLLAKKFGRALKRWDKRLDP 60
Query: 61 RGNYVDPYVKNVGSSGGNKFKHFHAKCPNYLRKQGQWYFVMLSDEETHSCIDSDDEVHAL 120
RGNYVDPYVKNVGSSGGNKFKHFH KCPNYLRKQGQWYFVMLSDEETHSCIDSDDEVHAL
Sbjct: 61 RGNYVDPYVKNVGSSGGNKFKHFHVKCPNYLRKQGQWYFVMLSDEETHSCIDSDDEVHAL 120
Query: 121 IDKLVIHDTC 131
IDKLVIHDTC
Sbjct: 121 IDKLVIHDTC 130
BLAST of CSPI03G05510 vs. ExPASy TrEMBL
Match:
A0A5A7TGP5 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold943G00120 PE=4 SV=1)
HSP 1 Score: 65.9 bits (159), Expect = 1.5e-07
Identity = 46/133 (34.59%), Postives = 70/133 (52.63%), Query Frame = 0
Query: 1 MFCDERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWD----K 60
M R +KK KG+AF+ + +++ K++S N+ ESI+LL K+F + +KR D K
Sbjct: 182 MVISNREDKKGKGIAFK-STYEEESTDNKSSSEVNVNESIALLTKQFSKVVKRMDGENFK 241
Query: 61 RLDPRGNYVDPYVKNVGSSGGNKFKHFHAKCPNYLRKQGQWYFVMLSDEETHSCIDSDDE 120
R D G + GG F H+ A+CP +LRKQ + + LSDEET + D
Sbjct: 242 RRDGEGRTFKCW-----ECGG--FGHYQAECPTFLRKQKKNFRATLSDEETDDSEEDDGF 301
Query: 121 VHALIDKLVIHDT 130
+A I + D+
Sbjct: 302 TNAFIINITKTDS 306
BLAST of CSPI03G05510 vs. ExPASy TrEMBL
Match:
A0A5D3BNW5 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G001810 PE=4 SV=1)
HSP 1 Score: 65.9 bits (159), Expect = 1.5e-07
Identity = 46/133 (34.59%), Postives = 70/133 (52.63%), Query Frame = 0
Query: 1 MFCDERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWD----K 60
M R +KK KG+AF+ + +++ K++S N+ ESI+LL K+F + +KR D K
Sbjct: 132 MVISNREDKKGKGIAFK-STYEEESTDNKSSSEVNVNESIALLTKQFSKVVKRMDGENFK 191
Query: 61 RLDPRGNYVDPYVKNVGSSGGNKFKHFHAKCPNYLRKQGQWYFVMLSDEETHSCIDSDDE 120
R D G + GG F H+ A+CP +LRKQ + + LSDEET + D
Sbjct: 192 RRDGEGRTFKCW-----ECGG--FGHYQAECPTFLRKQKKNFRATLSDEETDDSEEDDGF 251
Query: 121 VHALIDKLVIHDT 130
+A I + D+
Sbjct: 252 TNAFIINITKTDS 256
BLAST of CSPI03G05510 vs. ExPASy TrEMBL
Match:
A0A5D3BPP2 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00790 PE=4 SV=1)
HSP 1 Score: 56.2 bits (134), Expect = 1.2e-04
Identity = 43/144 (29.86%), Postives = 66/144 (45.83%), Query Frame = 0
Query: 1 MFCDERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWDKRLDP 60
M R +KK KG+AF++ ++ K TN N+ ESI+LL F + K + ++
Sbjct: 164 MTISNRDDKKGKGVAFKIVYEEETPEHKTTNEV-NVNESIALLTNFFSKVKK--FRNMNT 223
Query: 61 RGNYV---------DPYVKNVGSSGGNKFK------HFHAKCPNYLRKQGQWYFVMLSDE 120
G V D K K++ H+ AKCP YLRKQ + + DE
Sbjct: 224 IGARVREQNSFRRRDENFKRKPEERTFKYRERGGIGHYQAKCPTYLRKQKKSFCATFFDE 283
Query: 121 ETHSCIDSDDEVHALIDKLVIHDT 130
E+ + D+ +A I +L HD+
Sbjct: 284 ESDDSEEEDEYTNAFISRLTEHDS 304
BLAST of CSPI03G05510 vs. ExPASy TrEMBL
Match:
A0A5A7SWB7 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00710 PE=4 SV=1)
HSP 1 Score: 55.8 bits (133), Expect = 1.5e-04
Identity = 40/127 (31.50%), Postives = 65/127 (51.18%), Query Frame = 0
Query: 5 ERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWDKRLDPRGNY 64
+R KK KG+AF+ ++ + +++ N+ ESI+LL ++F A ++ K ++
Sbjct: 226 DRESKKGKGIAFKSTHVDEEAV---SDTEANMDESIALLTEQFTNAFQKL-KNMNATNRR 285
Query: 65 VDPYVK------------NVGSSGGNKFKHFHAKCPNYLRKQGQWYFVMLSDEETHSCID 120
D Y+K GS G H+ A+CP +LRKQ + V LSDEE+ D
Sbjct: 286 SDGYIKKKEGDRRIFRCRECGSIG-----HYQAECPTFLRKQKN-FCVTLSDEESGDSRD 342
BLAST of CSPI03G05510 vs. NCBI nr
Match:
KGN56173.1 (hypothetical protein Csa_010893 [Cucumis sativus])
HSP 1 Score: 270.8 bits (691), Expect = 6.2e-69
Identity = 128/130 (98.46%), Postives = 129/130 (99.23%), Query Frame = 0
Query: 1 MFCDERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWDKRLDP 60
MFCDERVEKKSKGLAFQVFSSKDQV+KKKTNSYENLAESISLLAKKFGRALKRWDKRLDP
Sbjct: 1 MFCDERVEKKSKGLAFQVFSSKDQVLKKKTNSYENLAESISLLAKKFGRALKRWDKRLDP 60
Query: 61 RGNYVDPYVKNVGSSGGNKFKHFHAKCPNYLRKQGQWYFVMLSDEETHSCIDSDDEVHAL 120
RGNYVDPYVKNVGSSGGNKFKHFH KCPNYLRKQGQWYFVMLSDEETHSCIDSDDEVHAL
Sbjct: 61 RGNYVDPYVKNVGSSGGNKFKHFHVKCPNYLRKQGQWYFVMLSDEETHSCIDSDDEVHAL 120
Query: 121 IDKLVIHDTC 131
IDKLVIHDTC
Sbjct: 121 IDKLVIHDTC 130
BLAST of CSPI03G05510 vs. NCBI nr
Match:
KAA0042403.1 (gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 65.9 bits (159), Expect = 3.1e-07
Identity = 46/133 (34.59%), Postives = 70/133 (52.63%), Query Frame = 0
Query: 1 MFCDERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWD----K 60
M R +KK KG+AF+ + +++ K++S N+ ESI+LL K+F + +KR D K
Sbjct: 182 MVISNREDKKGKGIAFK-STYEEESTDNKSSSEVNVNESIALLTKQFSKVVKRMDGENFK 241
Query: 61 RLDPRGNYVDPYVKNVGSSGGNKFKHFHAKCPNYLRKQGQWYFVMLSDEETHSCIDSDDE 120
R D G + GG F H+ A+CP +LRKQ + + LSDEET + D
Sbjct: 242 RRDGEGRTFKCW-----ECGG--FGHYQAECPTFLRKQKKNFRATLSDEETDDSEEDDGF 301
Query: 121 VHALIDKLVIHDT 130
+A I + D+
Sbjct: 302 TNAFIINITKTDS 306
BLAST of CSPI03G05510 vs. NCBI nr
Match:
TYK00987.1 (gag-pol polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 65.9 bits (159), Expect = 3.1e-07
Identity = 46/133 (34.59%), Postives = 70/133 (52.63%), Query Frame = 0
Query: 1 MFCDERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWD----K 60
M R +KK KG+AF+ + +++ K++S N+ ESI+LL K+F + +KR D K
Sbjct: 132 MVISNREDKKGKGIAFK-STYEEESTDNKSSSEVNVNESIALLTKQFSKVVKRMDGENFK 191
Query: 61 RLDPRGNYVDPYVKNVGSSGGNKFKHFHAKCPNYLRKQGQWYFVMLSDEETHSCIDSDDE 120
R D G + GG F H+ A+CP +LRKQ + + LSDEET + D
Sbjct: 192 RRDGEGRTFKCW-----ECGG--FGHYQAECPTFLRKQKKNFRATLSDEETDDSEEDDGF 251
Query: 121 VHALIDKLVIHDT 130
+A I + D+
Sbjct: 252 TNAFIINITKTDS 256
BLAST of CSPI03G05510 vs. NCBI nr
Match:
TYK01287.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 56.2 bits (134), Expect = 2.4e-04
Identity = 43/144 (29.86%), Postives = 66/144 (45.83%), Query Frame = 0
Query: 1 MFCDERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWDKRLDP 60
M R +KK KG+AF++ ++ K TN N+ ESI+LL F + K + ++
Sbjct: 164 MTISNRDDKKGKGVAFKIVYEEETPEHKTTNEV-NVNESIALLTNFFSKVKK--FRNMNT 223
Query: 61 RGNYV---------DPYVKNVGSSGGNKFK------HFHAKCPNYLRKQGQWYFVMLSDE 120
G V D K K++ H+ AKCP YLRKQ + + DE
Sbjct: 224 IGARVREQNSFRRRDENFKRKPEERTFKYRERGGIGHYQAKCPTYLRKQKKSFCATFFDE 283
Query: 121 ETHSCIDSDDEVHALIDKLVIHDT 130
E+ + D+ +A I +L HD+
Sbjct: 284 ESDDSEEEDEYTNAFISRLTEHDS 304
BLAST of CSPI03G05510 vs. NCBI nr
Match:
TYJ95661.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa])
HSP 1 Score: 55.8 bits (133), Expect = 3.2e-04
Identity = 40/127 (31.50%), Postives = 65/127 (51.18%), Query Frame = 0
Query: 5 ERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWDKRLDPRGNY 64
+R KK KG+AF+ ++ + +++ N+ ESI+LL ++F A ++ K ++
Sbjct: 226 DRESKKGKGIAFKSTHVDEEAV---SDTEANMDESIALLTEQFTNAFQKL-KNMNATNRR 285
Query: 65 VDPYVK------------NVGSSGGNKFKHFHAKCPNYLRKQGQWYFVMLSDEETHSCID 120
D Y+K GS G H+ A+CP +LRKQ + V LSDEE+ D
Sbjct: 286 SDGYIKKKEGDRRIFRCRECGSIG-----HYQAECPTFLRKQKN-FCVTLSDEESGDSRD 342
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0L327 | 3.0e-69 | 98.46 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G088950 PE=4 SV=1 | [more] |
A0A5A7TGP5 | 1.5e-07 | 34.59 | Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold943G... | [more] |
A0A5D3BNW5 | 1.5e-07 | 34.59 | Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G... | [more] |
A0A5D3BPP2 | 1.2e-04 | 29.86 | Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... | [more] |
A0A5A7SWB7 | 1.5e-04 | 31.50 | Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff... | [more] |
Match Name | E-value | Identity | Description | |
KGN56173.1 | 6.2e-69 | 98.46 | hypothetical protein Csa_010893 [Cucumis sativus] | [more] |
KAA0042403.1 | 3.1e-07 | 34.59 | gag-pol polyprotein [Cucumis melo var. makuwa] | [more] |
TYK00987.1 | 3.1e-07 | 34.59 | gag-pol polyprotein [Cucumis melo var. makuwa] | [more] |
TYK01287.1 | 2.4e-04 | 29.86 | gag-proteinase polyprotein [Cucumis melo var. makuwa] | [more] |
TYJ95661.1 | 3.2e-04 | 31.50 | gag-proteinase polyprotein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |