CSPI03G05510 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G05510
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionGag-pol polyprotein
LocationChr3: 4670022 .. 4670523 (+)
RNA-Seq ExpressionCSPI03G05510
SyntenyCSPI03G05510
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTTGTGATGAAAGGGTTGAAAAGAAATCCAAAGGACTAGCTTTTCAAGTCTTCTCATCTAAGGATCAAGTGATGAAAAAGAAGACAAATTCATACGAGAATTTAGCTGAATCCATATCTCTCCTGGCAAAGAAGTTTGGAAGAGCTCTTAAGAGATGGGATAAGAGATTAGACCCAAGAGGAAATTATGTCGACCCTTATGTCAAAAATGTTGGTAGCAGTGGCGGGAACAAGTCGCTCAAATCTAAAAAAATCTTTTGATCAAGGAGGCAATCTCAATCAAAATTGGAGTAGCAACCAAACGATTAAAAATGAATCTAGAAGATGTTGTGAATGCAATAGGTTCAAACATTTTCATGCTAAATGTCCTAACTACTTACGGAAACAAGGACAGTGGTATTTTGTCATGCTATCTGATGAAGAGACTCATTCATGTATTGATTCGGATGATGAAGTTCATGCCTTAATAGATAAACTTGTTATTCATGATACATGTTAA

mRNA sequence

ATGTTTTGTGATGAAAGGGTTGAAAAGAAATCCAAAGGACTAGCTTTTCAAGTCTTCTCATCTAAGGATCAAGTGATGAAAAAGAAGACAAATTCATACGAGAATTTAGCTGAATCCATATCTCTCCTGGCAAAGAAGTTTGGAAGAGCTCTTAAGAGATGGGATAAGAGATTAGACCCAAGAGGAAATTATGTCGACCCTTATGTCAAAAATGTTGGTAGCAGTGGCGGGAACAAGTTCAAACATTTTCATGCTAAATGTCCTAACTACTTACGGAAACAAGGACAGTGGTATTTTGTCATGCTATCTGATGAAGAGACTCATTCATGTATTGATTCGGATGATGAAGTTCATGCCTTAATAGATAAACTTGTTATTCATGATACATGTTAA

Coding sequence (CDS)

ATGTTTTGTGATGAAAGGGTTGAAAAGAAATCCAAAGGACTAGCTTTTCAAGTCTTCTCATCTAAGGATCAAGTGATGAAAAAGAAGACAAATTCATACGAGAATTTAGCTGAATCCATATCTCTCCTGGCAAAGAAGTTTGGAAGAGCTCTTAAGAGATGGGATAAGAGATTAGACCCAAGAGGAAATTATGTCGACCCTTATGTCAAAAATGTTGGTAGCAGTGGCGGGAACAAGTTCAAACATTTTCATGCTAAATGTCCTAACTACTTACGGAAACAAGGACAGTGGTATTTTGTCATGCTATCTGATGAAGAGACTCATTCATGTATTGATTCGGATGATGAAGTTCATGCCTTAATAGATAAACTTGTTATTCATGATACATGTTAA

Protein sequence

MFCDERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWDKRLDPRGNYVDPYVKNVGSSGGNKFKHFHAKCPNYLRKQGQWYFVMLSDEETHSCIDSDDEVHALIDKLVIHDTC*
Homology
BLAST of CSPI03G05510 vs. ExPASy TrEMBL
Match: A0A0A0L327 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G088950 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 3.0e-69
Identity = 128/130 (98.46%), Postives = 129/130 (99.23%), Query Frame = 0

Query: 1   MFCDERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWDKRLDP 60
           MFCDERVEKKSKGLAFQVFSSKDQV+KKKTNSYENLAESISLLAKKFGRALKRWDKRLDP
Sbjct: 1   MFCDERVEKKSKGLAFQVFSSKDQVLKKKTNSYENLAESISLLAKKFGRALKRWDKRLDP 60

Query: 61  RGNYVDPYVKNVGSSGGNKFKHFHAKCPNYLRKQGQWYFVMLSDEETHSCIDSDDEVHAL 120
           RGNYVDPYVKNVGSSGGNKFKHFH KCPNYLRKQGQWYFVMLSDEETHSCIDSDDEVHAL
Sbjct: 61  RGNYVDPYVKNVGSSGGNKFKHFHVKCPNYLRKQGQWYFVMLSDEETHSCIDSDDEVHAL 120

Query: 121 IDKLVIHDTC 131
           IDKLVIHDTC
Sbjct: 121 IDKLVIHDTC 130

BLAST of CSPI03G05510 vs. ExPASy TrEMBL
Match: A0A5A7TGP5 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold943G00120 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.5e-07
Identity = 46/133 (34.59%), Postives = 70/133 (52.63%), Query Frame = 0

Query: 1   MFCDERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWD----K 60
           M    R +KK KG+AF+  + +++    K++S  N+ ESI+LL K+F + +KR D    K
Sbjct: 182 MVISNREDKKGKGIAFK-STYEEESTDNKSSSEVNVNESIALLTKQFSKVVKRMDGENFK 241

Query: 61  RLDPRGNYVDPYVKNVGSSGGNKFKHFHAKCPNYLRKQGQWYFVMLSDEETHSCIDSDDE 120
           R D  G     +       GG  F H+ A+CP +LRKQ + +   LSDEET    + D  
Sbjct: 242 RRDGEGRTFKCW-----ECGG--FGHYQAECPTFLRKQKKNFRATLSDEETDDSEEDDGF 301

Query: 121 VHALIDKLVIHDT 130
            +A I  +   D+
Sbjct: 302 TNAFIINITKTDS 306

BLAST of CSPI03G05510 vs. ExPASy TrEMBL
Match: A0A5D3BNW5 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G001810 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.5e-07
Identity = 46/133 (34.59%), Postives = 70/133 (52.63%), Query Frame = 0

Query: 1   MFCDERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWD----K 60
           M    R +KK KG+AF+  + +++    K++S  N+ ESI+LL K+F + +KR D    K
Sbjct: 132 MVISNREDKKGKGIAFK-STYEEESTDNKSSSEVNVNESIALLTKQFSKVVKRMDGENFK 191

Query: 61  RLDPRGNYVDPYVKNVGSSGGNKFKHFHAKCPNYLRKQGQWYFVMLSDEETHSCIDSDDE 120
           R D  G     +       GG  F H+ A+CP +LRKQ + +   LSDEET    + D  
Sbjct: 192 RRDGEGRTFKCW-----ECGG--FGHYQAECPTFLRKQKKNFRATLSDEETDDSEEDDGF 251

Query: 121 VHALIDKLVIHDT 130
            +A I  +   D+
Sbjct: 252 TNAFIINITKTDS 256

BLAST of CSPI03G05510 vs. ExPASy TrEMBL
Match: A0A5D3BPP2 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00790 PE=4 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.2e-04
Identity = 43/144 (29.86%), Postives = 66/144 (45.83%), Query Frame = 0

Query: 1   MFCDERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWDKRLDP 60
           M    R +KK KG+AF++   ++    K TN   N+ ESI+LL   F +  K   + ++ 
Sbjct: 164 MTISNRDDKKGKGVAFKIVYEEETPEHKTTNEV-NVNESIALLTNFFSKVKK--FRNMNT 223

Query: 61  RGNYV---------DPYVKNVGSSGGNKFK------HFHAKCPNYLRKQGQWYFVMLSDE 120
            G  V         D   K        K++      H+ AKCP YLRKQ + +     DE
Sbjct: 224 IGARVREQNSFRRRDENFKRKPEERTFKYRERGGIGHYQAKCPTYLRKQKKSFCATFFDE 283

Query: 121 ETHSCIDSDDEVHALIDKLVIHDT 130
           E+    + D+  +A I +L  HD+
Sbjct: 284 ESDDSEEEDEYTNAFISRLTEHDS 304

BLAST of CSPI03G05510 vs. ExPASy TrEMBL
Match: A0A5A7SWB7 (Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold261G00710 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.5e-04
Identity = 40/127 (31.50%), Postives = 65/127 (51.18%), Query Frame = 0

Query: 5   ERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWDKRLDPRGNY 64
           +R  KK KG+AF+     ++ +   +++  N+ ESI+LL ++F  A ++  K ++     
Sbjct: 226 DRESKKGKGIAFKSTHVDEEAV---SDTEANMDESIALLTEQFTNAFQKL-KNMNATNRR 285

Query: 65  VDPYVK------------NVGSSGGNKFKHFHAKCPNYLRKQGQWYFVMLSDEETHSCID 120
            D Y+K              GS G     H+ A+CP +LRKQ   + V LSDEE+    D
Sbjct: 286 SDGYIKKKEGDRRIFRCRECGSIG-----HYQAECPTFLRKQKN-FCVTLSDEESGDSRD 342

BLAST of CSPI03G05510 vs. NCBI nr
Match: KGN56173.1 (hypothetical protein Csa_010893 [Cucumis sativus])

HSP 1 Score: 270.8 bits (691), Expect = 6.2e-69
Identity = 128/130 (98.46%), Postives = 129/130 (99.23%), Query Frame = 0

Query: 1   MFCDERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWDKRLDP 60
           MFCDERVEKKSKGLAFQVFSSKDQV+KKKTNSYENLAESISLLAKKFGRALKRWDKRLDP
Sbjct: 1   MFCDERVEKKSKGLAFQVFSSKDQVLKKKTNSYENLAESISLLAKKFGRALKRWDKRLDP 60

Query: 61  RGNYVDPYVKNVGSSGGNKFKHFHAKCPNYLRKQGQWYFVMLSDEETHSCIDSDDEVHAL 120
           RGNYVDPYVKNVGSSGGNKFKHFH KCPNYLRKQGQWYFVMLSDEETHSCIDSDDEVHAL
Sbjct: 61  RGNYVDPYVKNVGSSGGNKFKHFHVKCPNYLRKQGQWYFVMLSDEETHSCIDSDDEVHAL 120

Query: 121 IDKLVIHDTC 131
           IDKLVIHDTC
Sbjct: 121 IDKLVIHDTC 130

BLAST of CSPI03G05510 vs. NCBI nr
Match: KAA0042403.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 3.1e-07
Identity = 46/133 (34.59%), Postives = 70/133 (52.63%), Query Frame = 0

Query: 1   MFCDERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWD----K 60
           M    R +KK KG+AF+  + +++    K++S  N+ ESI+LL K+F + +KR D    K
Sbjct: 182 MVISNREDKKGKGIAFK-STYEEESTDNKSSSEVNVNESIALLTKQFSKVVKRMDGENFK 241

Query: 61  RLDPRGNYVDPYVKNVGSSGGNKFKHFHAKCPNYLRKQGQWYFVMLSDEETHSCIDSDDE 120
           R D  G     +       GG  F H+ A+CP +LRKQ + +   LSDEET    + D  
Sbjct: 242 RRDGEGRTFKCW-----ECGG--FGHYQAECPTFLRKQKKNFRATLSDEETDDSEEDDGF 301

Query: 121 VHALIDKLVIHDT 130
            +A I  +   D+
Sbjct: 302 TNAFIINITKTDS 306

BLAST of CSPI03G05510 vs. NCBI nr
Match: TYK00987.1 (gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 3.1e-07
Identity = 46/133 (34.59%), Postives = 70/133 (52.63%), Query Frame = 0

Query: 1   MFCDERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWD----K 60
           M    R +KK KG+AF+  + +++    K++S  N+ ESI+LL K+F + +KR D    K
Sbjct: 132 MVISNREDKKGKGIAFK-STYEEESTDNKSSSEVNVNESIALLTKQFSKVVKRMDGENFK 191

Query: 61  RLDPRGNYVDPYVKNVGSSGGNKFKHFHAKCPNYLRKQGQWYFVMLSDEETHSCIDSDDE 120
           R D  G     +       GG  F H+ A+CP +LRKQ + +   LSDEET    + D  
Sbjct: 192 RRDGEGRTFKCW-----ECGG--FGHYQAECPTFLRKQKKNFRATLSDEETDDSEEDDGF 251

Query: 121 VHALIDKLVIHDT 130
            +A I  +   D+
Sbjct: 252 TNAFIINITKTDS 256

BLAST of CSPI03G05510 vs. NCBI nr
Match: TYK01287.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 56.2 bits (134), Expect = 2.4e-04
Identity = 43/144 (29.86%), Postives = 66/144 (45.83%), Query Frame = 0

Query: 1   MFCDERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWDKRLDP 60
           M    R +KK KG+AF++   ++    K TN   N+ ESI+LL   F +  K   + ++ 
Sbjct: 164 MTISNRDDKKGKGVAFKIVYEEETPEHKTTNEV-NVNESIALLTNFFSKVKK--FRNMNT 223

Query: 61  RGNYV---------DPYVKNVGSSGGNKFK------HFHAKCPNYLRKQGQWYFVMLSDE 120
            G  V         D   K        K++      H+ AKCP YLRKQ + +     DE
Sbjct: 224 IGARVREQNSFRRRDENFKRKPEERTFKYRERGGIGHYQAKCPTYLRKQKKSFCATFFDE 283

Query: 121 ETHSCIDSDDEVHALIDKLVIHDT 130
           E+    + D+  +A I +L  HD+
Sbjct: 284 ESDDSEEEDEYTNAFISRLTEHDS 304

BLAST of CSPI03G05510 vs. NCBI nr
Match: TYJ95661.1 (gag-proteinase polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 3.2e-04
Identity = 40/127 (31.50%), Postives = 65/127 (51.18%), Query Frame = 0

Query: 5   ERVEKKSKGLAFQVFSSKDQVMKKKTNSYENLAESISLLAKKFGRALKRWDKRLDPRGNY 64
           +R  KK KG+AF+     ++ +   +++  N+ ESI+LL ++F  A ++  K ++     
Sbjct: 226 DRESKKGKGIAFKSTHVDEEAV---SDTEANMDESIALLTEQFTNAFQKL-KNMNATNRR 285

Query: 65  VDPYVK------------NVGSSGGNKFKHFHAKCPNYLRKQGQWYFVMLSDEETHSCID 120
            D Y+K              GS G     H+ A+CP +LRKQ   + V LSDEE+    D
Sbjct: 286 SDGYIKKKEGDRRIFRCRECGSIG-----HYQAECPTFLRKQKN-FCVTLSDEESGDSRD 342

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L3273.0e-6998.46Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G088950 PE=4 SV=1[more]
A0A5A7TGP51.5e-0734.59Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold943G... [more]
A0A5D3BNW51.5e-0734.59Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold602G... [more]
A0A5D3BPP21.2e-0429.86Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
A0A5A7SWB71.5e-0431.50Gag-proteinase polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaff... [more]
Match NameE-valueIdentityDescription
KGN56173.16.2e-6998.46hypothetical protein Csa_010893 [Cucumis sativus][more]
KAA0042403.13.1e-0734.59gag-pol polyprotein [Cucumis melo var. makuwa][more]
TYK00987.13.1e-0734.59gag-pol polyprotein [Cucumis melo var. makuwa][more]
TYK01287.12.4e-0429.86gag-proteinase polyprotein [Cucumis melo var. makuwa][more]
TYJ95661.13.2e-0431.50gag-proteinase polyprotein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G05510.1CSPI03G05510.1mRNA