CSPI03G05290 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G05290
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Xanthine/uracil permease family protein
Location	Chr3: 4299891 .. 4301038 (+)
RNA-Seq Expression	CSPI03G05290
Synteny	CSPI03G05290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAACTCAGCCACCTCCAGAATCTGCAGCCACCGCGAGGAGGATACGTGCGAACCGATGTTTCACGAGGACCGTAGTTGGAGTACTTCTTCCTCCATGGACGATCTTCTCATGTTCGATGTTCGTACTACAACTCATTCTTCTTCTTATGAGTCTTTTCAAACCAGTCTTTGTTGTTCCTCCGCCGTGGACGGTGGAGCTCAGCCTTCTGCTTCCTCCTTCCGACTGAAACGGAGGAAGATGGCGGCCGATGATGATCTCGAAGATACTGCCACTTCTCCTCCTCATCCTTCCATTGTTTCCAAGGTACTTTCTTTTAGCAAATTAATATCACATTTGTGAATAATTTCAGAAGTAATTTAAATTTCTTTTTCACGAACATATTTTCTTTCGTTGTTATCACAAATAATTGAAAATTATTTAGGTAAAATTTGAAAATCAGTAGCATTTTTCAAAACTAATTATTTTTTGCTTTTAGCTTCGAGAGAATTCAAATGTTTTCTTCAAAAAAGATATGGAAACAACGGTATGAAAGGGTGAGATAACAAAAATAGTTTTTTTAATAACTATTTCATTTTTTTTTTAAAAAAAAACTAAATTTATTTTAAGTAAAAAAAAAGTTCACTTCTTACCCAAATTTCAAAACAAAGTAAGCTTTTTTAGTTTTCAAATTTGAAGTACTTTTTCAAGCTTGTCTGATCACATCAACCCCTGTAATGATTTCCTTTCCATTAGGAAAACAAGAAAGTAGTTTTTATATACATATATTAACTTGGTTAATTAATTTGGCCTTCTAATCAGATGGATGAGCGTAGTTCTAAGCAACAGAAGAAGCAAAGGGCAACGATGAATCAAACAAAGCACAAGGTTTCTAATTTTTACCTTAAAAAATATGTTGAGTTCGTTTTGATATTATAATAACATTATTATTTGAGATGCAATATATATAATCTAACTGTGATTTTTGGGGCTATGCTTTATTTTTGTAGGGAAACGGAAGTGAAGACTATGGGGAGGTTGAAGATAGAATAACTGAAGTGGGTTTTGTGGGGAGGGATAACAATAAGAATCATTGTAGCACAGGACTTAAGAACATTGGGCTTTGTTTAGTTCCTGTATCCATGGCTCTCAATTATTTTGCTTAG

mRNA sequence

ATGGAAAACTCAGCCACCTCCAGAATCTGCAGCCACCGCGAGGAGGATACGTGCGAACCGATGTTTCACGAGGACCGTAGTTGGAGTACTTCTTCCTCCATGGACGATCTTCTCATGTTCGATGTTCGTACTACAACTCATTCTTCTTCTTATGAGTCTTTTCAAACCAGTCTTTGTTGTTCCTCCGCCGTGGACGGTGGAGCTCAGCCTTCTGCTTCCTCCTTCCGACTGAAACGGAGGAAGATGGCGGCCGATGATGATCTCGAAGATACTGCCACTTCTCCTCCTCATCCTTCCATTGTTTCCAAGATGGATGAGCGTAGTTCTAAGCAACAGAAGAAGCAAAGGGCAACGATGAATCAAACAAAGCACAAGGGAAACGGAAGTGAAGACTATGGGGAGGTTGAAGATAGAATAACTGAAGTGGGTTTTGTGGGGAGGGATAACAATAAGAATCATTGTAGCACAGGACTTAAGAACATTGGGCTTTGTTTAGTTCCTGTATCCATGGCTCTCAATTATTTTGCTTAG

Coding sequence (CDS)

ATGGAAAACTCAGCCACCTCCAGAATCTGCAGCCACCGCGAGGAGGATACGTGCGAACCGATGTTTCACGAGGACCGTAGTTGGAGTACTTCTTCCTCCATGGACGATCTTCTCATGTTCGATGTTCGTACTACAACTCATTCTTCTTCTTATGAGTCTTTTCAAACCAGTCTTTGTTGTTCCTCCGCCGTGGACGGTGGAGCTCAGCCTTCTGCTTCCTCCTTCCGACTGAAACGGAGGAAGATGGCGGCCGATGATGATCTCGAAGATACTGCCACTTCTCCTCCTCATCCTTCCATTGTTTCCAAGATGGATGAGCGTAGTTCTAAGCAACAGAAGAAGCAAAGGGCAACGATGAATCAAACAAAGCACAAGGGAAACGGAAGTGAAGACTATGGGGAGGTTGAAGATAGAATAACTGAAGTGGGTTTTGTGGGGAGGGATAACAATAAGAATCATTGTAGCACAGGACTTAAGAACATTGGGCTTTGTTTAGTTCCTGTATCCATGGCTCTCAATTATTTTGCTTAG

Protein sequence

MENSATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRTTTHSSSYESFQTSLCCSSAVDGGAQPSASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDERSSKQQKKQRATMNQTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYFA*

Homology

[Close]

BLAST of CSPI03G05290 vs. ExPASy TrEMBL
Match: A0A0A0L2F7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G078270 PE=4 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 3.4e-92
Identity = 175/176 (99.43%), Postives = 175/176 (99.43%), Query Frame = 0


Query: 1   MENSATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRTTTHSSSYESFQTSLCC 60
           MENSATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRTTTHSSSYESFQTSLCC
Sbjct: 1   MENSATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRTTTHSSSYESFQTSLCC 60

Query: 61  SSAVDGGAQPSASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDERSSKQQKKQRATMN 120
           SSAVDGGAQPSASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDERSSKQQKKQRA MN
Sbjct: 61  SSAVDGGAQPSASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDERSSKQQKKQRAMMN 120

Query: 121 QTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYFA 177
           QTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYFA
Sbjct: 121 QTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYFA 176

[Close]

BLAST of CSPI03G05290 vs. ExPASy TrEMBL
Match: A0A5D3BKS2 (Putative CTD small phosphatase-like protein 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00160 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 1.8e-80
Identity = 158/176 (89.77%), Postives = 162/176 (92.05%), Query Frame = 0


Query: 1   MENSATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRTTTHSSSYESFQTSLCC 60
           MENSA SRICSH EED CE  FHED SWSTSSSMDDLLMFDVR+T HSSSYE FQT LCC
Sbjct: 1   MENSANSRICSHGEEDRCEATFHEDPSWSTSSSMDDLLMFDVRSTIHSSSYEFFQTRLCC 60

Query: 61  SSAVDGGAQPSASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDERSSKQQKKQRATMN 120
           SSAVDGGAQ SASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDE SSKQQKKQRAT+N
Sbjct: 61  SSAVDGGAQASASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDEPSSKQQKKQRATIN 120

Query: 121 QTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYFA 177
           QTKHKG GSEDYGEVEDRI +VG VGRDNNKN+CSTGLKNIGLCLVPVSMALNYFA
Sbjct: 121 QTKHKGKGSEDYGEVEDRIIQVGVVGRDNNKNYCSTGLKNIGLCLVPVSMALNYFA 176

[Close]

BLAST of CSPI03G05290 vs. ExPASy TrEMBL
Match: A0A1S3CKU1 (uncharacterized protein LOC103501601 OS=Cucumis melo OX=3656 GN=LOC103501601 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 1.8e-80
Identity = 158/176 (89.77%), Postives = 162/176 (92.05%), Query Frame = 0


Query: 1   MENSATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRTTTHSSSYESFQTSLCC 60
           MENSA SRICSH EED CE  FHED SWSTSSSMDDLLMFDVR+T HSSSYE FQT LCC
Sbjct: 1   MENSANSRICSHGEEDRCEATFHEDPSWSTSSSMDDLLMFDVRSTIHSSSYEFFQTRLCC 60

Query: 61  SSAVDGGAQPSASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDERSSKQQKKQRATMN 120
           SSAVDGGAQ SASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDE SSKQQKKQRAT+N
Sbjct: 61  SSAVDGGAQASASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDEPSSKQQKKQRATIN 120

Query: 121 QTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYFA 177
           QTKHKG GSEDYGEVEDRI +VG VGRDNNKN+CSTGLKNIGLCLVPVSMALNYFA
Sbjct: 121 QTKHKGKGSEDYGEVEDRIIQVGVVGRDNNKNYCSTGLKNIGLCLVPVSMALNYFA 176

[Close]

BLAST of CSPI03G05290 vs. ExPASy TrEMBL
Match: A0A5A7TU96 (Xanthine/uracil permease family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold83G00030 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 6.0e-36
Identity = 84/99 (84.85%), Postives = 87/99 (87.88%), Query Frame = 0


Query: 5   ATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRTTTHSSSYESFQTSLCCSSAV 64
           A  +IC  R ED CE  FHED SWSTSSSMDDLLMFDVR+T HSSSYE FQT LCCSSAV
Sbjct: 71  ACGQICC-RREDRCEATFHEDPSWSTSSSMDDLLMFDVRSTIHSSSYEFFQTRLCCSSAV 130

Query: 65  DGGAQPSASSFRLKRRKMAADDDLEDTATSPPHPSIVSK 104
           DGGAQPSASSFRLK+RKMAADDDLEDTATSPPHPSIVSK
Sbjct: 131 DGGAQPSASSFRLKQRKMAADDDLEDTATSPPHPSIVSK 168

[Close]

BLAST of CSPI03G05290 vs. ExPASy TrEMBL
Match: A0A5A7V6T3 (Xan_ur_permease domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold749G00650 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.7e-35
Identity = 81/90 (90.00%), Postives = 83/90 (92.22%), Query Frame = 0


Query: 14  EEDTCEPMFHEDRSWSTSSSMDDLLMFDVRTTTHSSSYESFQTSLCCSSAVDGGAQPSAS 73
           EED CE  FHED SWSTSSSMDDLLMFDVR+T HSSSYE FQT LCCSSAVDGGAQPSAS
Sbjct: 115 EEDRCEATFHEDPSWSTSSSMDDLLMFDVRSTIHSSSYEFFQTRLCCSSAVDGGAQPSAS 174

Query: 74  SFRLKRRKMAADDDLEDTATSPPHPSIVSK 104
           SFRLK+RKMAADDDLEDTATSPPHPSIVSK
Sbjct: 175 SFRLKQRKMAADDDLEDTATSPPHPSIVSK 204

[Close]

BLAST of CSPI03G05290 vs. NCBI nr
Match: XP_011652737.2 (uncharacterized protein LOC105435073 [Cucumis sativus] >KGN56145.1 hypothetical protein Csa_009500 [Cucumis sativus])

HSP 1 Score: 347.4 bits (890), Expect = 7.1e-92
Identity = 175/176 (99.43%), Postives = 175/176 (99.43%), Query Frame = 0


Query: 1   MENSATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRTTTHSSSYESFQTSLCC 60
           MENSATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRTTTHSSSYESFQTSLCC
Sbjct: 1   MENSATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRTTTHSSSYESFQTSLCC 60

Query: 61  SSAVDGGAQPSASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDERSSKQQKKQRATMN 120
           SSAVDGGAQPSASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDERSSKQQKKQRA MN
Sbjct: 61  SSAVDGGAQPSASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDERSSKQQKKQRAMMN 120

Query: 121 QTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYFA 177
           QTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYFA
Sbjct: 121 QTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYFA 176

[Close]

BLAST of CSPI03G05290 vs. NCBI nr
Match: XP_008463437.1 (PREDICTED: uncharacterized protein LOC103501601 [Cucumis melo] >TYK00353.1 putative CTD small phosphatase-like protein 2 [Cucumis melo var. makuwa])

HSP 1 Score: 308.5 bits (789), Expect = 3.7e-80
Identity = 158/176 (89.77%), Postives = 162/176 (92.05%), Query Frame = 0


Query: 1   MENSATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRTTTHSSSYESFQTSLCC 60
           MENSA SRICSH EED CE  FHED SWSTSSSMDDLLMFDVR+T HSSSYE FQT LCC
Sbjct: 1   MENSANSRICSHGEEDRCEATFHEDPSWSTSSSMDDLLMFDVRSTIHSSSYEFFQTRLCC 60

Query: 61  SSAVDGGAQPSASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDERSSKQQKKQRATMN 120
           SSAVDGGAQ SASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDE SSKQQKKQRAT+N
Sbjct: 61  SSAVDGGAQASASSFRLKRRKMAADDDLEDTATSPPHPSIVSKMDEPSSKQQKKQRATIN 120

Query: 121 QTKHKGNGSEDYGEVEDRITEVGFVGRDNNKNHCSTGLKNIGLCLVPVSMALNYFA 177
           QTKHKG GSEDYGEVEDRI +VG VGRDNNKN+CSTGLKNIGLCLVPVSMALNYFA
Sbjct: 121 QTKHKGKGSEDYGEVEDRIIQVGVVGRDNNKNYCSTGLKNIGLCLVPVSMALNYFA 176

[Close]

BLAST of CSPI03G05290 vs. NCBI nr
Match: KAA0047143.1 (Xanthine/uracil permease family protein [Cucumis melo var. makuwa])

HSP 1 Score: 160.6 bits (405), Expect = 1.2e-35
Identity = 84/99 (84.85%), Postives = 87/99 (87.88%), Query Frame = 0


Query: 5   ATSRICSHREEDTCEPMFHEDRSWSTSSSMDDLLMFDVRTTTHSSSYESFQTSLCCSSAV 64
           A  +IC  R ED CE  FHED SWSTSSSMDDLLMFDVR+T HSSSYE FQT LCCSSAV
Sbjct: 71  ACGQICC-RREDRCEATFHEDPSWSTSSSMDDLLMFDVRSTIHSSSYEFFQTRLCCSSAV 130

Query: 65  DGGAQPSASSFRLKRRKMAADDDLEDTATSPPHPSIVSK 104
           DGGAQPSASSFRLK+RKMAADDDLEDTATSPPHPSIVSK
Sbjct: 131 DGGAQPSASSFRLKQRKMAADDDLEDTATSPPHPSIVSK 168

[Close]

BLAST of CSPI03G05290 vs. NCBI nr
Match: TYK14734.1 (putative nucleobase-ascorbate transporter 10 [Cucumis melo var. makuwa])

HSP 1 Score: 159.1 bits (401), Expect = 3.6e-35
Identity = 81/90 (90.00%), Postives = 83/90 (92.22%), Query Frame = 0


Query: 14  EEDTCEPMFHEDRSWSTSSSMDDLLMFDVRTTTHSSSYESFQTSLCCSSAVDGGAQPSAS 73
           EED CE  FHED SWSTSSSMDDLLMFDVR+T HSSSYE FQT LCCSSAVDGGAQPSAS
Sbjct: 115 EEDRCEATFHEDPSWSTSSSMDDLLMFDVRSTIHSSSYEFFQTRLCCSSAVDGGAQPSAS 174

Query: 74  SFRLKRRKMAADDDLEDTATSPPHPSIVSK 104
           SFRLK+RKMAADDDLEDTATSPPHPSIVSK
Sbjct: 175 SFRLKQRKMAADDDLEDTATSPPHPSIVSK 204

[Close]

BLAST of CSPI03G05290 vs. NCBI nr
Match: KAA0061379.1 (Xan_ur_permease domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 159.1 bits (401), Expect = 3.6e-35
Identity = 81/90 (90.00%), Postives = 83/90 (92.22%), Query Frame = 0


Query: 14  EEDTCEPMFHEDRSWSTSSSMDDLLMFDVRTTTHSSSYESFQTSLCCSSAVDGGAQPSAS 73
           EED CE  FHED SWSTSSSMDDLLMFDVR+T HSSSYE FQT LCCSSAVDGGAQPSAS
Sbjct: 115 EEDRCEATFHEDPSWSTSSSMDDLLMFDVRSTIHSSSYEFFQTRLCCSSAVDGGAQPSAS 174

Query: 74  SFRLKRRKMAADDDLEDTATSPPHPSIVSK 104
           SFRLK+RKMAADDDLEDTATSPPHPSIVSK
Sbjct: 175 SFRLKQRKMAADDDLEDTATSPPHPSIVSK 204

The following BLAST results are available for this feature:

BLAST of CSPI03G05290 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G05290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2F7	3.4e-92	99.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G078270 PE=4 SV=1	[more]
A0A5D3BKS2	1.8e-80	89.77	Putative CTD small phosphatase-like protein 2 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3CKU1	1.8e-80	89.77	uncharacterized protein LOC103501601 OS=Cucumis melo OX=3656 GN=LOC103501601 PE=...	[more]
A0A5A7TU96	6.0e-36	84.85	Xanthine/uracil permease family protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A5A7V6T3	1.7e-35	90.00	Xan_ur_permease domain-containing protein OS=Cucumis melo var. makuwa OX=1194695...	[more]

BLAST of CSPI03G05290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652737.2	7.1e-92	99.43	uncharacterized protein LOC105435073 [Cucumis sativus] >KGN56145.1 hypothetical ...	[more]
XP_008463437.1	3.7e-80	89.77	PREDICTED: uncharacterized protein LOC103501601 [Cucumis melo] >TYK00353.1 putat...	[more]
KAA0047143.1	1.2e-35	84.85	Xanthine/uracil permease family protein [Cucumis melo var. makuwa]	[more]
TYK14734.1	3.6e-35	90.00	putative nucleobase-ascorbate transporter 10 [Cucumis melo var. makuwa]	[more]
KAA0061379.1	3.6e-35	90.00	Xan_ur_permease domain-containing protein [Cucumis melo var. makuwa]	[more]

BLAST of CSPI03G05290 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..92
None	No IPR available	PANTHER	PTHR33974:SF2	VASCULAR-RELATED UNKNOWN PROTEIN 1-RELATED	coord: 7..175
IPR039280	VASCULAR-RELATED UNKNOWN PROTEIN	PANTHER	PTHR33974	VASCULAR-RELATED UNKNOWN PROTEIN 1-RELATED	coord: 7..175

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G05290.1	CSPI03G05290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006865	amino acid transport
biological_process	GO:0009734	auxin-activated signaling pathway
biological_process	GO:0006269	DNA replication, synthesis of RNA primer
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0010089	xylem development
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003896	DNA primase activity
molecular_function	GO:0015293	symporter activity