CSPI03G05050 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G05050
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	DUF4228 domain protein
Location	Chr3: 4095314 .. 4095730 (+)
RNA-Seq Expression	CSPI03G05050
Synteny	CSPI03G05050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCTCTCTTTCTATCTCAAAAGATAACCTCATCACCATGGGAAATTGTACAAGCAACAAATATTTGGCAGAGACAATAGTGCCGATGAGCGATGACGACGAAGAAATGGAGGAGATGCTGAGAAGGAGGCTAGTTGTCAAAAACGGAGCTCAGAAATGTTCAGCGAGTACCACGACGGAGTTGAAGATTAGGATCACAAAGAGAGAGCTGGAGAAGTTGTTGTGCAAAGTGGATGTGGAGGAGTTGCCAGTGACGGAGCTGTTATCCAAGTTAATCGATGTTGGCGATACATTCGAGAGTACCCATCAGCGATCATGGCGGCCTTCTTTGCAAAGTATTCCTGAGGTGAACTGAACAACATATATGTTAAATATTGTAATTATTGGATGTAGACAGGGGGAGTATTTTGAACCTAC

mRNA sequence

TTTCTCTCTTTCTATCTCAAAAGATAACCTCATCACCATGGGAAATTGTACAAGCAACAAATATTTGGCAGAGACAATAGTGCCGATGAGCGATGACGACGAAGAAATGGAGGAGATGCTGAGAAGGAGGCTAGTTGTCAAAAACGGAGCTCAGAAATGTTCAGCGAGTACCACGACGGAGTTGAAGATTAGGATCACAAAGAGAGAGCTGGAGAAGTTGTTGTGCAAAGTGGATGTGGAGGAGTTGCCAGTGACGGAGCTGTTATCCAAGTTAATCGATGTTGGCGATACATTCGAGAGTACCCATCAGCGATCATGGCGGCCTTCTTTGCAAAGTATTCCTGAGGTGAACTGAACAACATATATGTTAAATATTGTAATTATTGGATGTAGACAGGGGGAGTATTTTGAACCTAC

Coding sequence (CDS)

ATGGGAAATTGTACAAGCAACAAATATTTGGCAGAGACAATAGTGCCGATGAGCGATGACGACGAAGAAATGGAGGAGATGCTGAGAAGGAGGCTAGTTGTCAAAAACGGAGCTCAGAAATGTTCAGCGAGTACCACGACGGAGTTGAAGATTAGGATCACAAAGAGAGAGCTGGAGAAGTTGTTGTGCAAAGTGGATGTGGAGGAGTTGCCAGTGACGGAGCTGTTATCCAAGTTAATCGATGTTGGCGATACATTCGAGAGTACCCATCAGCGATCATGGCGGCCTTCTTTGCAAAGTATTCCTGAGGTGAACTGA

Protein sequence

MGNCTSNKYLAETIVPMSDDDEEMEEMLRRRLVVKNGAQKCSASTTTELKIRITKRELEKLLCKVDVEELPVTELLSKLIDVGDTFESTHQRSWRPSLQSIPEVN*

Homology

[Close]

BLAST of CSPI03G05050 vs. ExPASy TrEMBL
Match: A0A0A0L2D8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G076560 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 4.3e-50
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MGNCTSNKYLAETIVPMSDDDEEMEEMLRRRLVVKNGAQKCSASTTTELKIRITKRELEK 60
           MGNCTSNKYLAETIVPMSDDDEE+EEMLRRRLVVKNGAQKCSASTTTELKIRITKRELEK
Sbjct: 1   MGNCTSNKYLAETIVPMSDDDEEVEEMLRRRLVVKNGAQKCSASTTTELKIRITKRELEK 60

Query: 61  LLCKVDVEELPVTELLSKLIDVGDTFESTHQRSWRPSLQSIPEVN 106
           LLCKVDVEELPVTELLSKLIDVGDTFESTHQRSWRPSLQSIPEVN
Sbjct: 61  LLCKVDVEELPVTELLSKLIDVGDTFESTHQRSWRPSLQSIPEVN 105

[Close]

BLAST of CSPI03G05050 vs. ExPASy TrEMBL
Match: A0A5D3BTQ9 (DUF4228 domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold925G00050 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.1e-42
Identity = 92/105 (87.62%), Postives = 101/105 (96.19%), Query Frame = 0


Query: 1   MGNCTSNKYLAETIVPMSDDDEEMEEMLRRRLVVKNGAQKCSASTTTELKIRITKRELEK 60
           MGNCTSNKYLAET +PMSDD+EE+EEMLRRRLVV++ AQKCSASTTTELKIRITK+ELEK
Sbjct: 1   MGNCTSNKYLAET-MPMSDDEEEVEEMLRRRLVVESRAQKCSASTTTELKIRITKKELEK 60

Query: 61  LLCKVDVEELPVTELLSKLIDVGDTFESTHQRSWRPSLQSIPEVN 106
           LLCKVD+EELPV ELLSKLIDVGD FESTH+RSW+PSLQSIPEVN
Sbjct: 61  LLCKVDMEELPVAELLSKLIDVGDAFESTHRRSWQPSLQSIPEVN 104

[Close]

BLAST of CSPI03G05050 vs. ExPASy TrEMBL
Match: A0A1S3CJ77 (uncharacterized protein LOC103501580 OS=Cucumis melo OX=3656 GN=LOC103501580 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.1e-42
Identity = 92/105 (87.62%), Postives = 101/105 (96.19%), Query Frame = 0


Query: 1   MGNCTSNKYLAETIVPMSDDDEEMEEMLRRRLVVKNGAQKCSASTTTELKIRITKRELEK 60
           MGNCTSNKYLAET +PMSDD+EE+EEMLRRRLVV++ AQKCSASTTTELKIRITK+ELEK
Sbjct: 1   MGNCTSNKYLAET-MPMSDDEEEVEEMLRRRLVVESRAQKCSASTTTELKIRITKKELEK 60

Query: 61  LLCKVDVEELPVTELLSKLIDVGDTFESTHQRSWRPSLQSIPEVN 106
           LLCKVD+EELPV ELLSKLIDVGD FESTH+RSW+PSLQSIPEVN
Sbjct: 61  LLCKVDMEELPVAELLSKLIDVGDAFESTHRRSWQPSLQSIPEVN 104

[Close]

BLAST of CSPI03G05050 vs. ExPASy TrEMBL
Match: A0A5A7SX05 (DUF4228 domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00540 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.0e-35
Identity = 79/91 (86.81%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 15  VPMSDDDEEMEEMLRRRLVVKNGAQKCSASTTTELKIRITKRELEKLLCKVDVEELPVTE 74
           +PMSDD+EE+EEMLRRRLVV++ AQKCSASTTTELKIRITK+ELEKLLCKVD+EELPV E
Sbjct: 1   MPMSDDEEEVEEMLRRRLVVESRAQKCSASTTTELKIRITKKELEKLLCKVDMEELPVAE 60

Query: 75  LLSKLIDVGDTFESTHQRSWRPSLQSIPEVN 106
           LLSKLIDVGD FESTH+RSW+PSLQSIPEVN
Sbjct: 61  LLSKLIDVGDAFESTHRRSWQPSLQSIPEVN 91

[Close]

BLAST of CSPI03G05050 vs. ExPASy TrEMBL
Match: A0A6J1J7P7 (uncharacterized protein LOC111483315 OS=Cucurbita maxima OX=3661 GN=LOC111483315 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 9.4e-29
Identity = 74/107 (69.16%), Postives = 90/107 (84.11%), Query Frame = 0


Query: 1   MGNCTSNKYLAETIVPMSDDDEEMEEMLRRRLVVKNGAQKCS---ASTTTELKIRITKRE 60
           MGNCTSNKYLAET +PMS ++EE+ E L+R+L   +GA + S    +TTTE+KIR+TKRE
Sbjct: 1   MGNCTSNKYLAET-MPMS-EEEELVETLKRKLNADDGASRSSRGTTTTTTEVKIRMTKRE 60

Query: 61  LEKLLCKVDVEELPVTELLSKLIDVGDTFESTHQRSWRPSLQSIPEV 105
           LEKLL KV+VEELPVTELL +LI+VGD  ESTH+RSWRPSLQSIPE+
Sbjct: 61  LEKLLSKVEVEELPVTELLLQLIEVGDESESTHRRSWRPSLQSIPEL 105

[Close]

BLAST of CSPI03G05050 vs. NCBI nr
Match: XP_031739098.1 (uncharacterized protein LOC116402843 [Cucumis sativus])

HSP 1 Score: 206.8 bits (525), Expect = 9.0e-50
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 0


Query: 1   MGNCTSNKYLAETIVPMSDDDEEMEEMLRRRLVVKNGAQKCSASTTTELKIRITKRELEK 60
           MGNCTSNKYLAETIVPMSDDDEE+EEMLRRRLVVKNGAQKCSASTTTELKIRITKRELEK
Sbjct: 1   MGNCTSNKYLAETIVPMSDDDEEVEEMLRRRLVVKNGAQKCSASTTTELKIRITKRELEK 60

Query: 61  LLCKVDVEELPVTELLSKLIDVGDTFESTHQRSWRPSLQSIPEVN 106
           LLCKVDVEELPVTELLSKLIDVGDTFESTHQRSWRPSLQSIPEVN
Sbjct: 61  LLCKVDVEELPVTELLSKLIDVGDTFESTHQRSWRPSLQSIPEVN 105

[Close]

BLAST of CSPI03G05050 vs. NCBI nr
Match: KAE8650133.1 (hypothetical protein Csa_011778 [Cucumis sativus])

HSP 1 Score: 194.9 bits (494), Expect = 3.5e-46
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 0


Query: 1   MGNCTSNKYLAETIVPMSDDDEEMEEMLRRRLVVKNGAQKCSASTTTELKIRITKRELEK 60
           MGNCTSNKYLAETIVPMSDDDEE+EEMLRRRLVVKNGAQKCSASTTTELKIRITKRELEK
Sbjct: 1   MGNCTSNKYLAETIVPMSDDDEEVEEMLRRRLVVKNGAQKCSASTTTELKIRITKRELEK 60

Query: 61  LLCKVDVEELPVTELLSKLIDVGDTFESTHQRSWRPSLQ 100
           LLCKVDVEELPVTELLSKLIDVGDTFESTHQRSWRPSLQ
Sbjct: 61  LLCKVDVEELPVTELLSKLIDVGDTFESTHQRSWRPSLQ 99

[Close]

BLAST of CSPI03G05050 vs. NCBI nr
Match: XP_008463409.1 (PREDICTED: uncharacterized protein LOC103501580 [Cucumis melo] >TYK02554.1 DUF4228 domain protein [Cucumis melo var. makuwa])

HSP 1 Score: 182.2 bits (461), Expect = 2.4e-42
Identity = 92/105 (87.62%), Postives = 101/105 (96.19%), Query Frame = 0


Query: 1   MGNCTSNKYLAETIVPMSDDDEEMEEMLRRRLVVKNGAQKCSASTTTELKIRITKRELEK 60
           MGNCTSNKYLAET +PMSDD+EE+EEMLRRRLVV++ AQKCSASTTTELKIRITK+ELEK
Sbjct: 1   MGNCTSNKYLAET-MPMSDDEEEVEEMLRRRLVVESRAQKCSASTTTELKIRITKKELEK 60

Query: 61  LLCKVDVEELPVTELLSKLIDVGDTFESTHQRSWRPSLQSIPEVN 106
           LLCKVD+EELPV ELLSKLIDVGD FESTH+RSW+PSLQSIPEVN
Sbjct: 61  LLCKVDMEELPVAELLSKLIDVGDAFESTHRRSWQPSLQSIPEVN 104

[Close]

BLAST of CSPI03G05050 vs. NCBI nr
Match: XP_038904231.1 (uncharacterized protein LOC120090574 [Benincasa hispida])

HSP 1 Score: 176.8 bits (447), Expect = 9.9e-41
Identity = 91/105 (86.67%), Postives = 98/105 (93.33%), Query Frame = 0


Query: 1   MGNCTSNKYLAETIVPMSDDDEEMEEMLRRRLVVKNGAQKCSASTTTELKIRITKRELEK 60
           MGNCTSNKYLAET +PMSD+DEE  E +RRRLVV +GA+KCSA+TTTELKIRITKRELEK
Sbjct: 1   MGNCTSNKYLAET-MPMSDEDEEAVETVRRRLVVHDGARKCSANTTTELKIRITKRELEK 60

Query: 61  LLCKVDVEELPVTELLSKLIDVGDTFESTHQRSWRPSLQSIPEVN 106
           LL KVDVEELPVTELLS+LIDVGD FESTHQRSWRPSLQSIPEVN
Sbjct: 61  LLSKVDVEELPVTELLSQLIDVGDAFESTHQRSWRPSLQSIPEVN 104

[Close]

BLAST of CSPI03G05050 vs. NCBI nr
Match: KAA0033991.1 (DUF4228 domain protein [Cucumis melo var. makuwa])

HSP 1 Score: 159.1 bits (401), Expect = 2.1e-35
Identity = 79/91 (86.81%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 15  VPMSDDDEEMEEMLRRRLVVKNGAQKCSASTTTELKIRITKRELEKLLCKVDVEELPVTE 74
           +PMSDD+EE+EEMLRRRLVV++ AQKCSASTTTELKIRITK+ELEKLLCKVD+EELPV E
Sbjct: 1   MPMSDDEEEVEEMLRRRLVVESRAQKCSASTTTELKIRITKKELEKLLCKVDMEELPVAE 60

Query: 75  LLSKLIDVGDTFESTHQRSWRPSLQSIPEVN 106
           LLSKLIDVGD FESTH+RSW+PSLQSIPEVN
Sbjct: 61  LLSKLIDVGDAFESTHRRSWQPSLQSIPEVN 91

[Close]

BLAST of CSPI03G05050 vs. TAIR 10
Match: AT4G21920.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G20340.1); Has 40 Blast hits to 40 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 56.2 bits (134), Expect = 1.8e-08
Identity = 36/94 (38.30%), Postives = 55/94 (58.51%), Query Frame = 0


Query: 19  DDDEEMEEMLRRRLVVKNGAQKCSASTTTELKIRITKRELEKLLCKVDVEELPVTELLSK 78
           DD+++ E++L     V       S+S   E+KIRITK+ELE L+  + ++ L   E+LSK
Sbjct: 37  DDNDDGEKLLGETSNV-TSTSSSSSSERREIKIRITKKELEDLMRNIGLKSLTAEEILSK 96

Query: 79  LI-DVGDTF------ESTHQRSWRPSLQSIPEVN 106
           LI + GD         + H + W+P LQSIPE++
Sbjct: 97  LIFEGGDQIGFSAVDVTNHHQPWKPVLQSIPEMD 129

[Close]

BLAST of CSPI03G05050 vs. TAIR 10
Match: AT3G20340.1 (Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. )

HSP 1 Score: 49.3 bits (116), Expect = 2.2e-06
Identity = 28/66 (42.42%), Postives = 41/66 (62.12%), Query Frame = 0


Query: 42  SASTTTELKIRITKRELEKLLCKVDVEELPVTE--LLSKLIDVGDTFESTHQRSWRPSLQ 101
           S+  + E+KIR+TK++L  LL KV+V +L   +      +++     E+  QR WRP LQ
Sbjct: 50  SSVPSHEIKIRLTKKQLHDLLSKVNVHDLTFQQQTFSCPILNNRGYEEANQQRLWRPVLQ 109

Query: 102 SIPEVN 106
           SIPEVN
Sbjct: 110 SIPEVN 115

The following BLAST results are available for this feature:

BLAST of CSPI03G05050 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G05050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2D8	4.3e-50	99.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G076560 PE=4 SV=1	[more]
A0A5D3BTQ9	1.1e-42	87.62	DUF4228 domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9...	[more]
A0A1S3CJ77	1.1e-42	87.62	uncharacterized protein LOC103501580 OS=Cucumis melo OX=3656 GN=LOC103501580 PE=...	[more]
A0A5A7SX05	1.0e-35	86.81	DUF4228 domain protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold4...	[more]
A0A6J1J7P7	9.4e-29	69.16	uncharacterized protein LOC111483315 OS=Cucurbita maxima OX=3661 GN=LOC111483315...	[more]

BLAST of CSPI03G05050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031739098.1	9.0e-50	99.05	uncharacterized protein LOC116402843 [Cucumis sativus]	[more]
KAE8650133.1	3.5e-46	98.99	hypothetical protein Csa_011778 [Cucumis sativus]	[more]
XP_008463409.1	2.4e-42	87.62	PREDICTED: uncharacterized protein LOC103501580 [Cucumis melo] >TYK02554.1 DUF42...	[more]
XP_038904231.1	9.9e-41	86.67	uncharacterized protein LOC120090574 [Benincasa hispida]	[more]
KAA0033991.1	2.1e-35	86.81	DUF4228 domain protein [Cucumis melo var. makuwa]	[more]

BLAST of CSPI03G05050 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G21920.1	1.8e-08	38.30	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-termin...	[more]
AT3G20340.1	2.2e-06	42.42	Expression of the gene is downregulated in the presence of paraquat, an inducer ...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33647:SF5	OS01G0793900 PROTEIN	coord: 1..104
None	No IPR available	PANTHER	PTHR33647	OS01G0793900 PROTEIN	coord: 1..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G05050.1	CSPI03G05050.1	mRNA