CSPI03G04650 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G04650
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr3: 3774170 .. 3774889 (-)
RNA-Seq ExpressionCSPI03G04650
SyntenyCSPI03G04650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATATCCAAAACTAATATTGTGTGCCCTTTTACAAGAATATGACTTCCAAAATTGTTTTTCTTGTGCTTCTTGGTGCCCTCGTCTGCTCCACTTTTGAGGCTCGCAAGCTGAGTATTGCCTCTTCCAGCCAAGATGAGAAGTTTGAGGACCATGGCTTGGTTGATGGAGAGTTAAGTGGTCGAGCAAGAGGGTTAGCTGGACAGTTCATTGGAATAGGTTTTAATTCAAGCGTTGCTCTAGGTGTAGGTGTAGGAAGCCCACCTGTGTTATATGTAGGAACCCCACCGATCAATGTAGGCATTGGGGTAAGCGGTGGTTCCGAGAATGGACCTAGTGGTGGTGGTAAGTAGAGAGGTGGTTCGATGGTGCTGTGTTCTGTGCAAAAGGTGCCTTCCCCCTTGAAGAATAATGTTTTTACTACCAAGGAGAAATTAAGTTTCTTTTAAATCCTATCTATATGCTATATAATTTTAGGTATTTGTTTTTGTATGTGTAATGTGTGACTTGTGCTTGTTTCTGTATTTGTGTTTATGTGTGCTGTTTAATTATAATAAAAAAAAATTAAACAAAAAAGTTTCGTATGAAAACCTAGTTGAAATGTCCTAGATGCACCTACCAGCAATCTGTCTTTCTTGTAATAAAAAAATTTCAAATGCGGAAGAAACCACTTTTGGTCCACACCCTTTCCTATGCGTTGTAATTGTAATTTTTCAAGGCAC

mRNA sequence

AATATCCAAAACTAATATTGTGTGCCCTTTTACAAGAATATGACTTCCAAAATTGTTTTTCTTGTGCTTCTTGGTGCCCTCGTCTGCTCCACTTTTGAGGCTCGCAAGCTGAGTATTGCCTCTTCCAGCCAAGATGAGAAGTTTGAGGACCATGGCTTGGTTGATGGAGAGTTAAGTGGTCGAGCAAGAGGGTTAGCTGGACAGTTCATTGGAATAGGTTTTAATTCAAGCGTTGCTCTAGGTGTAGGTGTAGGAAGCCCACCTGTGTTATATGTAGGAACCCCACCGATCAATGTAGGCATTGGGGTAAGCGGTGGTTCCGAGAATGGACCTAGTGGTGGTGGTAAGTAGAGAGGTGGTTCGATGGTGCTGTGTTCTGTGCAAAAGGTGCCTTCCCCCTTGAAGAATAATGTTTTTACTACCAAGGAGAAATTAAGTTTCTTTTAAATCCTATCTATATGCTATATAATTTTAGGTATTTGTTTTTGTATGTGTAATGTGTGACTTGTGCTTGTTTCTGTATTTGTGTTTATGTGTGCTGTTTAATTATAATAAAAAAAAATTAAACAAAAAAGTTTCGTATGAAAACCTAGTTGAAATGTCCTAGATGCACCTACCAGCAATCTGTCTTTCTTGTAATAAAAAAATTTCAAATGCGGAAGAAACCACTTTTGGTCCACACCCTTTCCTATGCGTTGTAATTGTAATTTTTCAAGGCAC

Coding sequence (CDS)

ATGACTTCCAAAATTGTTTTTCTTGTGCTTCTTGGTGCCCTCGTCTGCTCCACTTTTGAGGCTCGCAAGCTGAGTATTGCCTCTTCCAGCCAAGATGAGAAGTTTGAGGACCATGGCTTGGTTGATGGAGAGTTAAGTGGTCGAGCAAGAGGGTTAGCTGGACAGTTCATTGGAATAGGTTTTAATTCAAGCGTTGCTCTAGGTGTAGGTGTAGGAAGCCCACCTGTGTTATATGTAGGAACCCCACCGATCAATGTAGGCATTGGGGTAAGCGGTGGTTCCGAGAATGGACCTAGTGGTGGTGGTAAGTAG

Protein sequence

MTSKIVFLVLLGALVCSTFEARKLSIASSSQDEKFEDHGLVDGELSGRARGLAGQFIGIGFNSSVALGVGVGSPPVLYVGTPPINVGIGVSGGSENGPSGGGK*
Homology
[Close]
BLAST of CSPI03G04650 vs. ExPASy TrEMBL
Match: A0A0A0L669 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G065250 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 6.4e-46
Identity = 101/103 (98.06%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MTSKIVFLVLLGALVCSTFEARKLSIASSSQDEKFEDHGLVDGELSGRARGLAGQFIGIG 60
           MTSKIVFLVLLGALVCSTFEARKLSIASS+QDEKFEDHGLVDGELSGRARGLAGQFIGIG
Sbjct: 1   MTSKIVFLVLLGALVCSTFEARKLSIASSTQDEKFEDHGLVDGELSGRARGLAGQFIGIG 60

Query: 61  FNSSVALGVGVGSPPVLYVGTPPINVGIGVSGGSENGPSGGGK 104
           FNSSV+LGVGVGSPPVLYVGTPPINVGIGVSGGSENGPSGGGK
Sbjct: 61  FNSSVSLGVGVGSPPVLYVGTPPINVGIGVSGGSENGPSGGGK 103

[Close]
BLAST of CSPI03G04650 vs. ExPASy TrEMBL
Match: A0A5A7VBZ1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold943G00010 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 1.3e-22
Identity = 68/107 (63.55%), Postives = 78/107 (72.90%), Query Frame = 0 

Query: 1   MTSKIVFLVLLGALVCSTFEARKLSIASSSQDEKFEDHGLVDGELSGRARGLAGQFIGIG 60
           MTSKIVFLVLLGALVCSTFEARKL++ASS QDEKFEDHGLVDGELSG  R    +     
Sbjct: 1   MTSKIVFLVLLGALVCSTFEARKLNVASSGQDEKFEDHGLVDGELSGGVRESVRK----- 60

Query: 61  FNSSVALGVGVG----SPPVLYVGTPPINVGIGVSGGSENGPSGGGK 104
            +++V +G GV       P+LY+GTP  NVGIG+  GS   PSGGGK
Sbjct: 61  LDANVGVGTGVDLDLLGSPLLYLGTPGTNVGIGLGNGSGGVPSGGGK 102

[Close]
BLAST of CSPI03G04650 vs. NCBI nr
Match: KGN56077.1 (hypothetical protein Csa_011309 [Cucumis sativus])

HSP 1 Score: 193.0 bits (489), Expect = 1.3e-45
Identity = 101/103 (98.06%), Postives = 103/103 (100.00%), Query Frame = 0 

Query: 1   MTSKIVFLVLLGALVCSTFEARKLSIASSSQDEKFEDHGLVDGELSGRARGLAGQFIGIG 60
           MTSKIVFLVLLGALVCSTFEARKLSIASS+QDEKFEDHGLVDGELSGRARGLAGQFIGIG
Sbjct: 1   MTSKIVFLVLLGALVCSTFEARKLSIASSTQDEKFEDHGLVDGELSGRARGLAGQFIGIG 60

Query: 61  FNSSVALGVGVGSPPVLYVGTPPINVGIGVSGGSENGPSGGGK 104
           FNSSV+LGVGVGSPPVLYVGTPPINVGIGVSGGSENGPSGGGK
Sbjct: 61  FNSSVSLGVGVGSPPVLYVGTPPINVGIGVSGGSENGPSGGGK 103

[Close]
BLAST of CSPI03G04650 vs. NCBI nr
Match: KAA0065832.1 (hypothetical protein E6C27_scaffold37G001400 [Cucumis melo var. makuwa] >TYK24041.1 hypothetical protein E5676_scaffold943G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 2.7e-22
Identity = 68/107 (63.55%), Postives = 78/107 (72.90%), Query Frame = 0 

Query: 1   MTSKIVFLVLLGALVCSTFEARKLSIASSSQDEKFEDHGLVDGELSGRARGLAGQFIGIG 60
           MTSKIVFLVLLGALVCSTFEARKL++ASS QDEKFEDHGLVDGELSG  R    +     
Sbjct: 1   MTSKIVFLVLLGALVCSTFEARKLNVASSGQDEKFEDHGLVDGELSGGVRESVRK----- 60

Query: 61  FNSSVALGVGVG----SPPVLYVGTPPINVGIGVSGGSENGPSGGGK 104
            +++V +G GV       P+LY+GTP  NVGIG+  GS   PSGGGK
Sbjct: 61  LDANVGVGTGVDLDLLGSPLLYLGTPGTNVGIGLGNGSGGVPSGGGK 102

The following BLAST results are available for this feature:
BLAST of CSPI03G04650 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI03G04650 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6696.4e-4698.06Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G065250 PE=4 SV=1[more]
A0A5A7VBZ11.3e-2263.55Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of CSPI03G04650 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN56077.11.3e-4598.06hypothetical protein Csa_011309 [Cucumis sativus][more]
KAA0065832.12.7e-2263.55hypothetical protein E6C27_scaffold37G001400 [Cucumis melo var. makuwa] >TYK2404... [more]
BLAST of CSPI03G04650 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G04650.1CSPI03G04650.1mRNA