CSPI03G04370 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G04370
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	RNA polymerase II elongation factor
Location	Chr3: 3561983 .. 3563330 (-)
RNA-Seq Expression	CSPI03G04370
Synteny	CSPI03G04370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTCAAAACTCAACAAAATTCCAATTCCAAACTCAAAATCATCGAAGTTCAAATCTCCAATGGCCGAAACCAAAGATTCCACTGCTGCCCACATAGTTGAAATCCCAGTAGAACAAGAAAACCACACTCAAAACCTCATGATCTCTGTAATTCAACACCACCCATTGCGACAAATTTCTGAAAGCTCCGGCCATTTATTACTCTTAAAGCTTTGGCAAAGAGATGAGCATCTCTTCGGTCTCAGAATCGGACGTCGAGAGACAAAAATGGAGTCATTAAAGCAACAAATCTTTCAACTATGTTGCTTCTTCTTCCTCTTCCATGCCCTCTCTCTCACTCTCTTGTACACTTCCTCTGATCCCATTGTGTGTAAGAAATGGTGGGTTCCGGCAGTGTTGATAGGGGCGACGTCTGGGGTGTTCGTGATCGTGGTGCAGCTGAAATTGTGGATGTATTGGAAAGCAAGAGGGCAGTTACAGAAGGAGAAGACTGAAAACAGAGCACTTACAAGATGTGTTCAAGAACTTAGAATGAAAGGATCTTGCTTTAATTTGTCTAAAGAACCACAAATTGGGAATAGAATGAAGAGTTCTAGTGTGGAGATTAAATGGGGGCCTCTCACTTGGTTTTCAAGGAATTTCATTACCATTTCTCTTCTTGGCTTTTCTGCCATGATTTTTGTTACTTCCAAGTTCATTCTTTGCGGCTTTTAATTGCCATTCGTCAGGTAAAACCTCCTTATAATGTGATTCTTTTTTCGGTAAATTACAATAAACAACACGAAAGTATGGTAGGAGTTGCCAATTTCTACAAATATTATATGTTCGAAGTTTTAACATCAATTGAGTCAACTTTTATCATTGAAAGTTCCAAGGGGTGTAAGTTGTTACAATTTGCTCTTATTTTTTTTAGGTTTGTTGGTGGCAGCTTAGTTGAATAATTCTTCTTGGATTTTTTTCTCACTATGACAAATGTCAAAATGGGTTGATATTTTGGTTTCTAACAATTTGGGTTTTGATGTAAATAAAGCAGCAGGTGCTTGAAGAATTAAATATGCAATGGAGGATGAAGCAAGATGGGTCCGACATAAAAAATATCATTAGAGGGAAGCAAGGGAGGCTCCATTTTTGTAGAATCTTTACAAATTATGAAGAGAAGGATAGTGAGGAAAGTGTTGGCTTTTGAAGTGAACTAAAAATCAGTGTTAATTAAGGCAACACTGCTTGTGTGACAACTTTTTGTTTTGGCTTTCTAAGCCTAATTAATGACTTGTCAATTTTGAAATTGGCCATATGTAACTTTTTGGCTATTTATTATTTATTATTGATATATACATCCAATTCATTAT

mRNA sequence

CTTCAAAACTCAACAAAATTCCAATTCCAAACTCAAAATCATCGAAGTTCAAATCTCCAATGGCCGAAACCAAAGATTCCACTGCTGCCCACATAGTTGAAATCCCAGTAGAACAAGAAAACCACACTCAAAACCTCATGATCTCTGTAATTCAACACCACCCATTGCGACAAATTTCTGAAAGCTCCGGCCATTTATTACTCTTAAAGCTTTGGCAAAGAGATGAGCATCTCTTCGGTCTCAGAATCGGACGTCGAGAGACAAAAATGGAGTCATTAAAGCAACAAATCTTTCAACTATGTTGCTTCTTCTTCCTCTTCCATGCCCTCTCTCTCACTCTCTTGTACACTTCCTCTGATCCCATTGTGTGTAAGAAATGGTGGGTTCCGGCAGTGTTGATAGGGGCGACGTCTGGGGTGTTCGTGATCGTGGTGCAGCTGAAATTGTGGATGTATTGGAAAGCAAGAGGGCAGTTACAGAAGGAGAAGACTGAAAACAGAGCACTTACAAGATGTGTTCAAGAACTTAGAATGAAAGGATCTTGCTTTAATTTGTCTAAAGAACCACAAATTGGGAATAGAATGAAGAGTTCTAGTGTGGAGATTAAATGGGGGCCTCTCACTTGGTTTTCAAGGAATTTCATTACCATTTCTCTTCTTGGCTTTTCTGCCATGATTTTTGTTACTTCCAAGTTCATTCTTTGCGGCTTTTAATTGCCATTCGTCAGCAGGTGCTTGAAGAATTAAATATGCAATGGAGGATGAAGCAAGATGGGTCCGACATAAAAAATATCATTAGAGGGAAGCAAGGGAGGCTCCATTTTTGTAGAATCTTTACAAATTATGAAGAGAAGGATAGTGAGGAAAGTGTTGGCTTTTGAAGTGAACTAAAAATCAGTGTTAATTAAGGCAACACTGCTTGTGTGACAACTTTTTGTTTTGGCTTTCTAAGCCTAATTAATGACTTGTCAATTTTGAAATTGGCCATATGTAACTTTTTGGCTATTTATTATTTATTATTGATATATACATCCAATTCATTAT

Coding sequence (CDS)

ATGGCCGAAACCAAAGATTCCACTGCTGCCCACATAGTTGAAATCCCAGTAGAACAAGAAAACCACACTCAAAACCTCATGATCTCTGTAATTCAACACCACCCATTGCGACAAATTTCTGAAAGCTCCGGCCATTTATTACTCTTAAAGCTTTGGCAAAGAGATGAGCATCTCTTCGGTCTCAGAATCGGACGTCGAGAGACAAAAATGGAGTCATTAAAGCAACAAATCTTTCAACTATGTTGCTTCTTCTTCCTCTTCCATGCCCTCTCTCTCACTCTCTTGTACACTTCCTCTGATCCCATTGTGTGTAAGAAATGGTGGGTTCCGGCAGTGTTGATAGGGGCGACGTCTGGGGTGTTCGTGATCGTGGTGCAGCTGAAATTGTGGATGTATTGGAAAGCAAGAGGGCAGTTACAGAAGGAGAAGACTGAAAACAGAGCACTTACAAGATGTGTTCAAGAACTTAGAATGAAAGGATCTTGCTTTAATTTGTCTAAAGAACCACAAATTGGGAATAGAATGAAGAGTTCTAGTGTGGAGATTAAATGGGGGCCTCTCACTTGGTTTTCAAGGAATTTCATTACCATTTCTCTTCTTGGCTTTTCTGCCATGATTTTTGTTACTTCCAAGTTCATTCTTTGCGGCTTTTAA

Protein sequence

MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVLIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLLGFSAMIFVTSKFILCGF*

Homology

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BLAST of CSPI03G04370 vs. ExPASy TrEMBL
Match: A0A0A0L2U7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G061020 PE=4 SV=1)

HSP 1 Score: 432.6 bits (1111), Expect = 1.0e-117
Identity = 215/217 (99.08%), Postives = 217/217 (100.00%), Query Frame = 0


Query: 1   MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFG 60
           MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFG
Sbjct: 1   MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFG 60

Query: 61  LRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVLIGATSGV 120
           LRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAV+IGATSGV
Sbjct: 61  LRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGV 120

Query: 121 FVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSV 180
           FVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSV
Sbjct: 121 FVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSV 180

Query: 181 EIKWGPLTWFSRNFITISLLGFSAMIFVTSKFILCGF 218
           EIKWGPLTWFSRNFITISLLGFSA+IFVTSKFILCGF
Sbjct: 181 EIKWGPLTWFSRNFITISLLGFSAIIFVTSKFILCGF 217

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BLAST of CSPI03G04370 vs. ExPASy TrEMBL
Match: A0A1S3BL81 (uncharacterized protein LOC103491049 OS=Cucumis melo OX=3656 GN=LOC103491049 PE=4 SV=1)

HSP 1 Score: 421.4 bits (1082), Expect = 2.3e-114
Identity = 207/217 (95.39%), Postives = 213/217 (98.16%), Query Frame = 0


Query: 1   MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFG 60
           MA+TKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFG
Sbjct: 1   MAQTKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFG 60

Query: 61  LRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVLIGATSGV 120
           LRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAV+IGATSGV
Sbjct: 61  LRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGV 120

Query: 121 FVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSV 180
           FVIVVQLKLWMYWKARGQLQ+EK+ENRALTRC QELRMKGSCFNLSKEPQIGNRMKSSSV
Sbjct: 121 FVIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKSSSV 180

Query: 181 EIKWGPLTWFSRNFITISLLGFSAMIFVTSKFILCGF 218
           EIKWGPLTWFSRNFI ISLLGFSA++F  SKFILCGF
Sbjct: 181 EIKWGPLTWFSRNFIAISLLGFSAIVFAASKFILCGF 217

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BLAST of CSPI03G04370 vs. ExPASy TrEMBL
Match: A0A6J1HN07 (uncharacterized protein LOC111465114 OS=Cucurbita maxima OX=3661 GN=LOC111465114 PE=4 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 5.9e-94
Identity = 179/215 (83.26%), Postives = 193/215 (89.77%), Query Frame = 0


Query: 3   ETKDSTAA-HIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGL 62
           ETKDS AA HIVEIP E     QN+MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGL
Sbjct: 4   ETKDSGAATHIVEIPAE----NQNIMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGL 63

Query: 63  RIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVLIGATSGVF 122
           RIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+TSSDP VC KWWVP V +GATSGVF
Sbjct: 64  RIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVF 123

Query: 123 VIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVE 182
           VIVVQLKLW+YWKA  QLQ+EK+ENRALTR VQELRMKGSCFNLSKEPQIG+RMKSSSVE
Sbjct: 124 VIVVQLKLWLYWKASAQLQREKSENRALTRIVQELRMKGSCFNLSKEPQIGHRMKSSSVE 183

Query: 183 IKWGPLTWFSRNFITISLLGFSAMIFVTSKFILCG 217
           IKWGPLTW SRNF+TI LL FS ++F  SKFILCG
Sbjct: 184 IKWGPLTWLSRNFVTIFLLCFSGIVFGASKFILCG 214

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BLAST of CSPI03G04370 vs. ExPASy TrEMBL
Match: A0A6J1EWB5 (uncharacterized protein LOC111438709 OS=Cucurbita moschata OX=3662 GN=LOC111438709 PE=4 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 1.3e-93
Identity = 178/215 (82.79%), Postives = 193/215 (89.77%), Query Frame = 0


Query: 3   ETKDS-TAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGL 62
           ETKDS  AAH+VEIP E     QN+MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGL
Sbjct: 4   ETKDSGAAAHVVEIPAE----NQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGL 63

Query: 63  RIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVLIGATSGVF 122
           RIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+TSSDP VC KWWVP V +GATSGVF
Sbjct: 64  RIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVF 123

Query: 123 VIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVE 182
           VIVVQLKLW+YWKA  QLQ+EK+ENRALTRCVQELRMKGSCFNLSKEPQIG+RMKSSSVE
Sbjct: 124 VIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVE 183

Query: 183 IKWGPLTWFSRNFITISLLGFSAMIFVTSKFILCG 217
           IKWGPLT  SRNF+TI LL FS ++F  SKFILCG
Sbjct: 184 IKWGPLTLLSRNFVTIVLLCFSGIVFGASKFILCG 214

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BLAST of CSPI03G04370 vs. ExPASy TrEMBL
Match: A0A5A7VJ68 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold546G001520 PE=4 SV=1)

HSP 1 Score: 289.7 bits (740), Expect = 1.0e-74
Identity = 140/148 (94.59%), Postives = 145/148 (97.97%), Query Frame = 0


Query: 70  MESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVLIGATSGVFVIVVQLKL 129
           MESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAV+IGATSGVFVIVVQLKL
Sbjct: 1   MESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGVFVIVVQLKL 60

Query: 130 WMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTW 189
           WMYWKARGQLQ+EK+ENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTW
Sbjct: 61  WMYWKARGQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPLTW 120

Query: 190 FSRNFITISLLGFSAMIFVTSKFILCGF 218
           FSRNFI ISLLGFSA++F  SKFILCGF
Sbjct: 121 FSRNFIAISLLGFSAIVFAASKFILCGF 148

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BLAST of CSPI03G04370 vs. NCBI nr
Match: XP_004149573.1 (uncharacterized protein LOC101219596 [Cucumis sativus] >XP_011650492.1 uncharacterized protein LOC101219596 [Cucumis sativus] >KGN56048.1 hypothetical protein Csa_010603 [Cucumis sativus])

HSP 1 Score: 432.6 bits (1111), Expect = 2.1e-117
Identity = 215/217 (99.08%), Postives = 217/217 (100.00%), Query Frame = 0


Query: 1   MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFG 60
           MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFG
Sbjct: 1   MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFG 60

Query: 61  LRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVLIGATSGV 120
           LRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAV+IGATSGV
Sbjct: 61  LRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGV 120

Query: 121 FVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSV 180
           FVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSV
Sbjct: 121 FVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSV 180

Query: 181 EIKWGPLTWFSRNFITISLLGFSAMIFVTSKFILCGF 218
           EIKWGPLTWFSRNFITISLLGFSA+IFVTSKFILCGF
Sbjct: 181 EIKWGPLTWFSRNFITISLLGFSAIIFVTSKFILCGF 217

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BLAST of CSPI03G04370 vs. NCBI nr
Match: XP_008449068.1 (PREDICTED: uncharacterized protein LOC103491049 [Cucumis melo] >XP_008449069.1 PREDICTED: uncharacterized protein LOC103491049 [Cucumis melo])

HSP 1 Score: 421.4 bits (1082), Expect = 4.8e-114
Identity = 207/217 (95.39%), Postives = 213/217 (98.16%), Query Frame = 0


Query: 1   MAETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFG 60
           MA+TKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFG
Sbjct: 1   MAQTKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFG 60

Query: 61  LRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVLIGATSGV 120
           LRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAV+IGATSGV
Sbjct: 61  LRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVVIGATSGV 120

Query: 121 FVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSV 180
           FVIVVQLKLWMYWKARGQLQ+EK+ENRALTRC QELRMKGSCFNLSKEPQIGNRMKSSSV
Sbjct: 121 FVIVVQLKLWMYWKARGQLQREKSENRALTRCAQELRMKGSCFNLSKEPQIGNRMKSSSV 180

Query: 181 EIKWGPLTWFSRNFITISLLGFSAMIFVTSKFILCGF 218
           EIKWGPLTWFSRNFI ISLLGFSA++F  SKFILCGF
Sbjct: 181 EIKWGPLTWFSRNFIAISLLGFSAIVFAASKFILCGF 217

[Close]

BLAST of CSPI03G04370 vs. NCBI nr
Match: XP_038905570.1 (uncharacterized protein LOC120091553 [Benincasa hispida] >XP_038905571.1 uncharacterized protein LOC120091553 [Benincasa hispida])

HSP 1 Score: 399.4 bits (1025), Expect = 1.9e-107
Identity = 202/219 (92.24%), Postives = 207/219 (94.52%), Query Frame = 0


Query: 1   MAETKDSTAAHIVEIPVEQENHTQNL--MISVIQHHPLRQISESSGHLLLLKLWQRDEHL 60
           MAETKDS  AHIVEIPVEQENHTQN   MISVIQHHPLRQISESSGHLLLLKLWQRDEHL
Sbjct: 1   MAETKDS-GAHIVEIPVEQENHTQNQNPMISVIQHHPLRQISESSGHLLLLKLWQRDEHL 60

Query: 61  FGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVLIGATS 120
           FGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDP VCKKWWVPAV +GATS
Sbjct: 61  FGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPNVCKKWWVPAVAMGATS 120

Query: 121 GVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSS 180
           GVFVIVVQLKLW+YWKA GQLQ+EKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSS
Sbjct: 121 GVFVIVVQLKLWLYWKASGQLQREKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSS 180

Query: 181 SVEIKWGPLTWFSRNFITISLLGFSAMIFVTSKFILCGF 218
           SVEIKWGPLTWFSRNFITI LLGFSA++F  SKFILC F
Sbjct: 181 SVEIKWGPLTWFSRNFITIFLLGFSAIVFAASKFILCAF 218

[Close]

BLAST of CSPI03G04370 vs. NCBI nr
Match: XP_023553388.1 (uncharacterized protein LOC111810817 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 360.9 bits (925), Expect = 7.6e-96
Identity = 178/214 (83.18%), Postives = 194/214 (90.65%), Query Frame = 0


Query: 3   ETKDSTAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGLR 62
           ET+DS AAH+VEIP E     QN+MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGLR
Sbjct: 4   ETRDSGAAHVVEIPAE----NQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGLR 63

Query: 63  IGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVLIGATSGVFV 122
           +GRRETKMESLKQQIFQLCC+FFLFHALSLTLL+TSSDP VC KWWVP V +GATSGVFV
Sbjct: 64  VGRRETKMESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVFV 123

Query: 123 IVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEI 182
           IVVQLKLW+YWKA  QLQ+EK+ENRALTRCVQELRMKGSCFNLSKEPQIG+RMKSSSVEI
Sbjct: 124 IVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVEI 183

Query: 183 KWGPLTWFSRNFITISLLGFSAMIFVTSKFILCG 217
           KWGPLTW SRNF+TI LL FS ++F  SKFILCG
Sbjct: 184 KWGPLTWLSRNFVTIVLLCFSGIVFGASKFILCG 213

[Close]

BLAST of CSPI03G04370 vs. NCBI nr
Match: KAG7015562.1 (hypothetical protein SDJN02_23198, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 357.5 bits (916), Expect = 8.4e-95
Identity = 179/215 (83.26%), Postives = 194/215 (90.23%), Query Frame = 0


Query: 3   ETKDS-TAAHIVEIPVEQENHTQNLMISVIQHHPLRQISESSGHLLLLKLWQRDEHLFGL 62
           ETKDS  AAH+VEIP E     QN+MISVI+ HPLRQISESSGHLLLLKLWQR+EHLFGL
Sbjct: 4   ETKDSGAAAHVVEIPAE----NQNVMISVIEQHPLRQISESSGHLLLLKLWQREEHLFGL 63

Query: 63  RIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSSDPIVCKKWWVPAVLIGATSGVF 122
           RIGRRETK+ESLKQQIFQLCC+FFLFHALSLTLL+TSSDP VC KWWVP V +GATSGVF
Sbjct: 64  RIGRRETKLESLKQQIFQLCCYFFLFHALSLTLLFTSSDPNVCHKWWVPGVAMGATSGVF 123

Query: 123 VIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVE 182
           VIVVQLKLW+YWKA  QLQ+EK+ENRALTRCVQELRMKGSCFNLSKEPQIG+RMKSSSVE
Sbjct: 124 VIVVQLKLWLYWKASAQLQREKSENRALTRCVQELRMKGSCFNLSKEPQIGHRMKSSSVE 183

Query: 183 IKWGPLTWFSRNFITISLLGFSAMIFVTSKFILCG 217
           IKWGPLTW SRNF+TI LL FS ++F  SKFILCG
Sbjct: 184 IKWGPLTWLSRNFVTIFLLCFSGIVFGASKFILCG 214

[Close]

BLAST of CSPI03G04370 vs. TAIR 10
Match: AT5G56120.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G12870.1); Has 77 Blast hits to 75 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 236.5 bits (602), Expect = 2.0e-62
Identity = 129/239 (53.97%), Postives = 164/239 (68.62%), Query Frame = 0


Query: 1   MAETKDSTAAHIVEIPVEQEN----HTQNL---------MISVIQHHPLRQISESSGHLL 60
           MA TKDS   H+VEIPV++E+      Q L         ++ VIQ HPL +ISES GHLL
Sbjct: 1   MAGTKDS---HVVEIPVDEEHKERQQQQQLVAVSNPGMGILKVIQQHPLSEISESPGHLL 60

Query: 61  LLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLTLLYTSS-------- 120
           LLKLWQR+E LF  R+  +E+++ES+K++IFQLCCFF +FH    TL+Y+SS        
Sbjct: 61  LLKLWQREEDLFCRRVLLKESRLESIKREIFQLCCFFLVFHGFFFTLVYSSSCSDDADVV 120

Query: 121 -DPIVCKKWWVPAVLIGATSGVFVIVVQLKLWMYWKARGQLQKEKTENRALTRCVQELRM 180
               VCKKWW+P+ +  ATS V V +VQ KL+++WK    + +E+ +NR LTRCV ELRM
Sbjct: 121 KSNAVCKKWWIPSAVSLATSLVLVFLVQAKLFVFWKVYRGVNRERNDNRTLTRCVLELRM 180

Query: 181 KGSCFNLSKEPQIGNRMKSSSVEIKWGPLTWFSRNFITISLLGFSAMIFVTSKFILCGF 218
           KGS F+LSKEP  G RMKSSSVEIKW P+TWFS+  ITI LL  + + F  SKFILCGF
Sbjct: 181 KGSSFDLSKEPMSGKRMKSSSVEIKWKPVTWFSQYLITIVLLCSAGLFFPVSKFILCGF 236

[Close]

BLAST of CSPI03G04370 vs. TAIR 10
Match: AT3G12870.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56120.1); Has 70 Blast hits to 70 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 110.9 bits (276), Expect = 1.3e-24
Identity = 66/190 (34.74%), Postives = 110/190 (57.89%), Query Frame = 0


Query: 34  HPLRQISESSGHLLLLKLWQRDEHLFGLRIGRRETKMESLKQQIFQLCCFFFLFHALSLT 93
           HPL QI+++  H LLLK W ++E L   R+  +E++++S++++I QL  FFFLFH++SL 
Sbjct: 18  HPLHQIADTPTHKLLLKQWLKEEELILSRVSHKESQIDSVRREITQLYIFFFLFHSISLL 77

Query: 94  LLY-------TSSDPIVCKKWWVPAVLIGATSGVFVIVVQLKLWMYWKARGQLQKEKTEN 153
           LL+       +S+    CK+ W+P++    +S   +  V+ K  +       L++EK + 
Sbjct: 78  LLFHASSSSSSSASSSACKRSWIPSLCALLSSLGIIWAVRYKSEVESHLEKLLEREKEDA 137

Query: 154 RALTRCVQELRMKGSCFNLSKEPQIGNRMKSSSVEIKWGPL-TWFSRNFITISLLGFSAM 213
           + L +CV+EL+ KG  F+L KE     R KS  VE K  P+  W +R+F+T+     S +
Sbjct: 138 KLLRKCVEELKKKGIEFDLLKEVDALRRAKSLRVESK--PVKKWSARDFVTLFFFSVSCL 197

Query: 214 IFVTSKFILC 216
           +    + ILC
Sbjct: 198 VLAMIRLILC 205

The following BLAST results are available for this feature:

BLAST of CSPI03G04370 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G04370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2U7	1.0e-117	99.08	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G061020 PE=4 SV=1	[more]
A0A1S3BL81	2.3e-114	95.39	uncharacterized protein LOC103491049 OS=Cucumis melo OX=3656 GN=LOC103491049 PE=...	[more]
A0A6J1HN07	5.9e-94	83.26	uncharacterized protein LOC111465114 OS=Cucurbita maxima OX=3661 GN=LOC111465114...	[more]
A0A6J1EWB5	1.3e-93	82.79	uncharacterized protein LOC111438709 OS=Cucurbita moschata OX=3662 GN=LOC1114387...	[more]
A0A5A7VJ68	1.0e-74	94.59	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CSPI03G04370 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004149573.1	2.1e-117	99.08	uncharacterized protein LOC101219596 [Cucumis sativus] >XP_011650492.1 uncharact...	[more]
XP_008449068.1	4.8e-114	95.39	PREDICTED: uncharacterized protein LOC103491049 [Cucumis melo] >XP_008449069.1 P...	[more]
XP_038905570.1	1.9e-107	92.24	uncharacterized protein LOC120091553 [Benincasa hispida] >XP_038905571.1 unchara...	[more]
XP_023553388.1	7.6e-96	83.18	uncharacterized protein LOC111810817 [Cucurbita pepo subsp. pepo]	[more]
KAG7015562.1	8.4e-95	83.26	hypothetical protein SDJN02_23198, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CSPI03G04370 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G56120.1	2.0e-62	53.97	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G12870.1	1.3e-24	34.74	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 139..159
None	No IPR available	PANTHER	PTHR33287:SF3	OS03G0453550 PROTEIN	coord: 20..216
None	No IPR available	PANTHER	PTHR33287	OS03G0453550 PROTEIN	coord: 20..216

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G04370.1	CSPI03G04370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane