CSPI03G04050 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G04050
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Chitin-binding lectin 1-like
Location	Chr3: 3337609 .. 3338007 (-)
RNA-Seq Expression	CSPI03G04050
Synteny	CSPI03G04050

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTCTGATGATGGATCAGTCAGAATCTGTGGAAGAGTGAATCCAAGAACATTCTTGAAAGTGATTGAAAAATCAGGCAAACATGCAGAGGTGAGAAGTATAAGATTTGATGGTGAAGCTGGAGATAGAAGATATTACCCTTCTTTTGGAGACGATGCTTCCAATCATTCTTCATACTCCAACCCTTACCAGAGCTATAATGAACAATCTCATTGGTTTGACAGATGTTACCCCAACCTACAGCGGCCGCAGCCATATCCTTGGCAATTAATGCTACCACAGCCGCAGCCCCAACCTGTGCCATGGCCAATGATGTGGCCGGGATGGCCGCAACCTGATAATCAATTTCTTGACGGAAACCAAAATAATTTTCAGAGATGCTGTACGGTTATGTAA

mRNA sequence

ATGGACTCTGATGATGGATCAGTCAGAATCTGTGGAAGAGTGAATCCAAGAACATTCTTGAAAGTGATTGAAAAATCAGGCAAACATGCAGAGGTGAGAAGTATAAGATTTGATGGTGAAGCTGGAGATAGAAGATATTACCCTTCTTTTGGAGACGATGCTTCCAATCATTCTTCATACTCCAACCCTTACCAGAGCTATAATGAACAATCTCATTGGTTTGACAGATGTTACCCCAACCTACAGCGGCCGCAGCCATATCCTTGGCAATTAATGCTACCACAGCCGCAGCCCCAACCTGTGCCATGGCCAATGATGTGGCCGGGATGGCCGCAACCTGATAATCAATTTCTTGACGGAAACCAAAATAATTTTCAGAGATGCTGTACGGTTATGTAA

Coding sequence (CDS)

ATGGACTCTGATGATGGATCAGTCAGAATCTGTGGAAGAGTGAATCCAAGAACATTCTTGAAAGTGATTGAAAAATCAGGCAAACATGCAGAGGTGAGAAGTATAAGATTTGATGGTGAAGCTGGAGATAGAAGATATTACCCTTCTTTTGGAGACGATGCTTCCAATCATTCTTCATACTCCAACCCTTACCAGAGCTATAATGAACAATCTCATTGGTTTGACAGATGTTACCCCAACCTACAGCGGCCGCAGCCATATCCTTGGCAATTAATGCTACCACAGCCGCAGCCCCAACCTGTGCCATGGCCAATGATGTGGCCGGGATGGCCGCAACCTGATAATCAATTTCTTGACGGAAACCAAAATAATTTTCAGAGATGCTGTACGGTTATGTAA

Protein sequence

MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVRSIRFDGEAGDRRYYPSFGDDASNHSSYSNPYQSYNEQSHWFDRCYPNLQRPQPYPWQLMLPQPQPQPVPWPMMWPGWPQPDNQFLDGNQNNFQRCCTVM*

Homology

[Close]

BLAST of CSPI03G04050 vs. ExPASy TrEMBL
Match: A0A0A0L264 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G047760 PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 4.1e-74
Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVRSIRFDGEAGDRRYYPSFGDDASNHSSY 60
           MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVRSIRFDGEAGDRRYYPSFGDDASNHSSY
Sbjct: 1   MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVRSIRFDGEAGDRRYYPSFGDDASNHSSY 60

Query: 61  SNPYQSYNEQSHWFDRCYPNLQRPQPYPWQLMLPQPQPQPVPWPMMWPGWPQPDNQFLDG 120
           SNPYQSYNEQSHWFDRCYPNLQRPQPYPWQLMLPQPQPQPV WPMMWPGWPQPDNQFLDG
Sbjct: 61  SNPYQSYNEQSHWFDRCYPNLQRPQPYPWQLMLPQPQPQPVSWPMMWPGWPQPDNQFLDG 120

Query: 121 NQNNFQRCCTVM 133
           NQNNFQRCCTVM
Sbjct: 121 NQNNFQRCCTVM 132

[Close]

BLAST of CSPI03G04050 vs. ExPASy TrEMBL
Match: A0A5A7VH99 (Chitin-binding lectin 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00100 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 5.2e-69
Identity = 122/132 (92.42%), Postives = 127/132 (96.21%), Query Frame = 0


Query: 1   MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVRSIRFDGEAGDRRYYPSFGDDASNHSSY 60
           MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVRSIRFDGEAGDRRYYPSFG+D +NHSSY
Sbjct: 43  MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVRSIRFDGEAGDRRYYPSFGEDTTNHSSY 102

Query: 61  SNPYQSYNEQSHWFDRCYPNLQRPQPYPWQLMLPQPQPQPVPWPMMWPGWPQPDNQFLDG 120
           SNPY SYNEQSHWFDR YPNLQRPQPYPWQLMLPQPQPQPVPWPM+WPGWP PDNQ+LDG
Sbjct: 103 SNPYHSYNEQSHWFDRSYPNLQRPQPYPWQLMLPQPQPQPVPWPMIWPGWPHPDNQYLDG 162

Query: 121 NQNNFQRCCTVM 133
           NQ+N QRCCTVM
Sbjct: 163 NQDNNQRCCTVM 174

[Close]

BLAST of CSPI03G04050 vs. ExPASy TrEMBL
Match: A0A1S3BL42 (uncharacterized protein LOC103491020 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103491020 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 5.2e-69
Identity = 122/132 (92.42%), Postives = 127/132 (96.21%), Query Frame = 0


Query: 1   MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVRSIRFDGEAGDRRYYPSFGDDASNHSSY 60
           MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVRSIRFDGEAGDRRYYPSFG+D +NHSSY
Sbjct: 70  MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVRSIRFDGEAGDRRYYPSFGEDTTNHSSY 129

Query: 61  SNPYQSYNEQSHWFDRCYPNLQRPQPYPWQLMLPQPQPQPVPWPMMWPGWPQPDNQFLDG 120
           SNPY SYNEQSHWFDR YPNLQRPQPYPWQLMLPQPQPQPVPWPM+WPGWP PDNQ+LDG
Sbjct: 130 SNPYHSYNEQSHWFDRSYPNLQRPQPYPWQLMLPQPQPQPVPWPMIWPGWPHPDNQYLDG 189

Query: 121 NQNNFQRCCTVM 133
           NQ+N QRCCTVM
Sbjct: 190 NQDNNQRCCTVM 201

[Close]

BLAST of CSPI03G04050 vs. ExPASy TrEMBL
Match: A0A1S3BLR2 (uncharacterized protein LOC103491020 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491020 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 5.2e-69
Identity = 122/132 (92.42%), Postives = 127/132 (96.21%), Query Frame = 0


Query: 1   MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVRSIRFDGEAGDRRYYPSFGDDASNHSSY 60
           MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVRSIRFDGEAGDRRYYPSFG+D +NHSSY
Sbjct: 43  MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVRSIRFDGEAGDRRYYPSFGEDTTNHSSY 102

Query: 61  SNPYQSYNEQSHWFDRCYPNLQRPQPYPWQLMLPQPQPQPVPWPMMWPGWPQPDNQFLDG 120
           SNPY SYNEQSHWFDR YPNLQRPQPYPWQLMLPQPQPQPVPWPM+WPGWP PDNQ+LDG
Sbjct: 103 SNPYHSYNEQSHWFDRSYPNLQRPQPYPWQLMLPQPQPQPVPWPMIWPGWPHPDNQYLDG 162

Query: 121 NQNNFQRCCTVM 133
           NQ+N QRCCTVM
Sbjct: 163 NQDNNQRCCTVM 174

[Close]

BLAST of CSPI03G04050 vs. ExPASy TrEMBL
Match: A0A6J1EW45 (uncharacterized protein LOC111438728 OS=Cucurbita moschata OX=3662 GN=LOC111438728 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 8.4e-43
Identity = 94/136 (69.12%), Postives = 103/136 (75.74%), Query Frame = 0


Query: 1   MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVRSIRFDGEAGDRRYYPSFGDDASNHSSY 60
           MDSDDGSVRICGRVNPRTFLKVIE+SGKHAEV+SIRFDGEAGDRRYYP +GDD  +H   
Sbjct: 40  MDSDDGSVRICGRVNPRTFLKVIERSGKHAEVKSIRFDGEAGDRRYYP-YGDDPIHH--- 99

Query: 61  SNPYQSYNEQSHWFDRCYPNLQ--RPQPYPWQLMLPQPQPQPVPWPMMWPGWP--QPDNQ 120
             PYQ+  EQS WFD  YP      PQPYPWQ MLPQPQPQPVPWPM+ PG P   P  +
Sbjct: 100 --PYQNSQEQSRWFDTAYPQQPPLPPQPYPWQFMLPQPQPQPVPWPMIGPGGPPGNPAPE 159

Query: 121 FLDGNQNNFQRCCTVM 133
               + NN QRCCT+M
Sbjct: 160 EPSQDNNNSQRCCTIM 169

[Close]

BLAST of CSPI03G04050 vs. NCBI nr
Match: XP_004151526.2 (heavy metal-associated isoprenylated plant protein 34 [Cucumis sativus])

HSP 1 Score: 287.0 bits (733), Expect = 8.6e-74
Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVRSIRFDGEAGDRRYYPSFGDDASNHSSY 60
           MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVRSIRFDGEAGDRRYYPSFGDDASNHSSY
Sbjct: 43  MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVRSIRFDGEAGDRRYYPSFGDDASNHSSY 102

Query: 61  SNPYQSYNEQSHWFDRCYPNLQRPQPYPWQLMLPQPQPQPVPWPMMWPGWPQPDNQFLDG 120
           SNPYQSYNEQSHWFDRCYPNLQRPQPYPWQLMLPQPQPQPV WPMMWPGWPQPDNQFLDG
Sbjct: 103 SNPYQSYNEQSHWFDRCYPNLQRPQPYPWQLMLPQPQPQPVSWPMMWPGWPQPDNQFLDG 162

Query: 121 NQNNFQRCCTVM 133
           NQNNFQRCCTVM
Sbjct: 163 NQNNFQRCCTVM 174

[Close]

BLAST of CSPI03G04050 vs. NCBI nr
Match: KGN56015.1 (hypothetical protein Csa_011155 [Cucumis sativus])

HSP 1 Score: 287.0 bits (733), Expect = 8.6e-74
Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVRSIRFDGEAGDRRYYPSFGDDASNHSSY 60
           MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVRSIRFDGEAGDRRYYPSFGDDASNHSSY
Sbjct: 1   MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVRSIRFDGEAGDRRYYPSFGDDASNHSSY 60

Query: 61  SNPYQSYNEQSHWFDRCYPNLQRPQPYPWQLMLPQPQPQPVPWPMMWPGWPQPDNQFLDG 120
           SNPYQSYNEQSHWFDRCYPNLQRPQPYPWQLMLPQPQPQPV WPMMWPGWPQPDNQFLDG
Sbjct: 61  SNPYQSYNEQSHWFDRCYPNLQRPQPYPWQLMLPQPQPQPVSWPMMWPGWPQPDNQFLDG 120

Query: 121 NQNNFQRCCTVM 133
           NQNNFQRCCTVM
Sbjct: 121 NQNNFQRCCTVM 132

[Close]

BLAST of CSPI03G04050 vs. NCBI nr
Match: XP_008449023.1 (PREDICTED: uncharacterized protein LOC103491020 isoform X1 [Cucumis melo])

HSP 1 Score: 270.0 bits (689), Expect = 1.1e-68
Identity = 122/132 (92.42%), Postives = 127/132 (96.21%), Query Frame = 0


Query: 1   MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVRSIRFDGEAGDRRYYPSFGDDASNHSSY 60
           MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVRSIRFDGEAGDRRYYPSFG+D +NHSSY
Sbjct: 70  MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVRSIRFDGEAGDRRYYPSFGEDTTNHSSY 129

Query: 61  SNPYQSYNEQSHWFDRCYPNLQRPQPYPWQLMLPQPQPQPVPWPMMWPGWPQPDNQFLDG 120
           SNPY SYNEQSHWFDR YPNLQRPQPYPWQLMLPQPQPQPVPWPM+WPGWP PDNQ+LDG
Sbjct: 130 SNPYHSYNEQSHWFDRSYPNLQRPQPYPWQLMLPQPQPQPVPWPMIWPGWPHPDNQYLDG 189

Query: 121 NQNNFQRCCTVM 133
           NQ+N QRCCTVM
Sbjct: 190 NQDNNQRCCTVM 201

[Close]

BLAST of CSPI03G04050 vs. NCBI nr
Match: XP_008449024.1 (PREDICTED: uncharacterized protein LOC103491020 isoform X2 [Cucumis melo] >KAA0065726.1 chitin-binding lectin 1-like [Cucumis melo var. makuwa] >TYK13752.1 chitin-binding lectin 1-like [Cucumis melo var. makuwa])

HSP 1 Score: 270.0 bits (689), Expect = 1.1e-68
Identity = 122/132 (92.42%), Postives = 127/132 (96.21%), Query Frame = 0


Query: 1   MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVRSIRFDGEAGDRRYYPSFGDDASNHSSY 60
           MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVRSIRFDGEAGDRRYYPSFG+D +NHSSY
Sbjct: 43  MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVRSIRFDGEAGDRRYYPSFGEDTTNHSSY 102

Query: 61  SNPYQSYNEQSHWFDRCYPNLQRPQPYPWQLMLPQPQPQPVPWPMMWPGWPQPDNQFLDG 120
           SNPY SYNEQSHWFDR YPNLQRPQPYPWQLMLPQPQPQPVPWPM+WPGWP PDNQ+LDG
Sbjct: 103 SNPYHSYNEQSHWFDRSYPNLQRPQPYPWQLMLPQPQPQPVPWPMIWPGWPHPDNQYLDG 162

Query: 121 NQNNFQRCCTVM 133
           NQ+N QRCCTVM
Sbjct: 163 NQDNNQRCCTVM 174

[Close]

BLAST of CSPI03G04050 vs. NCBI nr
Match: XP_038905214.1 (heavy metal-associated isoprenylated plant protein 42 isoform X2 [Benincasa hispida])

HSP 1 Score: 227.6 bits (579), Expect = 6.2e-56
Identity = 109/134 (81.34%), Postives = 117/134 (87.31%), Query Frame = 0


Query: 1   MDSDDGSVRICGRVNPRTFLKVIEKSGKHAEVRSIRFDGEAGDRRYYPSFGDDASNHSSY 60
           MDS+DGSVRICGRVNPRTFLKVIE SGKHAEV+SIRFDGEAGDRRYYP +GDD SN+ SY
Sbjct: 117 MDSEDGSVRICGRVNPRTFLKVIEMSGKHAEVKSIRFDGEAGDRRYYP-YGDDPSNYLSY 176

Query: 61  SNPYQSYNEQSHWFDRCYPNLQRPQPYPWQLML--PQPQPQPVPWPMMWPGWPQPDNQFL 120
            N YQSY EQ HWFDR YPNL RPQPYPWQLML  PQPQPQPVP P++WPGWP PDNQ L
Sbjct: 177 PNLYQSYPEQCHWFDRTYPNLPRPQPYPWQLMLPQPQPQPQPVPGPVIWPGWPHPDNQSL 236

Query: 121 DGNQNNFQRCCTVM 133
           + N+NN QRCCTVM
Sbjct: 237 EANENNNQRCCTVM 249

The following BLAST results are available for this feature:

BLAST of CSPI03G04050 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G04050 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L264	4.1e-74	99.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G047760 PE=4 SV=1	[more]
A0A5A7VH99	5.2e-69	92.42	Chitin-binding lectin 1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3BL42	5.2e-69	92.42	uncharacterized protein LOC103491020 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3BLR2	5.2e-69	92.42	uncharacterized protein LOC103491020 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A6J1EW45	8.4e-43	69.12	uncharacterized protein LOC111438728 OS=Cucurbita moschata OX=3662 GN=LOC1114387...	[more]

BLAST of CSPI03G04050 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004151526.2	8.6e-74	99.24	heavy metal-associated isoprenylated plant protein 34 [Cucumis sativus]	[more]
KGN56015.1	8.6e-74	99.24	hypothetical protein Csa_011155 [Cucumis sativus]	[more]
XP_008449023.1	1.1e-68	92.42	PREDICTED: uncharacterized protein LOC103491020 isoform X1 [Cucumis melo]	[more]
XP_008449024.1	1.1e-68	92.42	PREDICTED: uncharacterized protein LOC103491020 isoform X2 [Cucumis melo] >KAA00...	[more]
XP_038905214.1	6.2e-56	81.34	heavy metal-associated isoprenylated plant protein 42 isoform X2 [Benincasa hisp...	[more]

BLAST of CSPI03G04050 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR45868	HEAVY METAL-ASSOCIATED ISOPRENYLATED PLANT PROTEIN 33-RELATED	coord: 1..99
None	No IPR available	PANTHER	PTHR45868:SF53	HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN	coord: 1..99

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G04050.1	CSPI03G04050.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0046872	metal ion binding