CSPI03G01170 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI03G01170
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr3: 836275 .. 836586 (+)
RNA-Seq ExpressionCSPI03G01170
SyntenyCSPI03G01170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAATATTATGATCTAAATAAACCAATCACAAGAAACCAAGGGGAGGAGTTGATAGCACATAAATATAGCATGACAACATCCACACTTACCTCGGTTGTTCTTCGATATTTATTCTTTGGTGTAATGATGTTTACTATAATAACAACAATATCCGTAACCAATGCACCTTCAACTTATGGCAACTATGAATATCAAGTGAAGGGAGATGATGGTCATTTGAAGGACGATTCGGAAATTGTGACAGACTACGTCGACTGGAGTCCGAACCCAATATTTGGGGGAGGAAGAGCAGGCCTCATTCCCCATTAA

mRNA sequence

ATGAAATATTATGATCTAAATAAACCAATCACAAGAAACCAAGGGGAGGAGTTGATAGCACATAAATATAGCATGACAACATCCACACTTACCTCGGTTGTTCTTCGATATTTATTCTTTGGTGTAATGATGTTTACTATAATAACAACAATATCCGTAACCAATGCACCTTCAACTTATGGCAACTATGAATATCAAGTGAAGGGAGATGATGGTCATTTGAAGGACGATTCGGAAATTGTGACAGACTACGTCGACTGGAGTCCGAACCCAATATTTGGGGGAGGAAGAGCAGGCCTCATTCCCCATTAA

Coding sequence (CDS)

ATGAAATATTATGATCTAAATAAACCAATCACAAGAAACCAAGGGGAGGAGTTGATAGCACATAAATATAGCATGACAACATCCACACTTACCTCGGTTGTTCTTCGATATTTATTCTTTGGTGTAATGATGTTTACTATAATAACAACAATATCCGTAACCAATGCACCTTCAACTTATGGCAACTATGAATATCAAGTGAAGGGAGATGATGGTCATTTGAAGGACGATTCGGAAATTGTGACAGACTACGTCGACTGGAGTCCGAACCCAATATTTGGGGGAGGAAGAGCAGGCCTCATTCCCCATTAA

Protein sequence

MKYYDLNKPITRNQGEELIAHKYSMTTSTLTSVVLRYLFFGVMMFTIITTISVTNAPSTYGNYEYQVKGDDGHLKDDSEIVTDYVDWSPNPIFGGGRAGLIPH*
Homology
BLAST of CSPI03G01170 vs. ExPASy TrEMBL
Match: A0A0A0L6C3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006675 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 7.8e-28
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0

Query: 43  MMFTIITTISVTNAPSTYGNYEYQVKGDDGHLKDDSEIVTDYVDWSPNPIFGGGRAGLIP 102
           MMFTIITTISVTNAPSTYGNYEYQVKGDDGHLKDDSEIVTDYVDWSPNPIFGGGRAGLIP
Sbjct: 1   MMFTIITTISVTNAPSTYGNYEYQVKGDDGHLKDDSEIVTDYVDWSPNPIFGGGRAGLIP 60

Query: 103 H 104
           H
Sbjct: 61  H 61

BLAST of CSPI03G01170 vs. NCBI nr
Match: KGN55706.1 (hypothetical protein Csa_010844 [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 1.6e-27
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0

Query: 43  MMFTIITTISVTNAPSTYGNYEYQVKGDDGHLKDDSEIVTDYVDWSPNPIFGGGRAGLIP 102
           MMFTIITTISVTNAPSTYGNYEYQVKGDDGHLKDDSEIVTDYVDWSPNPIFGGGRAGLIP
Sbjct: 1   MMFTIITTISVTNAPSTYGNYEYQVKGDDGHLKDDSEIVTDYVDWSPNPIFGGGRAGLIP 60

Query: 103 H 104
           H
Sbjct: 61  H 61

BLAST of CSPI03G01170 vs. NCBI nr
Match: KAG6608573.1 (hypothetical protein SDJN03_01915, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.6 bits (166), Expect = 3.7e-08
Identity = 46/92 (50.00%), Postives = 52/92 (56.52%), Query Frame = 0

Query: 25  MTTSTLTSVVLRYLFFGVMMFTIITTISVT-----------NAPST--YGNYEYQVKGDD 84
           M   TL S  L  LFFGVM FTIIT +S T            APST  +G +E +VKGD 
Sbjct: 1   MAGVTLAS-FLYSLFFGVMTFTIITALSKTAAGSRLLSPLSAAPSTTPHGIHESEVKGDH 60

Query: 85  GHLKDDSEIVTDYVDWSPNPIFGGGRAGLIPH 104
              K  SEIV DY  W+P P+FGGG A  IPH
Sbjct: 61  SRFKVLSEIVADYGYWNPTPVFGGGYADPIPH 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L6C37.8e-28100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006675 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KGN55706.11.6e-27100.00hypothetical protein Csa_010844 [Cucumis sativus][more]
KAG6608573.13.7e-0850.00hypothetical protein SDJN03_01915, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI03G01170.1CSPI03G01170.1mRNA