CSPI03G00980 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI03G00980
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Tr-type G domain-containing protein
Location	Chr3: 687562 .. 688306 (-)
RNA-Seq Expression	CSPI03G00980
Synteny	CSPI03G00980

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATTCATTTGATGCATAAAATGTCTAAGAAATCTCTTATGCTCTTTTCCCCCAAAAGCTATCATTTCCAATTTCCTTCCTATAAATTCAGCTTCTCCTCTTCTCCCTCTTCCTACCTTCATTTCACACTCTGTACTCAAAAGAAACAAAGAGAAAAGAAAATATGGCAGAGAAGAAATCGCCAATGGCTTCCCGGCTGCAGAAAGCATTGATGAAACTCAAGGCAGTTCTCCGTATCTGTCTCCTTCCCCGGCAACGGTCACGACGGCTCGGATCATTCGATTCCGACGACGATCAAAAAGTAGGTATACGGATTGTGTTGGAAGATCAGAGTAGAATCGCTGAGAGTTCTTTTGTGAGAAAGCTTGAGCGTGCTTCCAGTTCAAGATACGGAGGCTATGAAGAAGATGTCGATCAACGAGCGGAGATTTTCATCGAGAATTTCCGGCGTCAACTGAGGTTAGAACGACAGATTTCTTTGCAATTGAGGTATTATAGAGTTAATAGCTACGAAACAGAGTATGAACAGAGATCTCCGTCGTCGATTACGTGATATACTGAAATTGAAGTGAACTTGTTTTGTGTTGTTGAGTACTGTAATTAAATTTCTTTTCTAATTATTCACTTCTCTTGGAAACTGTTCATCGGCGATCGCTTCAATTTTTCAGATTTGTAATTGTTATTTTGTACAACGTTGTTGGTATTCATATAACTTGAATTTTAATGTCAATTTTTGTTTCGTTGG

mRNA sequence

GAATTCATTTGATGCATAAAATGTCTAAGAAATCTCTTATGCTCTTTTCCCCCAAAAGCTATCATTTCCAATTTCCTTCCTATAAATTCAGCTTCTCCTCTTCTCCCTCTTCCTACCTTCATTTCACACTCTGTACTCAAAAGAAACAAAGAGAAAAGAAAATATGGCAGAGAAGAAATCGCCAATGGCTTCCCGGCTGCAGAAAGCATTGATGAAACTCAAGGCAGTTCTCCGTATCTGTCTCCTTCCCCGGCAACGGTCACGACGGCTCGGATCATTCGATTCCGACGACGATCAAAAAGTAGGTATACGGATTGTGTTGGAAGATCAGAGTAGAATCGCTGAGAGTTCTTTTGTGAGAAAGCTTGAGCGTGCTTCCAGTTCAAGATACGGAGGCTATGAAGAAGATGTCGATCAACGAGCGGAGATTTTCATCGAGAATTTCCGGCGTCAACTGAGGTTAGAACGACAGATTTCTTTGCAATTGAGGTATTATAGAGTTAATAGCTACGAAACAGAGTATGAACAGAGATCTCCGTCGTCGATTACGTGATATACTGAAATTGAAGTGAACTTGTTTTGTGTTGTTGAGTACTGTAATTAAATTTCTTTTCTAATTATTCACTTCTCTTGGAAACTGTTCATCGGCGATCGCTTCAATTTTTCAGATTTGTAATTGTTATTTTGTACAACGTTGTTGGTATTCATATAACTTGAATTTTAATGTCAATTTTTGTTTCGTTGG

Coding sequence (CDS)

ATGGCAGAGAAGAAATCGCCAATGGCTTCCCGGCTGCAGAAAGCATTGATGAAACTCAAGGCAGTTCTCCGTATCTGTCTCCTTCCCCGGCAACGGTCACGACGGCTCGGATCATTCGATTCCGACGACGATCAAAAAGTAGGTATACGGATTGTGTTGGAAGATCAGAGTAGAATCGCTGAGAGTTCTTTTGTGAGAAAGCTTGAGCGTGCTTCCAGTTCAAGATACGGAGGCTATGAAGAAGATGTCGATCAACGAGCGGAGATTTTCATCGAGAATTTCCGGCGTCAACTGAGGTTAGAACGACAGATTTCTTTGCAATTGAGGTATTATAGAGTTAATAGCTACGAAACAGAGTATGAACAGAGATCTCCGTCGTCGATTACGTGA

Protein sequence

MAEKKSPMASRLQKALMKLKAVLRICLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQRSPSSIT*

Homology

[Close]

BLAST of CSPI03G00980 vs. ExPASy TrEMBL
Match: A0A0A0L4Z8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004530 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 4.3e-60
Identity = 128/129 (99.22%), Postives = 129/129 (100.00%), Query Frame = 0


Query: 1   MAEKKSPMASRLQKALMKLKAVLRICLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIA 60
           MAEKKSPMASRLQKALMKLKAVLR+CLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIA
Sbjct: 1   MAEKKSPMASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIA 60

Query: 61  ESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY 120
           ESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY
Sbjct: 61  ESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY 120

Query: 121 EQRSPSSIT 130
           EQRSPSSIT
Sbjct: 121 EQRSPSSIT 129

[Close]

BLAST of CSPI03G00980 vs. ExPASy TrEMBL
Match: A0A5D3CHZ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00970 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.7e-51
Identity = 114/129 (88.37%), Postives = 124/129 (96.12%), Query Frame = 0


Query: 1   MAEKKSPMASRLQKALMKLKAVLRICLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIA 60
           MAEKKSPMASRL+KAL+KL AV+R+CL+PR+RS+RLGSFDS DD+KVGIRIVLEDQSRIA
Sbjct: 1   MAEKKSPMASRLKKALIKLTAVVRLCLVPRRRSQRLGSFDS-DDRKVGIRIVLEDQSRIA 60

Query: 61  ESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY 120
           E+SF RKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY
Sbjct: 61  ENSFARKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY 120

Query: 121 EQRSPSSIT 130
           EQ SP SI+
Sbjct: 121 EQISPPSIS 128

[Close]

BLAST of CSPI03G00980 vs. ExPASy TrEMBL
Match: A0A6J1CW64 (uncharacterized protein LOC111014780 OS=Momordica charantia OX=3673 GN=LOC111014780 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 5.4e-26
Identity = 77/129 (59.69%), Postives = 98/129 (75.97%), Query Frame = 0


Query: 1   MAEKKSPMASRLQKALMKLKAVLR----ICLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQ 60
           MAEKKSP+  RL+KA+ K+ A+LR    +CL  R+ S RL SF S  D+ VG+R  LED+
Sbjct: 1   MAEKKSPLMPRLKKAVRKITALLRLNLSLCLARRRPSGRLRSF-SFSDRTVGLRSFLEDE 60

Query: 61  SRIAESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSY 120
             I E+  +R+LERASS RYG  E+DVD+R++IFI+NF R+LRLERQISLQLRYYR+NS 
Sbjct: 61  -EIGENCSMRRLERASSLRYGNAEDDVDKRSQIFIDNFLRRLRLERQISLQLRYYRINSS 120

Query: 121 ETEYEQRSP 126
            TE E+RSP
Sbjct: 121 GTEDEERSP 127

[Close]

BLAST of CSPI03G00980 vs. ExPASy TrEMBL
Match: A0A0A0L6A3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004520 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.9e-16
Identity = 68/123 (55.28%), Postives = 77/123 (62.60%), Query Frame = 0


Query: 8   MASRLQKALMKLKAVLRICLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFVRK 67
           MA RL++ L KLKA LR+CLL R+RS                R VLED          R 
Sbjct: 1   MALRLEETLNKLKAFLRLCLLLRRRS------------IYRTRNVLEDDQT------ARN 60

Query: 68  LERASSSRYGG---YEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRV--NSYETEYEQ 126
           LER SSSRY     +E+DVD RAEIFIENFRRQLRLERQISLQLR Y V  NS+ET+YE+
Sbjct: 61  LERDSSSRYESCEEFEDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEE 105

[Close]

BLAST of CSPI03G00980 vs. ExPASy TrEMBL
Match: A0A1R3J730 (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_19032 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.1e-10
Identity = 53/127 (41.73%), Postives = 75/127 (59.06%), Query Frame = 0


Query: 1   MAEKKSPMASRLQKALMKLKAVLRI--------CLLPRQRSRRLGSFDSDDDQKVGIRIV 60
           M  +   + SR +KA+ KL ++L +        C L R   R   +   +D  ++G+   
Sbjct: 1   MGREDGSILSRFKKAVKKLNSLLSLDLTKWRLSCFLRRASGRWRPTLSFND--RLGLHSF 60

Query: 61  LEDQSRIAESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYR 120
           LED+     SS VR L+R  S  YG  ++DVD+RAEIFI NFRRQL LERQ+SL+LRY R
Sbjct: 61  LEDEETNGRSS-VRALQRVRS--YGAGDDDVDKRAEIFISNFRRQLWLERQVSLELRYCR 120

[Close]

BLAST of CSPI03G00980 vs. NCBI nr
Match: XP_011652707.1 (uncharacterized protein LOC105435054 [Cucumis sativus])

HSP 1 Score: 227.6 bits (579), Expect = 6.0e-56
Identity = 121/122 (99.18%), Postives = 122/122 (100.00%), Query Frame = 0


Query: 8   MASRLQKALMKLKAVLRICLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFVRK 67
           MASRLQKALMKLKAVLR+CLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFVRK
Sbjct: 1   MASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIAESSFVRK 60

Query: 68  LERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQRSPSS 127
           LERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQRSPSS
Sbjct: 61  LERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQRSPSS 120

Query: 128 IT 130
           IT
Sbjct: 121 IT 122

[Close]

BLAST of CSPI03G00980 vs. NCBI nr
Match: KAA0052985.1 (hypothetical protein E6C27_scaffold344G00960 [Cucumis melo var. makuwa] >TYK11441.1 hypothetical protein E5676_scaffold139G00970 [Cucumis melo var. makuwa])

HSP 1 Score: 211.8 bits (538), Expect = 3.4e-51
Identity = 114/129 (88.37%), Postives = 124/129 (96.12%), Query Frame = 0


Query: 1   MAEKKSPMASRLQKALMKLKAVLRICLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIA 60
           MAEKKSPMASRL+KAL+KL AV+R+CL+PR+RS+RLGSFDS DD+KVGIRIVLEDQSRIA
Sbjct: 1   MAEKKSPMASRLKKALIKLTAVVRLCLVPRRRSQRLGSFDS-DDRKVGIRIVLEDQSRIA 60

Query: 61  ESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY 120
           E+SF RKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY
Sbjct: 61  ENSFARKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY 120

Query: 121 EQRSPSSIT 130
           EQ SP SI+
Sbjct: 121 EQISPPSIS 128

[Close]

BLAST of CSPI03G00980 vs. NCBI nr
Match: KAE8650012.1 (hypothetical protein Csa_009473 [Cucumis sativus])

HSP 1 Score: 198.4 bits (503), Expect = 3.9e-47
Identity = 111/128 (86.72%), Postives = 115/128 (89.84%), Query Frame = 0


Query: 1   MAEKKSPMASRLQKALMKLKAVLRICLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIA 60
           MAEKKSPMASRLQKALMKLKAVLR+CLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIA
Sbjct: 1   MAEKKSPMASRLQKALMKLKAVLRLCLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIA 60

Query: 61  ESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVN-SYETE 120
           ESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQL     + S+   
Sbjct: 61  ESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLSLRSTSFSFSQS 120

Query: 121 YEQRSPSS 128
            EQ+   S
Sbjct: 121 KEQKEMES 128

[Close]

BLAST of CSPI03G00980 vs. NCBI nr
Match: KAG6596691.1 (hypothetical protein SDJN03_09871, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028225.1 hypothetical protein SDJN02_09405, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 135.2 bits (339), Expect = 4.1e-28
Identity = 78/125 (62.40%), Postives = 98/125 (78.40%), Query Frame = 0


Query: 1   MAEKKSPMASRLQKALMKLKAVLRICLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQSRIA 60
           MA+KKSP+  RL+K+ +KL A LR+C+  RQ SRRL SF S DD+  G+R  LED+ RI 
Sbjct: 1   MAQKKSPLLFRLKKSAIKLTAFLRLCVARRQNSRRLRSFGS-DDRTAGLRSFLEDE-RIV 60

Query: 61  ESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEY 120
           E+  VRKLERASS+ Y  +E+DVD+R++IFI+ F RQLRLERQISLQLRY RVNS ETE 
Sbjct: 61  ENRSVRKLERASSASYVNFEDDVDKRSQIFIDKFLRQLRLERQISLQLRYCRVNSSETES 120

Query: 121 EQRSP 126
           E++SP
Sbjct: 121 EEKSP 123

[Close]

BLAST of CSPI03G00980 vs. NCBI nr
Match: XP_022145292.1 (uncharacterized protein LOC111014780 [Momordica charantia])

HSP 1 Score: 127.1 bits (318), Expect = 1.1e-25
Identity = 77/129 (59.69%), Postives = 98/129 (75.97%), Query Frame = 0


Query: 1   MAEKKSPMASRLQKALMKLKAVLR----ICLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQ 60
           MAEKKSP+  RL+KA+ K+ A+LR    +CL  R+ S RL SF S  D+ VG+R  LED+
Sbjct: 1   MAEKKSPLMPRLKKAVRKITALLRLNLSLCLARRRPSGRLRSF-SFSDRTVGLRSFLEDE 60

Query: 61  SRIAESSFVRKLERASSSRYGGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSY 120
             I E+  +R+LERASS RYG  E+DVD+R++IFI+NF R+LRLERQISLQLRYYR+NS 
Sbjct: 61  -EIGENCSMRRLERASSLRYGNAEDDVDKRSQIFIDNFLRRLRLERQISLQLRYYRINSS 120

Query: 121 ETEYEQRSP 126
            TE E+RSP
Sbjct: 121 GTEDEERSP 127

[Close]

BLAST of CSPI03G00980 vs. TAIR 10
Match: AT5G57510.1 (unknown protein; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.9 bits (115), Expect = 3.6e-06
Identity = 45/137 (32.85%), Postives = 69/137 (50.36%), Query Frame = 0


Query: 4   KKSPMASRLQKALMKLKAVLRI------CLLPRQRSRRLGSFDSDDDQKVGIRIVLEDQS 63
           K   + +RL++A+ K+K VL         L+P      LGS  S       +R+   D+ 
Sbjct: 5   KDGSLLNRLRQAVNKVKFVLSFKINSLWGLVP-----MLGSSSSSS----SLRLSFNDRP 64

Query: 64  RIAESSFVRKLERASSSRYGGY---------EEDVDQRAEIFIENFRRQLRLERQISLQL 123
            +  +    + +   SSR   Y         +ED+D +AE+FI NF RQL++ERQISL+L
Sbjct: 65  GLTAAFTENEPDSTGSSRGALYRTVSYDQSSDEDIDNKAEMFIANFYRQLKIERQISLEL 124

Query: 124 RYYRVNSYETEYEQRSP 126
           +Y + N+    Y  RSP
Sbjct: 125 KYCQGNNQSFNY--RSP 130

The following BLAST results are available for this feature:

BLAST of CSPI03G00980 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI03G00980 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4Z8	4.3e-60	99.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004530 PE=4 SV=1	[more]
A0A5D3CHZ5	1.7e-51	88.37	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1CW64	5.4e-26	59.69	uncharacterized protein LOC111014780 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A0A0L6A3	2.9e-16	55.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G004520 PE=4 SV=1	[more]
A0A1R3J730	1.1e-10	41.73	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_19032 PE=4 SV=1	[more]

BLAST of CSPI03G00980 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011652707.1	6.0e-56	99.18	uncharacterized protein LOC105435054 [Cucumis sativus]	[more]
KAA0052985.1	3.4e-51	88.37	hypothetical protein E6C27_scaffold344G00960 [Cucumis melo var. makuwa] >TYK1144...	[more]
KAE8650012.1	3.9e-47	86.72	hypothetical protein Csa_009473 [Cucumis sativus]	[more]
KAG6596691.1	4.1e-28	62.40	hypothetical protein SDJN03_09871, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022145292.1	1.1e-25	59.69	uncharacterized protein LOC111014780 [Momordica charantia]	[more]

BLAST of CSPI03G00980 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57510.1	3.6e-06	32.85	unknown protein; Has 27 Blast hits to 27 proteins in 9 species: Archae - 0; Bact...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 80..110 e-value: 4.6E-10 score: 38.9
None	No IPR available	PANTHER	PTHR33098:SF64	OS08G0448100 PROTEIN	coord: 6..119
None	No IPR available	PANTHER	PTHR33098	COTTON FIBER (DUF761)	coord: 6..119

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G00980.1	CSPI03G00980.1	mRNA