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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGTCTAAGATTGGAGGAGATGGAGGAGATGTTGAAGGAAATGGAGGAGATTTGAGATCAAAGGAGACGGAGGAACTAAGATCTGAGATCGGCCTAACAGAGGAGAGACAGAGGAGATGTCGGAGGAGAGACTACAAAGACGAAGGAGGAGTGAGGGAGCTAAGACGAAGGAAACATCGAAGACGTTGCAGTGTGCAAGGGAAAGCCAGAGGTGAATTGCATGACAACGTGAGGATAAGATTTTTGTGTGACAACATGTGA mRNA sequence ATGTCTAAGATTGGAGGAGATGGAGGAGATGTTGAAGGAAATGGAGGAGATTTGAGATCAAAGGAGACGGAGGAACTAAGATCTGAGATCGGCCTAACAGAGGAGAGACAGAGGAGATGTCGGAGGAGAGACTACAAAGACGAAGGAGGAGTGAGGGAGCTAAGACGAAGGAAACATCGAAGACGTTGCAGTGTGCAAGGGAAAGCCAGAGGTGAATTGCATGACAACGTGAGGATAAGATTTTTGTGTGACAACATGTGA Coding sequence (CDS) ATGTCTAAGATTGGAGGAGATGGAGGAGATGTTGAAGGAAATGGAGGAGATTTGAGATCAAAGGAGACGGAGGAACTAAGATCTGAGATCGGCCTAACAGAGGAGAGACAGAGGAGATGTCGGAGGAGAGACTACAAAGACGAAGGAGGAGTGAGGGAGCTAAGACGAAGGAAACATCGAAGACGTTGCAGTGTGCAAGGGAAAGCCAGAGGTGAATTGCATGACAACGTGAGGATAAGATTTTTGTGTGACAACATGTGA Protein sequence MSKIGGDGGDVEGNGGDLRSKETEELRSEIGLTEERQRRCRRRDYKDEGGVRELRRRKHRRRCSVQGKARGELHDNVRIRFLCDNM*
Homology
BLAST of CSPI02G25970 vs. ExPASy TrEMBL
Match: A0A0A0KDV4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G038520 PE=4 SV=1) HSP 1 Score: 59.7 bits (143), Expect = 7.0e-06 Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 0
Query: 32 LTEERQRRCRRRDYKDEGGVRELRRRKHRRRCSVQGKARGELHDNVRI 80
+ EER+R+C+RRD +DEGG RELRRR+ RR C +GKA GEL D VRI
Sbjct: 1 MKEERRRQCQRRDKEDEGGERELRRRRRRRCCGAKGKADGELRDGVRI 48
BLAST of CSPI02G25970 vs. NCBI nr
Match: KAE8652272.1 (hypothetical protein Csa_023982, partial [Cucumis sativus]) HSP 1 Score: 148.7 bits (374), Expect = 2.4e-32 Identity = 76/80 (95.00%), Postives = 77/80 (96.25%), Query Frame = 0
Query: 7 DGGDVEGNGGDLRSKETEELRSEIGLTEERQRRCRRRDYKDEGGVRELRRRKHRRRCSVQ 66
DGGDVEGNGGDLRS ETEELRSEIGLTEERQRRC RRDYKDEGGVRELRRRKHRRRCSVQ
Sbjct: 1 DGGDVEGNGGDLRSNETEELRSEIGLTEERQRRCGRRDYKDEGGVRELRRRKHRRRCSVQ 60
Query: 67 GKARGELHDNVRIRFLCDNM 87
GKARGELHDNVRIRF CDN+
Sbjct: 61 GKARGELHDNVRIRFSCDNV 80
BLAST of CSPI02G25970 vs. NCBI nr
Match: KGN45956.1 (hypothetical protein Csa_005118 [Cucumis sativus]) HSP 1 Score: 59.7 bits (143), Expect = 1.5e-05 Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 0
Query: 32 LTEERQRRCRRRDYKDEGGVRELRRRKHRRRCSVQGKARGELHDNVRI 80
+ EER+R+C+RRD +DEGG RELRRR+ RR C +GKA GEL D VRI
Sbjct: 1 MKEERRRQCQRRDKEDEGGERELRRRRRRRCCGAKGKADGELRDGVRI 48
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KDV4 | 7.0e-06 | 64.58 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G038520 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAE8652272.1 | 2.4e-32 | 95.00 | hypothetical protein Csa_023982, partial [Cucumis sativus] | [more] |
| KGN45956.1 | 1.5e-05 | 64.58 | hypothetical protein Csa_005118 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..30 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 14..30 |
Relationships
The following mRNA feature(s) are a part of this gene:
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