CSPI02G18850 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI02G18850
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr2: 17284532 .. 17284906 (+)
RNA-Seq ExpressionCSPI02G18850
SyntenyCSPI02G18850
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTCGATCGGAAATTTTGGTAAAAGAAAGGTACAGGCATGCATCAATCCCAGGTAAATATTGAACGTTACTGTTGTTCTTGATTGTCCAGTTTTTAAATCTCTTGTGCTAATTAATAATATAGGACTCTCTGTGTTTGTGAAGGCCGTGTCGTCCAAGAAAATAAATGAAGAAGAAGGAGCCATTGAAACCAAGGTTGTTAAGCAGCAGATGGAGCCCCCAAATGAAGGCACCACGGTGGTTCATTTAACTCGAAAACAACCTACCCATGGCGGGAGTGGAGTTTTGGGGAGTGCAGCCACTGCTGTGGGTAACGCCCTTCGTTCTGCCAAGGATGCCGTTTTTGGGAAAGGGAAAGGCACCAACCATGGTTGA

mRNA sequence

GTTTCGATCGGAAATTTTGGTAAAAGAAAGGTACAGGCATGCATCAATCCCAGGCCGTGTCGTCCAAGAAAATAAATGAAGAAGAAGGAGCCATTGAAACCAAGGTTGTTAAGCAGCAGATGGAGCCCCCAAATGAAGGCACCACGGTGGTTCATTTAACTCGAAAACAACCTACCCATGGCGGGAGTGGAGTTTTGGGGAGTGCAGCCACTGCTGTGGGTAACGCCCTTCGTTCTGCCAAGGATGCCGTTTTTGGGAAAGGGAAAGGCACCAACCATGGTTGA

Coding sequence (CDS)

ATGCATCAATCCCAGGCCGTGTCGTCCAAGAAAATAAATGAAGAAGAAGGAGCCATTGAAACCAAGGTTGTTAAGCAGCAGATGGAGCCCCCAAATGAAGGCACCACGGTGGTTCATTTAACTCGAAAACAACCTACCCATGGCGGGAGTGGAGTTTTGGGGAGTGCAGCCACTGCTGTGGGTAACGCCCTTCGTTCTGCCAAGGATGCCGTTTTTGGGAAAGGGAAAGGCACCAACCATGGTTGA

Protein sequence

MHQSQAVSSKKINEEEGAIETKVVKQQMEPPNEGTTVVHLTRKQPTHGGSGVLGSAATAVGNALRSAKDAVFGKGKGTNHG*
Homology
BLAST of CSPI02G18850 vs. ExPASy TrEMBL
Match: A0A0A0LR80 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G356060 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 1.1e-32
Identity = 77/80 (96.25%), Postives = 78/80 (97.50%), Query Frame = 0

Query: 2  HQSQAVSSKKINEEEGAIETKVVKQQMEPPNEGTTVVHLTRKQPTHGGSGVLGSAATAVG 61
          H  +AVSSKKINEEEGAIETKVVKQQMEPPNEGTTVVHLTRKQPTHGGSGVLGSAATAVG
Sbjct: 16 HPHKAVSSKKINEEEGAIETKVVKQQMEPPNEGTTVVHLTRKQPTHGGSGVLGSAATAVG 75

Query: 62 NALRSAKDAVFGKGKGTNHG 82
          NALRSAKDAVFGKGKGTNHG
Sbjct: 76 NALRSAKDAVFGKGKGTNHG 95

BLAST of CSPI02G18850 vs. ExPASy TrEMBL
Match: A0A5A7V0S3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G00570 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.7e-25
Identity = 71/83 (85.54%), Postives = 73/83 (87.95%), Query Frame = 0

Query: 1  MHQSQAVSSKKINEEEGAIETKVVKQQMEPPNEGTTVVHLTRKQPTHGGSGVLGSAATAV 60
          MHQSQ  SS+KINEEEGAI TKVVK QMEP NEGTTVVHLTRKQP  GGSGVLGSAA AV
Sbjct: 1  MHQSQEGSSEKINEEEGAIGTKVVK-QMEPTNEGTTVVHLTRKQPADGGSGVLGSAAAAV 60

Query: 61 GNALRSAKDAVF--GKGKGTNHG 82
          GNALRSAKDAVF  GKGKGT+HG
Sbjct: 61 GNALRSAKDAVFGKGKGKGTDHG 82

BLAST of CSPI02G18850 vs. ExPASy TrEMBL
Match: A0A067LC75 (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_16091 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.6e-04
Identity = 39/76 (51.32%), Postives = 47/76 (61.84%), Query Frame = 0

Query: 9  SKKINEEEGAIETKV-------VKQQMEPPNEGTTVVHLTR-KQPTHGGSGVLGSAATAV 68
          ++++N EEGAIETKV          Q EP  E   VVHLTR K+ +  G G+L   A AV
Sbjct: 6  TERVN-EEGAIETKVDTVDYRSSAAQEEPNKEKVGVVHLTRQKRDSGSGDGILARTAAAV 65

Query: 69 GNALRSAKDAVFGKGK 77
           N LRSAKDAV G+GK
Sbjct: 66 TNTLRSAKDAVVGRGK 80

BLAST of CSPI02G18850 vs. ExPASy TrEMBL
Match: A0A6A1W5Z9 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR3G019059 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 8.1e-04
Identity = 37/83 (44.58%), Postives = 52/83 (62.65%), Query Frame = 0

Query: 4   SQAVSSKKINEEEGAIETKV--------VKQQMEPPNEGTTVVHLTRKQ--PTHGGSGVL 63
           +++  ++++N E+GAIETKV          Q  EP  E  TVVHLTR +   + GGS + 
Sbjct: 94  NKSKGTEEVN-EQGAIETKVETQDHRSPAGQDKEPKTENVTVVHLTRDEGRSSVGGSAMA 153

Query: 64  GSAATAVGNALRSAKDAVFGKGK 77
           G+ ATA  N +RSAK+A+FG GK
Sbjct: 154 GT-ATAAANTIRSAKEAIFGGGK 174

BLAST of CSPI02G18850 vs. NCBI nr
Match: KAE8652073.1 (hypothetical protein Csa_018632 [Cucumis sativus])

HSP 1 Score: 156.4 bits (394), Expect = 1.1e-34
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0

Query: 1  MHQSQAVSSKKINEEEGAIETKVVKQQMEPPNEGTTVVHLTRKQPTHGGSGVLGSAATAV 60
          MHQSQAVSSKKINEEEGAIETKVVKQQMEPPNEGTTVVHLTRKQPTHGGSGVLGSAATAV
Sbjct: 1  MHQSQAVSSKKINEEEGAIETKVVKQQMEPPNEGTTVVHLTRKQPTHGGSGVLGSAATAV 60

Query: 61 GNALRSAKDAVFGKGKGTNHG 82
          GNALRSAKDAVFGKGKGTNHG
Sbjct: 61 GNALRSAKDAVFGKGKGTNHG 81

BLAST of CSPI02G18850 vs. NCBI nr
Match: KAA0060924.1 (hypothetical protein E6C27_scaffold501G00570 [Cucumis melo var. makuwa])

HSP 1 Score: 123.6 bits (309), Expect = 7.7e-25
Identity = 71/83 (85.54%), Postives = 73/83 (87.95%), Query Frame = 0

Query: 1  MHQSQAVSSKKINEEEGAIETKVVKQQMEPPNEGTTVVHLTRKQPTHGGSGVLGSAATAV 60
          MHQSQ  SS+KINEEEGAI TKVVK QMEP NEGTTVVHLTRKQP  GGSGVLGSAA AV
Sbjct: 1  MHQSQEGSSEKINEEEGAIGTKVVK-QMEPTNEGTTVVHLTRKQPADGGSGVLGSAAAAV 60

Query: 61 GNALRSAKDAVF--GKGKGTNHG 82
          GNALRSAKDAVF  GKGKGT+HG
Sbjct: 61 GNALRSAKDAVFGKGKGKGTDHG 82

BLAST of CSPI02G18850 vs. NCBI nr
Match: KAG6585682.1 (hypothetical protein SDJN03_18415, partial [Cucurbita argyrosperma subsp. sororia] >KAG7020595.1 hypothetical protein SDJN02_17281 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 81.3 bits (199), Expect = 4.4e-12
Identity = 57/88 (64.77%), Postives = 59/88 (67.05%), Query Frame = 0

Query: 1  MHQSQAVSSKKINEEEGAIETKVVK--------QQMEPPNEGTTVVHLTRKQPTHG-GSG 60
          MHQSQ   S+KIN EEGAIETKV          Q  EP NE TTVVHLTRKQ     G G
Sbjct: 1  MHQSQ--GSEKIN-EEGAIETKVETVDERSPPGQSEEPRNEKTTVVHLTRKQGDDSQGRG 60

Query: 61 VLGSAATAVGNALRSAKDAVFGKGKGTN 80
          VLGSAA AV N LRSAKDA+FGKGK  N
Sbjct: 61 VLGSAAAAVANTLRSAKDAIFGKGKERN 85

BLAST of CSPI02G18850 vs. NCBI nr
Match: KDP41684.1 (hypothetical protein JCGZ_16091 [Jatropha curcas])

HSP 1 Score: 55.1 bits (131), Expect = 3.4e-04
Identity = 39/76 (51.32%), Postives = 47/76 (61.84%), Query Frame = 0

Query: 9  SKKINEEEGAIETKV-------VKQQMEPPNEGTTVVHLTR-KQPTHGGSGVLGSAATAV 68
          ++++N EEGAIETKV          Q EP  E   VVHLTR K+ +  G G+L   A AV
Sbjct: 6  TERVN-EEGAIETKVDTVDYRSSAAQEEPNKEKVGVVHLTRQKRDSGSGDGILARTAAAV 65

Query: 69 GNALRSAKDAVFGKGK 77
           N LRSAKDAV G+GK
Sbjct: 66 TNTLRSAKDAVVGRGK 80

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LR801.1e-3296.25Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G356060 PE=4 SV=1[more]
A0A5A7V0S33.7e-2585.54Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A067LC751.6e-0451.32Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_16091 PE=4 SV=1[more]
A0A6A1W5Z98.1e-0444.58Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR3G019059 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAE8652073.11.1e-34100.00hypothetical protein Csa_018632 [Cucumis sativus][more]
KAA0060924.17.7e-2585.54hypothetical protein E6C27_scaffold501G00570 [Cucumis melo var. makuwa][more]
KAG6585682.14.4e-1264.77hypothetical protein SDJN03_18415, partial [Cucurbita argyrosperma subsp. sorori... [more]
KDP41684.13.4e-0451.32hypothetical protein JCGZ_16091 [Jatropha curcas][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..36

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G18850.1CSPI02G18850.1mRNA