CSPI02G15250 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G15250
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Root meristem growth factor 9-like protein
Location	Chr2: 14835700 .. 14836778 (+)
RNA-Seq Expression	CSPI02G15250
Synteny	CSPI02G15250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATGCTTCCATGCAAACGCATTCTTACACTCTTCGTCCTCATCCTCGTCCTTCTTTGTTGTTTCTCAAACCCAGCTATAGGTATAGACTTTTCTATCTAATGGTATCTTTTCTTTTTCTCTTCATTTTTATGTTTTAGGTTACGGGTTAAACAAAAAAACATGTTATCTAATTGATTAGGACAATAATTCATATCGATTTTTTTTTATTTACTTCTTCTCCCTAGTTTTGTTGAGTTTAAAAATTAGGTCATACTATCAAATTTTGAGTTATAATCATAAACTGAAATATATTTTACCTTATGTAAGATGAGAATTTTTAATTTTCTCATGGTACAACATCTTGATCAATTGTACATGCATGTATAAGGTTCATAGTATATATAATTTAGTTTTTTGATGTATTTTGAAAGGTTTGTGCCAAACATAGATACATTCAAACATGACAACATATATGTTTCATGATGCTTATTTGGTAAGTTTAATGAGACTATGGAAGTATCTCTTACCAAACGAGAAATATACATATTATATACAAATGCATTTGTTTAAGAAATTAAAATATTTACTTATTTTTATAATCTACTTCTATAAATAGTATTTCAAAAAGAAGTTTTTCTAACCAGAAAAAGAAAACAAAAAGAACAAGAAATAAAAGTTGTTTCTAGACATATTTTAAATGTTGTTTTGAATGAAGAATTTCGAATGACTTCAAAGTATGTCTGTCAATTGAATAAGTTCAATTCTATACGAAAAGCATCAAATAAAAAACTCATTCTACAAAGTTTTCCTCGATCTCTCTTTGGAAACCGAAATTTTATGTACAAGTTGAAGTTTGGACTGAGATTGTTACTGATGGGATTTCCTTAATTATTGATTTGTTTGTGATTGCAGCAGCAAGAAGTGTGGGAGTTGCTGAGATGAAAAATGAGAGTCAAAATGAGAAAGTAATTAACATGAATGATGATGCTTATAAAGTTCATAATAATGATGAAGAACATTATTTCTCAAGCACGGATGATTTGGGTGCAATGGATTATACTCCAGCTTCCAAGAAGCCTCCAATTCACAACTAG

mRNA sequence

ATGGCTATGCTTCCATGCAAACGCATTCTTACACTCTTCGTCCTCATCCTCGTCCTTCTTTGTTGTTTCTCAAACCCAGCTATAGCAGCAAGAAGTGTGGGAGTTGCTGAGATGAAAAATGAGAGTCAAAATGAGAAAGTAATTAACATGAATGATGATGCTTATAAAGTTCATAATAATGATGAAGAACATTATTTCTCAAGCACGGATGATTTGGGTGCAATGGATTATACTCCAGCTTCCAAGAAGCCTCCAATTCACAACTAG

Coding sequence (CDS)

ATGGCTATGCTTCCATGCAAACGCATTCTTACACTCTTCGTCCTCATCCTCGTCCTTCTTTGTTGTTTCTCAAACCCAGCTATAGCAGCAAGAAGTGTGGGAGTTGCTGAGATGAAAAATGAGAGTCAAAATGAGAAAGTAATTAACATGAATGATGATGCTTATAAAGTTCATAATAATGATGAAGAACATTATTTCTCAAGCACGGATGATTTGGGTGCAATGGATTATACTCCAGCTTCCAAGAAGCCTCCAATTCACAACTAG

Protein sequence

MAMLPCKRILTLFVLILVLLCCFSNPAIAARSVGVAEMKNESQNEKVINMNDDAYKVHNNDEEHYFSSTDDLGAMDYTPASKKPPIHN*

Homology

[Close]

BLAST of CSPI02G15250 vs. ExPASy TrEMBL
Match: A0A0A0LMV6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297260 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 3.4e-40
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MAMLPCKRILTLFVLILVLLCCFSNPAIAARSVGVAEMKNESQNEKVINMNDDAYKVHNN 60
          MAMLPCKRILTLFVLILVLLCCFSNPAIAARSVGVAEMKNESQNEKVINMNDDAYKVHNN
Sbjct: 1  MAMLPCKRILTLFVLILVLLCCFSNPAIAARSVGVAEMKNESQNEKVINMNDDAYKVHNN 60

Query: 61 DEEHYFSSTDDLGAMDYTPASKKPPIHN 89
          DEEHYFSSTDDLGAMDYTPASKKPPIHN
Sbjct: 61 DEEHYFSSTDDLGAMDYTPASKKPPIHN 88

[Close]

BLAST of CSPI02G15250 vs. ExPASy TrEMBL
Match: A0A5A7TWX6 (Root meristem growth factor 9-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold299G002040 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.7e-31
Identity = 79/90 (87.78%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 1  MAMLPCKRILTLFVLILVLLCCFSNPAIAARSVGVAEMKNE-SQNEKVINMNDDAYKVH- 60
          MAMLPCKRIL LF+LIL+LL CFSN AIAARSVGVAEMKNE SQ EKVIN+NDD  KVH 
Sbjct: 1  MAMLPCKRILILFLLILILLSCFSNTAIAARSVGVAEMKNEISQREKVININDDVNKVHN 60

Query: 61 NNDEEHYFSSTDDLGAMDYTPASKKPPIHN 89
          NNDEEHYFSSTDDLGAMDYTPASKKPPIHN
Sbjct: 61 NNDEEHYFSSTDDLGAMDYTPASKKPPIHN 90

[Close]

BLAST of CSPI02G15250 vs. ExPASy TrEMBL
Match: A0A6A1VC82 (Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR6G024140 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.4e-04
Identity = 37/87 (42.53%), Postives = 52/87 (59.77%), Query Frame = 0


Query: 2  AMLPCKRILTLFVLILVLLCCFSNPAIAARSVGVAEMKNESQNEKVINMNDDAYKVHNND 61
          A+LPCKR   L ++ LV+LC FSN A AARS+        SQ    ++ + D +   +  
Sbjct: 4  AVLPCKR---LVLIALVMLCFFSNAARAARSLRAVASNEISQ----MSHDQDPF---SPK 63

Query: 62 EEHYFSSTDDLGAMDYTPASKKPPIHN 89
          E+   + +DDL  +DYTPA +KPPIHN
Sbjct: 64 EDRVLADSDDLVTVDYTPARRKPPIHN 80

[Close]

BLAST of CSPI02G15250 vs. NCBI nr
Match: KGN62102.1 (hypothetical protein Csa_006036 [Cucumis sativus])

HSP 1 Score: 173.7 bits (439), Expect = 7.1e-40
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0


Query: 1  MAMLPCKRILTLFVLILVLLCCFSNPAIAARSVGVAEMKNESQNEKVINMNDDAYKVHNN 60
          MAMLPCKRILTLFVLILVLLCCFSNPAIAARSVGVAEMKNESQNEKVINMNDDAYKVHNN
Sbjct: 1  MAMLPCKRILTLFVLILVLLCCFSNPAIAARSVGVAEMKNESQNEKVINMNDDAYKVHNN 60

Query: 61 DEEHYFSSTDDLGAMDYTPASKKPPIHN 89
          DEEHYFSSTDDLGAMDYTPASKKPPIHN
Sbjct: 61 DEEHYFSSTDDLGAMDYTPASKKPPIHN 88

[Close]

BLAST of CSPI02G15250 vs. NCBI nr
Match: KAA0045905.1 (Root meristem growth factor 9 -like protein [Cucumis melo var. makuwa] >TYK13684.1 hypothetical protein E5676_scaffold299G002040 [Cucumis melo var. makuwa])

HSP 1 Score: 144.8 bits (364), Expect = 3.5e-31
Identity = 79/90 (87.78%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 1  MAMLPCKRILTLFVLILVLLCCFSNPAIAARSVGVAEMKNE-SQNEKVINMNDDAYKVH- 60
          MAMLPCKRIL LF+LIL+LL CFSN AIAARSVGVAEMKNE SQ EKVIN+NDD  KVH 
Sbjct: 1  MAMLPCKRILILFLLILILLSCFSNTAIAARSVGVAEMKNEISQREKVININDDVNKVHN 60

Query: 61 NNDEEHYFSSTDDLGAMDYTPASKKPPIHN 89
          NNDEEHYFSSTDDLGAMDYTPASKKPPIHN
Sbjct: 61 NNDEEHYFSSTDDLGAMDYTPASKKPPIHN 90

[Close]

BLAST of CSPI02G15250 vs. NCBI nr
Match: KAG6571377.1 (hypothetical protein SDJN03_30292, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 81.6 bits (200), Expect = 3.7e-12
Identity = 49/82 (59.76%), Postives = 57/82 (69.51%), Query Frame = 0


Query: 7  KRILTLFVLILVLLCCFSNPAIAARSVGVAEMKNESQNEKVINMNDDAYKVHNNDEEHYF 66
          KR+L   VL+LVLLC FSN  IA RS+GV ++K +    K     +D   VH   EE +F
Sbjct: 5  KRVL---VLVLVLLCSFSNKVIATRSLGVPQIKKDDHKLK----GNDDLAVH---EEEHF 64

Query: 67 SSTDDLGAMDYTPASKKPPIHN 89
          SSTDDLGAMDYTPASKKPPIHN
Sbjct: 65 SSTDDLGAMDYTPASKKPPIHN 76

[Close]

BLAST of CSPI02G15250 vs. NCBI nr
Match: KAG6605281.1 (hypothetical protein SDJN03_02598, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.8 bits (177), Expect = 1.7e-09
Identity = 47/88 (53.41%), Postives = 60/88 (68.18%), Query Frame = 0


Query: 3  MLPCKRILTLFVLILVLLCCFSNPAIAARS--VGVAEMKNESQNEKVINMNDDAYKVHNN 62
          M PCKR++ + +++LVLL CFSN AI ARS  VGV ++K +  + KV   + D     N 
Sbjct: 1  MAPCKRLVLVLLVLLVLLRCFSNTAIEARSLGVGVPQIKKDDHSLKV---DGDL----NV 60

Query: 63 DEEHYFSSTDDLGAMDYTPASKKPPIHN 89
          D+E +F ST DL AMDYT ASKKPPIHN
Sbjct: 61 DDEEHFMSTVDLVAMDYTQASKKPPIHN 81

[Close]

BLAST of CSPI02G15250 vs. NCBI nr
Match: KAB1210353.1 (hypothetical protein CJ030_MR6G024140 [Morella rubra])

HSP 1 Score: 55.5 bits (132), Expect = 2.8e-04
Identity = 37/87 (42.53%), Postives = 52/87 (59.77%), Query Frame = 0


Query: 2  AMLPCKRILTLFVLILVLLCCFSNPAIAARSVGVAEMKNESQNEKVINMNDDAYKVHNND 61
          A+LPCKR   L ++ LV+LC FSN A AARS+        SQ    ++ + D +   +  
Sbjct: 4  AVLPCKR---LVLIALVMLCFFSNAARAARSLRAVASNEISQ----MSHDQDPF---SPK 63

Query: 62 EEHYFSSTDDLGAMDYTPASKKPPIHN 89
          E+   + +DDL  +DYTPA +KPPIHN
Sbjct: 64 EDRVLADSDDLVTVDYTPARRKPPIHN 80

The following BLAST results are available for this feature:

BLAST of CSPI02G15250 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI02G15250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMV6	3.4e-40	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G297260 PE=4 SV=1	[more]
A0A5A7TWX6	1.7e-31	87.78	Root meristem growth factor 9-like protein OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A6A1VC82	1.4e-04	42.53	Uncharacterized protein OS=Morella rubra OX=262757 GN=CJ030_MR6G024140 PE=4 SV=1	[more]

BLAST of CSPI02G15250 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN62102.1	7.1e-40	100.00	hypothetical protein Csa_006036 [Cucumis sativus]	[more]
KAA0045905.1	3.5e-31	87.78	Root meristem growth factor 9 -like protein [Cucumis melo var. makuwa] >TYK13684...	[more]
KAG6571377.1	3.7e-12	59.76	hypothetical protein SDJN03_30292, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6605281.1	1.7e-09	53.41	hypothetical protein SDJN03_02598, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAB1210353.1	2.8e-04	42.53	hypothetical protein CJ030_MR6G024140 [Morella rubra]	[more]

BLAST of CSPI02G15250 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..88
None	No IPR available	PANTHER	PTHR33743:SF16	ROOT MERISTEM GROWTH FACTOR 9	coord: 1..88
IPR039337	Protein GOLVEN 2	PANTHER	PTHR33743	FAMILY NOT NAMED	coord: 1..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G15250.1	CSPI02G15250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007165	signal transduction
molecular_function	GO:0008083	growth factor activity