CSPI02G13420 (gene) Cucumber (PI 183967) v1

Overview
NameCSPI02G13420
Typegene
OrganismCucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
DescriptionUnknown protein
LocationChr2: 13446917 .. 13447312 (+)
RNA-Seq ExpressionCSPI02G13420
SyntenyCSPI02G13420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCAGTCGAAGAAGCCATGGTCGATTACAGAGACACTAGATGGAAGCAAAGAATTGGGTCTAAAGTTGGATGCTGCAGAGATGTTATTTGAATCCTCATTTCTTCTTAACTATTTTCCAGAACATAGTGGGAAAGCAAAAATCACCATGTTTGACGTGGTTTCAGAGAAAAGTTTTAAAGCAACAATGGAAAGGAAAAGCACTTCAAACCAATTTTTGATTACGTGGAAAAAAGACTTGGTAAAAAACATAAACTATAAGAGTGGAGATGAAATTTTATTGTATTGGGAACCTCAAATCAAAAGTCTATGTTTTGAGATTGTAAGGTGTTCCGCTCTTAGAACTTATCCACAAATGTCCGGTCAGTACCATTCGTATAATTATCGTTCCTAG

mRNA sequence

ATGGAGCAGTCGAAGAAGCCATGGTCGATTACAGAGACACTAGATGGAAGCAAAGAATTGGGTCTAAAGTTGGATGCTGCAGAGATGTTATTTGAATCCTCATTTCTTCTTAACTATTTTCCAGAACATAGTGGGAAAGCAAAAATCACCATGTTTGACGTGGTTTCAGAGAAAAGTTTTAAAGCAACAATGGAAAGGAAAAGCACTTCAAACCAATTTTTGATTACGTGGAAAAAAGACTTGGTAAAAAACATAAACTATAAGAGTGGAGATGAAATTTTATTGTATTGGGAACCTCAAATCAAAAGTCTATGTTTTGAGATTGTAAGGTGTTCCGCTCTTAGAACTTATCCACAAATGTCCGGTCAGTACCATTCGTATAATTATCGTTCCTAG

Coding sequence (CDS)

ATGGAGCAGTCGAAGAAGCCATGGTCGATTACAGAGACACTAGATGGAAGCAAAGAATTGGGTCTAAAGTTGGATGCTGCAGAGATGTTATTTGAATCCTCATTTCTTCTTAACTATTTTCCAGAACATAGTGGGAAAGCAAAAATCACCATGTTTGACGTGGTTTCAGAGAAAAGTTTTAAAGCAACAATGGAAAGGAAAAGCACTTCAAACCAATTTTTGATTACGTGGAAAAAAGACTTGGTAAAAAACATAAACTATAAGAGTGGAGATGAAATTTTATTGTATTGGGAACCTCAAATCAAAAGTCTATGTTTTGAGATTGTAAGGTGTTCCGCTCTTAGAACTTATCCACAAATGTCCGGTCAGTACCATTCGTATAATTATCGTTCCTAG

Protein sequence

MEQSKKPWSITETLDGSKELGLKLDAAEMLFESSFLLNYFPEHSGKAKITMFDVVSEKSFKATMERKSTSNQFLITWKKDLVKNINYKSGDEILLYWEPQIKSLCFEIVRCSALRTYPQMSGQYHSYNYRS*
Homology
[Close]
BLAST of CSPI02G13420 vs. ExPASy TrEMBL
Match: A0A0A0LD04 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G401960 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.4e-66
Identity = 128/131 (97.71%), Postives = 128/131 (97.71%), Query Frame = 0 

Query: 1   MEQSKKPWSITETLDGSKELGLKLDAAEMLFESSFLLNYFPEHSGKAKITMFDVVSEKSF 60
           MEQSKKPWSITETLDGSKELGLKLDAAEMLFESSFLLNYFPE SGKAKITMFDVVSEKSF
Sbjct: 1   MEQSKKPWSITETLDGSKELGLKLDAAEMLFESSFLLNYFPEQSGKAKITMFDVVSEKSF 60

Query: 61  KATMERKSTSNQFLITWKKDLVKNINYKSGDEILLYWEPQIKSLCFEIVRCSALRTYPQM 120
           KATMERKS SNQFLITWKKD VKNINYKSGDEILLYWEPQIKSLCFEIVRCSALRTYPQM
Sbjct: 61  KATMERKSASNQFLITWKKDFVKNINYKSGDEILLYWEPQIKSLCFEIVRCSALRTYPQM 120

Query: 121 SGQYHSYNYRS 132
           SGQYHSYNYRS
Sbjct: 121 SGQYHSYNYRS 131

[Close]
BLAST of CSPI02G13420 vs. ExPASy TrEMBL
Match: A0A0A0LJ50 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G270130 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.1e-63
Identity = 123/131 (93.89%), Postives = 125/131 (95.42%), Query Frame = 0 

Query: 1   MEQSKKPWSITETLDGSKELGLKLDAAEMLFESSFLLNYFPEHSGKAKITMFDVVSEKSF 60
           MEQ KKPWSITETLDGSKELGLKLDAAEMLFESSFLLNYFPE SGKAKITMFDVVSEKSF
Sbjct: 1   MEQPKKPWSITETLDGSKELGLKLDAAEMLFESSFLLNYFPEQSGKAKITMFDVVSEKSF 60

Query: 61  KATMERKSTSNQFLITWKKDLVKNINYKSGDEILLYWEPQIKSLCFEIVRCSALRTYPQM 120
           KATMERKS SNQFLITWKKD VKNINYK+GDEILLYWEPQIKSLCFEIV+CSALRTYPQM
Sbjct: 61  KATMERKSASNQFLITWKKDFVKNINYKNGDEILLYWEPQIKSLCFEIVKCSALRTYPQM 120

Query: 121 SGQYHSYNYRS 132
           SGQY SYNY S
Sbjct: 121 SGQYRSYNYSS 131

[Close]
BLAST of CSPI02G13420 vs. NCBI nr
Match: KAE8651895.1 (hypothetical protein Csa_006112 [Cucumis sativus])

HSP 1 Score: 261.9 bits (668), Expect = 2.9e-66
Identity = 128/131 (97.71%), Postives = 128/131 (97.71%), Query Frame = 0 

Query: 1   MEQSKKPWSITETLDGSKELGLKLDAAEMLFESSFLLNYFPEHSGKAKITMFDVVSEKSF 60
           MEQSKKPWSITETLDGSKELGLKLDAAEMLFESSFLLNYFPE SGKAKITMFDVVSEKSF
Sbjct: 1   MEQSKKPWSITETLDGSKELGLKLDAAEMLFESSFLLNYFPEQSGKAKITMFDVVSEKSF 60

Query: 61  KATMERKSTSNQFLITWKKDLVKNINYKSGDEILLYWEPQIKSLCFEIVRCSALRTYPQM 120
           KATMERKS SNQFLITWKKD VKNINYKSGDEILLYWEPQIKSLCFEIVRCSALRTYPQM
Sbjct: 61  KATMERKSASNQFLITWKKDFVKNINYKSGDEILLYWEPQIKSLCFEIVRCSALRTYPQM 120

Query: 121 SGQYHSYNYRS 132
           SGQYHSYNYRS
Sbjct: 121 SGQYHSYNYRS 131

[Close]
BLAST of CSPI02G13420 vs. NCBI nr
Match: KAE8651896.1 (hypothetical protein Csa_006487 [Cucumis sativus])

HSP 1 Score: 251.1 bits (640), Expect = 5.2e-63
Identity = 122/131 (93.13%), Postives = 125/131 (95.42%), Query Frame = 0 

Query: 1   MEQSKKPWSITETLDGSKELGLKLDAAEMLFESSFLLNYFPEHSGKAKITMFDVVSEKSF 60
           MEQ KKPWSITETLDGSKELGLKLDAAEMLFESSFLLNYFPE +GKAKITMFDVVSEKSF
Sbjct: 1   MEQPKKPWSITETLDGSKELGLKLDAAEMLFESSFLLNYFPEQTGKAKITMFDVVSEKSF 60

Query: 61  KATMERKSTSNQFLITWKKDLVKNINYKSGDEILLYWEPQIKSLCFEIVRCSALRTYPQM 120
           KATMERKS SNQFLITWKKD VKNINYK+GDEILLYWEPQIKSLCFEIV+CSALRTYPQM
Sbjct: 61  KATMERKSASNQFLITWKKDFVKNINYKNGDEILLYWEPQIKSLCFEIVKCSALRTYPQM 120

Query: 121 SGQYHSYNYRS 132
           SGQY SYNY S
Sbjct: 121 SGQYRSYNYSS 131

The following BLAST results are available for this feature:
BLAST of CSPI02G13420 vs.
Match NameE-valueIdentityDescription
BLAST of CSPI02G13420 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LD041.4e-6697.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G401960 PE=4 SV=1[more]
A0A0A0LJ501.1e-6393.89Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G270130 PE=4 SV=1[more]
BLAST of CSPI02G13420 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8651895.12.9e-6697.71hypothetical protein Csa_006112 [Cucumis sativus][more]
KAE8651896.15.2e-6393.13hypothetical protein Csa_006487 [Cucumis sativus][more]
BLAST of CSPI02G13420 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015300DNA-binding pseudobarrel domain superfamilyGENE3D2.40.330.10coord: 19..124
e-value: 4.3E-6
score: 28.6

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI02G13420.1CSPI02G13420.1mRNA