CSPI02G11060 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G11060
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Ty1-copia retrotransposon protein
Location	Chr2: 11298333 .. 11299541 (+)
RNA-Seq Expression	CSPI02G11060
Synteny	CSPI02G11060

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTAAAAATTGCATTTCTAAATGGTGATTTAGGAGAAGAAATCTATATGGCTCAACCAGAAGGATTCAAATTTTCTGGCCAAGAAAACAAAGTATGCAAACTTAAAAAATCTCTTTATGGTCTTATGTAGGCTCCTAAGCAATGGTATGAAAAATTTAATGACACTTTGATAAACAATGGATTTAAGGTAAATTCCTCAGACACATGTGTTTATTCAAAGATGTCTGGAGCTGAGTGCATACTAATATGTCTATATGTCGATGACATGTTGATCTTTGGAACAAATTTGGATTTAATAAAGGACACCAAGTTGTTCCTGTCATCACACTTTGAAATGAAAGACCTAGGTGAAGCAGACATAATTCTTGGAGTTAAAATTGAGAAAAATGAAAATGATTTATCTTTATCTCAATCTCATTATAATGAGATTTTACTAAAGAAATTTGACTCATTCGATGTCTCTCTGGTGAGAACTCCCTATGATGTTAGTAAATACCTTAAAAAGAACAAAGGAGAGAGTGTATCTAAACCTAAATATGCTAAGATCATAGGTCGTGTTATGTACTTAATGAACCACACTAGACCAAATATTGCATATGCTGTAAGTAGATTGAGTAGATATACACATAATCCTAGTAGATACCACTGGGATGCCTTACGTCATCTGTTGAGATGTCTTAAAGGAACTATAAACTACAGTTTGCACTTCAATAAGTTTCCTTCTGTATTAGAAGGATATTGTGATGCAAATTGGGTTACAGATAACGATGAGGTAAACTCTACCAATGGATACGTATTTTAGCTCGGGGGAGGAGCATCTAGGAAGTCTGCTAAATAGACTTGCATAGCCAAATCCATTATGGAATCTGAGTTTATAGCATTAGAACTGGCAAGATAAGTGGCAGAGTGGATTAAAAGTCTACTAGGAGATGTACCATTGTGGGGGACATCTGTGCATGTGTTCGTACATTGTGATTCACAGGCAGCCATAAGTATCGCCAAGAACAGTGTTTATAATGGGAAGAGAAGACACATACGTCTTAGACATGGAGTCGTGAAACACTTACTGAAGGAAAGAACTATTTTCTTAGAATTTGTTCGATCTGAGAAAAACCTGGTTGATCTTTTAACCAAAGGACTGTCTAGAAAAATGGTTTTAGATTCCTCAATAAACATGGGACTAAAGCCCTTCGGAGATCCATAA

mRNA sequence

ATGGATGTAAAAATTGCATTTCTAAATGGTGATTTAGGAGAAGAAATCTATATGGCTCAACCAGAAGGATTCAAATTTTCTGGCCAAGAAAACAAAGCTCCTAAGCAATGGTATGAAAAATTTAATGACACTTTGATAAACAATGGATTTAAGGTAAATTCCTCAGACACATGTGTTTATTCAAAGATGTCTGGAGCTGAGTGCATACTAATATGTCTATATGTCGATGACATGTTGATCTTTGGAACAAATTTGGATTTAATAAAGGACACCAAGTTGTTCCTGTCATCACACTTTGAAATGAAAGACCTAGGTGAAGCAGACATAATTCTTGGAGTTAAAATTGAGAAAAATGAAAATGATTTATCTTTATCTCAATCTCATTATAATGAGATTTTACTAAAGAAATTTGACTCATTCGATGTCTCTCTGGTGAGAACTCCCTATGATGTTAGTAAATACCTTAAAAAGAACAAAGGAGAGAGTGTATCTAAACCTAAATATGCTAAGATCATAGGTCGTGTTATGTACTTAATGAACCACACTAGACCAAATATTGCATATGCTGTAAGTAGATTGAGTAGATATACACATAATCCTAGTAGATACCACTGGGATGCCTTACGTCATCTGTTGAGATGTCTTAAAGGAACTATAAACTACAGTTTGCACTTCAATAAGTTTCCTTCTGTATTAGAAGGATATTGTGATGCAAATTGGGTTACAGATAACGATGAGGCAGCCATAAGTATCGCCAAGAACAGTGTTTATAATGGGAAGAGAAGACACATACGTCTTAGACATGGAGTCGTGAAACACTTACTGAAGGAAAGAACTATTTTCTTAGAATTTGTTCGATCTGAGAAAAACCTGGTTGATCTTTTAACCAAAGGACTGTCTAGAAAAATGGTTTTAGATTCCTCAATAAACATGGGACTAAAGCCCTTCGGAGATCCATAA

Coding sequence (CDS)

ATGGATGTAAAAATTGCATTTCTAAATGGTGATTTAGGAGAAGAAATCTATATGGCTCAACCAGAAGGATTCAAATTTTCTGGCCAAGAAAACAAAGCTCCTAAGCAATGGTATGAAAAATTTAATGACACTTTGATAAACAATGGATTTAAGGTAAATTCCTCAGACACATGTGTTTATTCAAAGATGTCTGGAGCTGAGTGCATACTAATATGTCTATATGTCGATGACATGTTGATCTTTGGAACAAATTTGGATTTAATAAAGGACACCAAGTTGTTCCTGTCATCACACTTTGAAATGAAAGACCTAGGTGAAGCAGACATAATTCTTGGAGTTAAAATTGAGAAAAATGAAAATGATTTATCTTTATCTCAATCTCATTATAATGAGATTTTACTAAAGAAATTTGACTCATTCGATGTCTCTCTGGTGAGAACTCCCTATGATGTTAGTAAATACCTTAAAAAGAACAAAGGAGAGAGTGTATCTAAACCTAAATATGCTAAGATCATAGGTCGTGTTATGTACTTAATGAACCACACTAGACCAAATATTGCATATGCTGTAAGTAGATTGAGTAGATATACACATAATCCTAGTAGATACCACTGGGATGCCTTACGTCATCTGTTGAGATGTCTTAAAGGAACTATAAACTACAGTTTGCACTTCAATAAGTTTCCTTCTGTATTAGAAGGATATTGTGATGCAAATTGGGTTACAGATAACGATGAGGCAGCCATAAGTATCGCCAAGAACAGTGTTTATAATGGGAAGAGAAGACACATACGTCTTAGACATGGAGTCGTGAAACACTTACTGAAGGAAAGAACTATTTTCTTAGAATTTGTTCGATCTGAGAAAAACCTGGTTGATCTTTTAACCAAAGGACTGTCTAGAAAAATGGTTTTAGATTCCTCAATAAACATGGGACTAAAGCCCTTCGGAGATCCATAA

Protein sequence

MDVKIAFLNGDLGEEIYMAQPEGFKFSGQENKAPKQWYEKFNDTLINNGFKVNSSDTCVYSKMSGAECILICLYVDDMLIFGTNLDLIKDTKLFLSSHFEMKDLGEADIILGVKIEKNENDLSLSQSHYNEILLKKFDSFDVSLVRTPYDVSKYLKKNKGESVSKPKYAKIIGRVMYLMNHTRPNIAYAVSRLSRYTHNPSRYHWDALRHLLRCLKGTINYSLHFNKFPSVLEGYCDANWVTDNDEAAISIAKNSVYNGKRRHIRLRHGVVKHLLKERTIFLEFVRSEKNLVDLLTKGLSRKMVLDSSINMGLKPFGDP*

Homology

[Close]

BLAST of CSPI02G11060 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 3.0e-43
Identity = 112/284 (39.44%), Postives = 161/284 (56.69%), Query Frame = 0


Query: 1    MDVKIAFLNGDLGEEIYMAQPEGFKFSGQEN-------------KAPKQWYEKFNDTLIN 60
            +DVK AFL+GDL EEIYM QPEGF+ +G+++             +AP+QWY KF+  + +
Sbjct: 921  LDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKS 980

Query: 61   NGFKVNSSDTCVYSK-MSGAECILICLYVDDMLIFGTNLDLIKDTKLFLSSHFEMKDLGE 120
              +    SD CVY K  S    I++ LYVDDMLI G +  LI   K  LS  F+MKDLG 
Sbjct: 981  QTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGP 1040

Query: 121  ADIILGVKI--EKNENDLSLSQSHYNEILLKKFDSFDVSLVRTPYDVSKYLKKNK----- 180
            A  ILG+KI  E+    L LSQ  Y E +L++F+  +   V TP  ++ +LK +K     
Sbjct: 1041 AQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTP--LAGHLKLSKKMCPT 1100

Query: 181  ----GESVSKPKYAKIIGRVMYLMNHTRPNIAYAVSRLSRYTHNPSRYHWDALRHLLRCL 240
                  +++K  Y+  +G +MY M  TRP+IA+AV  +SR+  NP + HW+A++ +LR L
Sbjct: 1101 TVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYL 1160

Query: 241  KGTINYSLHFNKFPSVLEGYCDANWVTDNDEAAISIAKNSVYNG 260
            +GT    L F     +L+GY DA+   D D    S      ++G
Sbjct: 1161 RGTTGDCLCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSG 1202

[Close]

BLAST of CSPI02G11060 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 4.4e-34
Identity = 90/261 (34.48%), Postives = 138/261 (52.87%), Query Frame = 0


Query: 1    MDVKIAFLNGDLGEEIYMAQPEGFKFSGQEN-------------KAPKQWYEKFNDTLIN 60
            +DV  AFL G L +E+YM+QP GF    + +             +AP+ WY +    L+ 
Sbjct: 1047 LDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLT 1106

Query: 61   NGFKVNSSDTCVYSKMSGAECILICLYVDDMLIFGTNLDLIKDTKLFLSSHFEMKDLGEA 120
             GF  + SDT ++    G   I + +YVDD+LI G +  L+K T   LS  F +K+  + 
Sbjct: 1107 VGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDL 1166

Query: 121  DIILGVKIEKNENDLSLSQSHYNEILLKKFDSFDVSLVRTPYDVSKYLKKNKGESVSKP- 180
               LG++ ++    L LSQ  Y   LL + +      V TP   S  L  + G  +  P 
Sbjct: 1167 HYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPT 1226

Query: 181  KYAKIIGRVMYLMNHTRPNIAYAVSRLSRYTHNPSRYHWDALRHLLRCLKGTINYSLHFN 240
            +Y  I+G + YL   TRP+++YAV+RLS+Y H P+  HW+AL+ +LR L GT ++ +   
Sbjct: 1227 EYRGIVGSLQYLA-FTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLK 1286

Query: 241  KFPSV-LEGYCDANWVTDNDE 247
            K  ++ L  Y DA+W  D D+
Sbjct: 1287 KGNTLSLHAYSDADWAGDTDD 1306

[Close]

BLAST of CSPI02G11060 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.7e-33
Identity = 90/261 (34.48%), Postives = 137/261 (52.49%), Query Frame = 0


Query: 1    MDVKIAFLNGDLGEEIYMAQPEGFKFSGQEN-------------KAPKQWYEKFNDTLIN 60
            +DV  AFL G L +++YM+QP GF    + N             +AP+ WY +  + L+ 
Sbjct: 1064 LDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLT 1123

Query: 61   NGFKVNSSDTCVYSKMSGAECILICLYVDDMLIFGTNLDLIKDTKLFLSSHFEMKDLGEA 120
             GF  + SDT ++    G   + + +YVDD+LI G +  L+ +T   LS  F +KD  E 
Sbjct: 1124 IGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEEL 1183

Query: 121  DIILGVKIEKNENDLSLSQSHYNEILLKKFDSFDVSLVRTPYDVSKYLKKNKGESVSKP- 180
               LG++ ++    L LSQ  Y   LL + +      V TP   S  L    G  ++ P 
Sbjct: 1184 HYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPT 1243

Query: 181  KYAKIIGRVMYLMNHTRPNIAYAVSRLSRYTHNPSRYHWDALRHLLRCLKGTINYSLHFN 240
            +Y  I+G + YL   TRP+I+YAV+RLS++ H P+  H  AL+ +LR L GT N+ +   
Sbjct: 1244 EYRGIVGSLQYLA-FTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLK 1303

Query: 241  KFPSV-LEGYCDANWVTDNDE 247
            K  ++ L  Y DA+W  D D+
Sbjct: 1304 KGNTLSLHAYSDADWAGDKDD 1323

[Close]

BLAST of CSPI02G11060 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 141.7 bits (356), Expect = 1.4e-32
Identity = 111/401 (27.68%), Postives = 174/401 (43.39%), Query Frame = 0


Query: 1    MDVKIAFLNGDLGEEIYMAQPEGFKFSGQE-----------NKAPKQWYEKFNDTLINNG 60
            MDVK AFLNG L EEIYM  P+G   +               +A + W+E F   L    
Sbjct: 1001 MDVKTAFLNGTLKEEIYMRLPQGISCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECE 1060

Query: 61   FKVNSSDTCVY--SKMSGAECILICLYVDDMLIFGTNLDLIKDTKLFLSSHFEMKDLGEA 120
            F  +S D C+Y   K +  E I + LYVDD++I   ++  + + K +L   F M DL E 
Sbjct: 1061 FVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLNEI 1120

Query: 121  DIILGVKIEKNENDLSLSQSHYNEILLKKFDSFDVSLVRTPYDVS-KYLKKNKGESVSKP 180
               +G++IE  E+ + LSQS Y + +L KF+  + + V TP      Y   N  E  + P
Sbjct: 1121 KHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSDEDCNTP 1180

Query: 181  KYAKIIGRVMYLMNHTRPNIAYAVSRLSRYTHNPSRYHWDALRHLLRCLKGTINYSLHFN 240
                +IG +MY+M  TRP++  AV+ LSRY+   +   W  L+ +LR LKGTI+  L F 
Sbjct: 1181 -CRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFK 1240

Query: 241  K---FPSVLEGYCDANW------------------------------------------- 300
            K   F + + GY D++W                                           
Sbjct: 1241 KNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYM 1300

Query: 301  ----------------------------VTDNDEAAISIAKNSVYNGKRRHIRLRHGVVK 314
                                        + ++++  ISIA N   + + +HI +++   +
Sbjct: 1301 ALFEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAR 1360

[Close]

BLAST of CSPI02G11060 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 109.8 bits (273), Expect = 5.9e-23
Identity = 80/255 (31.37%), Postives = 123/255 (48.24%), Query Frame = 0


Query: 1   MDVKIAFLNGDLGEEIYMAQPEGF-----------KFSGQE--NKAPKQWYEKFNDTLIN 60
           MDV  AFLN  + E IY+ QP GF            + G     +AP  W E  N+TL  
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 61  NGFKVNSSDTCVYSKMSGAECILICLYVDDMLIFGTNLDLIKDTKLFLSSHFEMKDLGEA 120
            GF  +  +  +Y + +    I I +YVDD+L+   +  +    K  L+  + MKDLG+ 
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 121 DIILGVKIEKNEN-DLSLSQSHYNEILLKKFDSFDVSLVRTPYDVSKYLKKNKGESVSK- 180
           D  LG+ I ++ N D++LS   Y      + +     L +TP   SK L +     +   
Sbjct: 121 DKFLGLNIHQSSNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDI 180

Query: 181 PKYAKIIGRVMYLMNHTRPNIAYAVSRLSRYTHNPSRYHWDALRHLLRCLKGTINYSLHF 240
             Y  I+G++++  N  RP+I+Y VS LSR+   P   H ++ R +LR L  T +  L +
Sbjct: 181 TPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKY 240

[Close]

BLAST of CSPI02G11060 vs. ExPASy TrEMBL
Match: A0A5D3C5T2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00500 PE=4 SV=1)

HSP 1 Score: 509.2 bits (1310), Expect = 1.2e-140
Identity = 268/403 (66.50%), Postives = 290/403 (71.96%), Query Frame = 0


Query: 1    MDVKIAFLNGDLGEEIYMAQPEGFKFSGQENK-------------APKQWYEKFNDTLIN 60
            MDVK AFLNG+L EEIYM QPEGFK SGQENK             APKQWYEKFN+TLI 
Sbjct: 944  MDVKTAFLNGNLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLIT 1003

Query: 61   NGFKVNSSDTCVYSKMSGAECILICLYVDDMLIFGTNLDLIKDTKLFLSSHFEMKDLGEA 120
            NGFK+NSSDTCVYSKM GA+CILICLYVDDMLIFGTN++LI DTK FLSSHFEMKDLGEA
Sbjct: 1004 NGFKINSSDTCVYSKMVGADCILICLYVDDMLIFGTNMELITDTKYFLSSHFEMKDLGEA 1063

Query: 121  DIILGVKIEKNENDLSLSQSHYNEILLKKFDSFDVSLVRTPYDVSKYLKKNKGESVSKPK 180
            D+ILGVKI KN+  LSL QSHY E +LKKFDSFDVS VRTP+D SK+LKKNKG+SVS+P+
Sbjct: 1064 DVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPE 1123

Query: 181  YAKIIGRVMYLMNHTRPNIAYAVSRLSRYTHNPSRYHWDALRHLLRCLKGTINYSLHFNK 240
            YAKIIG VMYLMN+TRP+IAYAVSRLSRYTHNP+RYHWDALRHLLR LKGTI+Y LHF K
Sbjct: 1124 YAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKK 1183

Query: 241  FPSVLEGYCDANWVTDNDE----------------------------------------- 300
            FP+VLEGYCDANWVTDNDE                                         
Sbjct: 1184 FPAVLEGYCDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELA 1243

Query: 301  ------------------------------AAISIAKNSVYNGKRRHIRLRHGVVKHLLK 320
                                          AAI  AKNSVYNGK RH+RLRH VVK LLK
Sbjct: 1244 GQEAEWIKNLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHVRLRHAVVKQLLK 1303

[Close]

BLAST of CSPI02G11060 vs. ExPASy TrEMBL
Match: A0A2N9EQT1 (Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS4851 PE=4 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 2.6e-106
Identity = 212/400 (53.00%), Postives = 257/400 (64.25%), Query Frame = 0


Query: 1   MDVKIAFLNGDLGEEIYMAQPEGFKFSGQENK-------------APKQWYEKFNDTLIN 60
           MDVK AFLNGDL EEIYM QPEGF   GQENK             APKQW+EKF+ TL++
Sbjct: 383 MDVKTAFLNGDLDEEIYMDQPEGFVVQGQENKVCKLRKSLYGLKQAPKQWHEKFDKTLVS 442

Query: 61  NGFKVNSSDTCVYSKMSGAECILICLYVDDMLIFGTNLDLIKDTKLFLSSHFEMKDLGEA 120
           NGF VN SD CVYSK SGA  ++ICLYVDDMLIFGT+++ +K+TK FLSS+F+MKDLGEA
Sbjct: 443 NGFAVNESDRCVYSKFSGASGVIICLYVDDMLIFGTDMNAVKNTKDFLSSNFDMKDLGEA 502

Query: 121 DIILGVKIEKNENDLSLSQSHYNEILLKKFDSFDVSLVRTPYDVSKYLKKNKGESVSKPK 180
           D+ILG++I +N   L+LSQSHY E +LKKF+ +D   VRTPYD S +LKKN G  VS+ +
Sbjct: 503 DLILGIRIIRNNEGLTLSQSHYIEKVLKKFNHYDYEPVRTPYDPSIHLKKNSGSPVSQSE 562

Query: 181 YAKIIGRVMYLMNHTRPNIAYAVSRLSRYTHNPSRYHWDALRHLLRCLKGTINYSLHFNK 240
           YAKIIG VM+LMN TRP+IAYAVSRLSRYTHNP+  HW+A+  LL+ LKGT+N  L +  
Sbjct: 563 YAKIIGSVMFLMNCTRPDIAYAVSRLSRYTHNPAHEHWNAITRLLKYLKGTMNLGLTYTG 622

Query: 241 FPSVLEGYCDANWVTDNDE----------------------------------------- 300
            P+VLEGYCDANW++DNDE                                         
Sbjct: 623 HPAVLEGYCDANWISDNDETNSTSGYVFTLGGGAISWKSSKQTCNARSTMESEFVALEKA 682

Query: 301 -------------------------------AAISIAKNSVYNGKRRHIRLRHGVVKHLL 316
                                          AAI+ AKN +YNGK+RHIRLRH +V+ L+
Sbjct: 683 GTEAEWLRNLLADIPLWDKPLPSIAMHCDSQAAIACAKNKIYNGKKRHIRLRHNIVRQLI 742

[Close]

BLAST of CSPI02G11060 vs. ExPASy TrEMBL
Match: A0A2N9H4B0 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37208 PE=4 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 2.6e-106
Identity = 212/400 (53.00%), Postives = 257/400 (64.25%), Query Frame = 0


Query: 1    MDVKIAFLNGDLGEEIYMAQPEGFKFSGQENK-------------APKQWYEKFNDTLIN 60
            MDVK AFLNGDL EEIYM QPEGF   GQENK             APKQW+EKF+ TL++
Sbjct: 893  MDVKTAFLNGDLDEEIYMDQPEGFVVQGQENKVCKLRKSLYGLKQAPKQWHEKFDKTLVS 952

Query: 61   NGFKVNSSDTCVYSKMSGAECILICLYVDDMLIFGTNLDLIKDTKLFLSSHFEMKDLGEA 120
            NGF VN SD CVYSK SGA  ++ICLYVDDMLIFGT+++ +K+TK FLSS+F+MKDLGEA
Sbjct: 953  NGFAVNESDRCVYSKFSGASGVIICLYVDDMLIFGTDMNAVKNTKDFLSSNFDMKDLGEA 1012

Query: 121  DIILGVKIEKNENDLSLSQSHYNEILLKKFDSFDVSLVRTPYDVSKYLKKNKGESVSKPK 180
            D+ILG++I +N   L+LSQSHY E +LKKF+ +D   VRTPYD S +LKKN G  VS+ +
Sbjct: 1013 DLILGIRIIRNNEGLTLSQSHYIEKVLKKFNHYDYEPVRTPYDPSIHLKKNSGSPVSQSE 1072

Query: 181  YAKIIGRVMYLMNHTRPNIAYAVSRLSRYTHNPSRYHWDALRHLLRCLKGTINYSLHFNK 240
            YAKIIG VM+LMN TRP+IAYAVSRLSRYTHNP+  HW+A+  LL+ LKGT+N  L +  
Sbjct: 1073 YAKIIGSVMFLMNCTRPDIAYAVSRLSRYTHNPAHEHWNAITRLLKYLKGTMNLGLTYTG 1132

Query: 241  FPSVLEGYCDANWVTDNDE----------------------------------------- 300
             P+VLEGYCDANW++DNDE                                         
Sbjct: 1133 HPAVLEGYCDANWISDNDETNSTSGYVFTLGGGAISWKSSKQTCNARSTMESEFVALEKA 1192

Query: 301  -------------------------------AAISIAKNSVYNGKRRHIRLRHGVVKHLL 316
                                           AAI+ AKN +YNGK+RHIRLRH +V+ L+
Sbjct: 1193 GTEAEWLRNLLADIPLWDKPLPSIAMHCDSQAAIACAKNKIYNGKKRHIRLRHNIVRQLI 1252

[Close]

BLAST of CSPI02G11060 vs. ExPASy TrEMBL
Match: A0A5N6PGV2 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_08640 PE=4 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 2.9e-105
Identity = 213/400 (53.25%), Postives = 253/400 (63.25%), Query Frame = 0


Query: 1   MDVKIAFLNGDLGEEIYMAQPEGFKFSGQENK-------------APKQWYEKFNDTLIN 60
           MDVK AFLNGDL EEIYM QPEGF  SG E+K             APK+WYEKF+ TL  
Sbjct: 295 MDVKTAFLNGDLDEEIYMLQPEGFVVSGLESKVCKLRKSLYGLKQAPKKWYEKFDRTLKQ 354

Query: 61  NGFKVNSSDTCVYSKMSGAECILICLYVDDMLIFGTNLDLIKDTKLFLSSHFEMKDLGEA 120
           +G+ VN+SD+CVYSK S    +LICLYVDDMLIFG ++  I  TK FLSS FEMKDLGEA
Sbjct: 355 DGYIVNNSDSCVYSKRSKTGYVLICLYVDDMLIFGADMHDINQTKAFLSSKFEMKDLGEA 414

Query: 121 DIILGVKIEKNENDLSLSQSHYNEILLKKFDSFDVSLVRTPYDVSKYLKKNKGESVSKPK 180
           D+ILGVKI++  N +SL QSHY E +LKKFD F+++ V+TPYD S  LKKN  ESVS+ +
Sbjct: 415 DVILGVKIKRTWNGISLCQSHYIEQMLKKFDCFELNPVKTPYDPSILLKKNNHESVSQSE 474

Query: 181 YAKIIGRVMYLMNHTRPNIAYAVSRLSRYTHNPSRYHWDALRHLLRCLKGTINYSLHFNK 240
           YAKIIG VM+LMN+TRP+IAY VSRLSRYTHNPS+ HW A+  L+R L+GT+   LH+NK
Sbjct: 475 YAKIIGSVMFLMNYTRPDIAYTVSRLSRYTHNPSKEHWSAIHRLMRYLRGTMELCLHYNK 534

Query: 241 FPSVLEGYCDANWVTDNDE----------------------------------------- 300
           FP+VLEGYCDANWVTDNDE                                         
Sbjct: 535 FPAVLEGYCDANWVTDNDEVSSTSGYVFIMGGGAISWKSSKQTCIARSTMESEFIALELA 594

Query: 301 -------------------------------AAISIAKNSVYNGKRRHIRLRHGVVKHLL 316
                                          AAIS+AKN VYNGK+RHIRLRH  VKH+L
Sbjct: 595 GQEAEWLRGLLSDIPQWGRNPLPIPLHCDSKAAISVAKNDVYNGKKRHIRLRHSSVKHML 654

[Close]

BLAST of CSPI02G11060 vs. ExPASy TrEMBL
Match: A0A151TB60 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_018881 PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 3.5e-95
Identity = 189/400 (47.25%), Postives = 251/400 (62.75%), Query Frame = 0


Query: 1    MDVKIAFLNGDLGEEIYMAQPEGFKFSGQENK-------------APKQWYEKFNDTLIN 60
            MDVK AFLNG+L EEIYM QPEG +  GQENK             APKQW+EKF+  L+N
Sbjct: 601  MDVKTAFLNGELEEEIYMTQPEGCEVPGQENKVCRLLKSLYGLKQAPKQWHEKFDQVLLN 660

Query: 61   NGFKVNSSDTCVYSKMSGAECILICLYVDDMLIFGTNLDLIKDTKLFLSSHFEMKDLGEA 120
            +GF  +S+D CVY+K    +C++ICLYVDDMLIFGT  D++  TK FL+S+F+MKD+GEA
Sbjct: 661  DGFSSSSADKCVYTKSMNDDCVIICLYVDDMLIFGTCDDIVFKTKSFLASNFDMKDMGEA 720

Query: 121  DIILGVKIEKNENDLSLSQSHYNEILLKKFDSFDVSLVRTPYDVSKYLKKNKGESVSKPK 180
             +ILGVK+ +  + + LSQ HY E LLKKFD +D   V TPYDV+  LK+NKG+S+++ +
Sbjct: 721  SVILGVKVVRKGDSILLSQGHYVERLLKKFDYYDCKSVTTPYDVNSQLKQNKGDSLAQSQ 780

Query: 181  YAKIIGRVMYLMNHTRPNIAYAVSRLSRYTHNPSRYHWDALRHLLRCLKGTINYSLHFNK 240
            YA+IIG +++LMN +RP+IAYAVSRLSRYTH P++ HW+AL  L+R L+GT++Y + ++ 
Sbjct: 781  YAQIIGSLLHLMNFSRPDIAYAVSRLSRYTHCPNQDHWEALARLMRYLRGTMDYGIEYSG 840

Query: 241  FPSVLEGYCDANWVTDNDE----------------------------------------- 300
            FP+VLEGY DANW++D+DE                                         
Sbjct: 841  FPAVLEGYSDANWISDSDETKSTSGYVFTLGGGAIAWRSVRQSIIARSTMESEFVALEMT 900

Query: 301  -------------------------------AAISIAKNSVYNGKRRHIRLRHGVVKHLL 316
                                           +AI+IAKN  YNGK RHI+LRH +VK LL
Sbjct: 901  STEAEWLRNFLANIPLGMKPTPSVSIHCDNQSAIAIAKNKSYNGKNRHIQLRHNIVKQLL 960

[Close]

BLAST of CSPI02G11060 vs. NCBI nr
Match: TYK06518.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 509.2 bits (1310), Expect = 2.5e-140
Identity = 268/403 (66.50%), Postives = 290/403 (71.96%), Query Frame = 0


Query: 1    MDVKIAFLNGDLGEEIYMAQPEGFKFSGQENK-------------APKQWYEKFNDTLIN 60
            MDVK AFLNG+L EEIYM QPEGFK SGQENK             APKQWYEKFN+TLI 
Sbjct: 944  MDVKTAFLNGNLEEEIYMTQPEGFKISGQENKVCKLRKSLYGLKQAPKQWYEKFNNTLIT 1003

Query: 61   NGFKVNSSDTCVYSKMSGAECILICLYVDDMLIFGTNLDLIKDTKLFLSSHFEMKDLGEA 120
            NGFK+NSSDTCVYSKM GA+CILICLYVDDMLIFGTN++LI DTK FLSSHFEMKDLGEA
Sbjct: 1004 NGFKINSSDTCVYSKMVGADCILICLYVDDMLIFGTNMELITDTKYFLSSHFEMKDLGEA 1063

Query: 121  DIILGVKIEKNENDLSLSQSHYNEILLKKFDSFDVSLVRTPYDVSKYLKKNKGESVSKPK 180
            D+ILGVKI KN+  LSL QSHY E +LKKFDSFDVS VRTP+D SK+LKKNKG+SVS+P+
Sbjct: 1064 DVILGVKIRKNKTSLSLCQSHYVEKILKKFDSFDVSPVRTPFDASKHLKKNKGDSVSQPE 1123

Query: 181  YAKIIGRVMYLMNHTRPNIAYAVSRLSRYTHNPSRYHWDALRHLLRCLKGTINYSLHFNK 240
            YAKIIG VMYLMN+TRP+IAYAVSRLSRYTHNP+RYHWDALRHLLR LKGTI+Y LHF K
Sbjct: 1124 YAKIIGSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFKK 1183

Query: 241  FPSVLEGYCDANWVTDNDE----------------------------------------- 300
            FP+VLEGYCDANWVTDNDE                                         
Sbjct: 1184 FPAVLEGYCDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELA 1243

Query: 301  ------------------------------AAISIAKNSVYNGKRRHIRLRHGVVKHLLK 320
                                          AAI  AKNSVYNGK RH+RLRH VVK LLK
Sbjct: 1244 GQEAEWIKNLLGDVPLWGTSVPVSIQCDSQAAICTAKNSVYNGKSRHVRLRHAVVKQLLK 1303

[Close]

BLAST of CSPI02G11060 vs. NCBI nr
Match: KAD6453934.1 (hypothetical protein E3N88_08640 [Mikania micrantha])

HSP 1 Score: 391.7 bits (1005), Expect = 5.9e-105
Identity = 213/400 (53.25%), Postives = 253/400 (63.25%), Query Frame = 0


Query: 1   MDVKIAFLNGDLGEEIYMAQPEGFKFSGQENK-------------APKQWYEKFNDTLIN 60
           MDVK AFLNGDL EEIYM QPEGF  SG E+K             APK+WYEKF+ TL  
Sbjct: 295 MDVKTAFLNGDLDEEIYMLQPEGFVVSGLESKVCKLRKSLYGLKQAPKKWYEKFDRTLKQ 354

Query: 61  NGFKVNSSDTCVYSKMSGAECILICLYVDDMLIFGTNLDLIKDTKLFLSSHFEMKDLGEA 120
           +G+ VN+SD+CVYSK S    +LICLYVDDMLIFG ++  I  TK FLSS FEMKDLGEA
Sbjct: 355 DGYIVNNSDSCVYSKRSKTGYVLICLYVDDMLIFGADMHDINQTKAFLSSKFEMKDLGEA 414

Query: 121 DIILGVKIEKNENDLSLSQSHYNEILLKKFDSFDVSLVRTPYDVSKYLKKNKGESVSKPK 180
           D+ILGVKI++  N +SL QSHY E +LKKFD F+++ V+TPYD S  LKKN  ESVS+ +
Sbjct: 415 DVILGVKIKRTWNGISLCQSHYIEQMLKKFDCFELNPVKTPYDPSILLKKNNHESVSQSE 474

Query: 181 YAKIIGRVMYLMNHTRPNIAYAVSRLSRYTHNPSRYHWDALRHLLRCLKGTINYSLHFNK 240
           YAKIIG VM+LMN+TRP+IAY VSRLSRYTHNPS+ HW A+  L+R L+GT+   LH+NK
Sbjct: 475 YAKIIGSVMFLMNYTRPDIAYTVSRLSRYTHNPSKEHWSAIHRLMRYLRGTMELCLHYNK 534

Query: 241 FPSVLEGYCDANWVTDNDE----------------------------------------- 300
           FP+VLEGYCDANWVTDNDE                                         
Sbjct: 535 FPAVLEGYCDANWVTDNDEVSSTSGYVFIMGGGAISWKSSKQTCIARSTMESEFIALELA 594

Query: 301 -------------------------------AAISIAKNSVYNGKRRHIRLRHGVVKHLL 316
                                          AAIS+AKN VYNGK+RHIRLRH  VKH+L
Sbjct: 595 GQEAEWLRGLLSDIPQWGRNPLPIPLHCDSKAAISVAKNDVYNGKKRHIRLRHSSVKHML 654

[Close]

BLAST of CSPI02G11060 vs. NCBI nr
Match: KAG7592238.1 (Ribonuclease H-like superfamily [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 365.9 bits (938), Expect = 3.5e-97
Identity = 196/403 (48.64%), Postives = 251/403 (62.28%), Query Frame = 0


Query: 1    MDVKIAFLNGDLGEEIYMAQPEGFKFSGQENK-------------APKQWYEKFNDTLIN 60
            MDVK AFLNGDL EEIYM QPEGF   GQENK             APKQW+EKF++TL+ 
Sbjct: 916  MDVKTAFLNGDLHEEIYMMQPEGFIIEGQENKVCKLIKSLYGLKQAPKQWFEKFSNTLLE 975

Query: 61   NGFKVNSSDTCVYSKMSGAECILICLYVDDMLIFGTNLDLIKDTKLFLSSHFEMKDLGEA 120
            NGF  N  DTCV+SK+     ++ICLYVDDMLI GT+L+++ DTK+FLSS F+MKDLGEA
Sbjct: 976  NGFVSNEGDTCVFSKVHEHGYVIICLYVDDMLILGTSLEIVCDTKVFLSSKFDMKDLGEA 1035

Query: 121  DIILGVKIEKNENDLSLSQSHYNEILLKKFDSFDVSLVRTPYDVSKYLKKNKGESVSKPK 180
            D+ILG+K+ K ++  SL+QSHY E +LKKF  +D    ++PYD S +L +N+GESV++ +
Sbjct: 1036 DVILGIKVVKTDSGFSLNQSHYIEKILKKFGYWDEPSAKSPYDSSLHLCQNRGESVNQSE 1095

Query: 181  YAKIIGRVMYLMNHTRPNIAYAVSRLSRYTHNPSRYHWDALRHLLRCLKGTINYSLHFNK 240
            YAK+IG VMYLMN TRP+IAY VSRLSRYTHNP   HW AL  L+R LKGTI+++L ++ 
Sbjct: 1096 YAKVIGSVMYLMNCTRPDIAYVVSRLSRYTHNPGSNHWSALNRLMRYLKGTIDWNLCYSG 1155

Query: 241  FPSVLEGYCDANWVTDNDE----------------------------------------- 300
               VLE YCDANW +DNDE                                         
Sbjct: 1156 TSCVLEAYCDANWSSDNDEVNSTSGFVFTLAGGAIAWKSTKQTCIARSTMESELIALELA 1215

Query: 301  -------------------------------AAISIAKNSVYNGKRRHIRLRHGVVKHLL 319
                                           AAI++A N++YNGK+RHIR+RH V++ L+
Sbjct: 1216 GQEAEWLRNLLADFPMMGRPCPSVSMRCDSQAAIAVAMNALYNGKKRHIRMRHKVIRSLI 1275

[Close]

BLAST of CSPI02G11060 vs. NCBI nr
Match: KAG7551885.1 (Ribonuclease H-like superfamily [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 365.2 bits (936), Expect = 5.9e-97
Identity = 196/401 (48.88%), Postives = 250/401 (62.34%), Query Frame = 0


Query: 1    MDVKIAFLNGDLGEEIYMAQPEGFKFSGQENK-------------APKQWYEKFNDTLIN 60
            MDVK AFLNGDL EEIYM QPEGF   GQENK             APKQW+EKF++TL+ 
Sbjct: 916  MDVKTAFLNGDLHEEIYMMQPEGFIIEGQENKVCKLIKSLYGLKQAPKQWFEKFSNTLLE 975

Query: 61   NGFKVNSSDTCVYSKMSGAECILICLYVDDMLIFGTNLDLIKDTKLFLSSHFEMKDLGEA 120
            NGF  N  DTCV+SK+     ++ICLYVDDMLI GT+L+++ DTK+FLSS F+MKDLGEA
Sbjct: 976  NGFVSNEGDTCVFSKVHEHGYVIICLYVDDMLILGTSLEIVCDTKVFLSSKFDMKDLGEA 1035

Query: 121  DIILGVKIEKNENDLSLSQSHYNEILLKKFDSFDVSLVRTPYDVSKYLKKNKGESVSKPK 180
            D+ILG+K+ K ++  SL+QSHY E +LKKF  +D    ++PYD S +L +N+GESV++ +
Sbjct: 1036 DVILGIKVVKTDSGFSLNQSHYIEKILKKFGYWDEPSAKSPYDSSLHLCQNRGESVNQSE 1095

Query: 181  YAKIIGRVMYLMNHTRPNIAYAVSRLSRYTHNPSRYHWDALRHLLRCLKGTINYSLHFNK 240
            YAK+IG VMYLMN TRP+IAY VSRLSRYTHNP   HW AL  L+R LKGTI+++L ++ 
Sbjct: 1096 YAKVIGSVMYLMNCTRPDIAYVVSRLSRYTHNPGSNHWSALNRLMRYLKGTIDWNLCYSG 1155

Query: 241  FPSVLEGYCDANWVTDNDE----------------------------------------- 300
               VLE YCDANW +DNDE                                         
Sbjct: 1156 TSCVLEAYCDANWSSDNDEVNSTSGFVFTLAGGAIAWKSTKQTCIARSTMESELIALELA 1215

Query: 301  -------------------------------AAISIAKNSVYNGKRRHIRLRHGVVKHLL 317
                                           AAI++A N++YNGK+RHIR+RH V++ L+
Sbjct: 1216 GQEAEWLRNLLADFPMMGRPCPSVSMRCDSQAAIAVAMNALYNGKKRHIRMRHKVIRSLI 1275

[Close]

BLAST of CSPI02G11060 vs. NCBI nr
Match: KAG7571733.1 (Integrase catalytic core [Arabidopsis suecica])

HSP 1 Score: 359.8 bits (922), Expect = 2.5e-95
Identity = 195/403 (48.39%), Postives = 249/403 (61.79%), Query Frame = 0


Query: 1    MDVKIAFLNGDLGEEIYMAQPEGFKFSGQENK-------------APKQWYEKFNDTLIN 60
            MDVK AFLNGDL EEIYM QPEGF   GQENK             APKQW+EKF++TL+ 
Sbjct: 885  MDVKTAFLNGDLHEEIYMMQPEGFIIEGQENKVCKLIKSLYGLKQAPKQWFEKFSNTLLE 944

Query: 61   NGFKVNSSDTCVYSKMSGAECILICLYVDDMLIFGTNLDLIKDTKLFLSSHFEMKDLGEA 120
            NGF  N  DTCV+SK+     ++ICLYVDDMLI GT+L+++ DTK+FLSS F+MKDLGEA
Sbjct: 945  NGFVSNEGDTCVFSKVHEHGYVIICLYVDDMLILGTSLEIVCDTKVFLSSKFDMKDLGEA 1004

Query: 121  DIILGVKIEKNENDLSLSQSHYNEILLKKFDSFDVSLVRTPYDVSKYLKKNKGESVSKPK 180
            D+ILG+K+ K ++  SL+QSHY E +LKKF  +D    ++PYD S +L +N+GESV++ +
Sbjct: 1005 DVILGIKVVKTDSGFSLNQSHYIEKILKKFGYWDEPSAKSPYDSSLHLCQNRGESVNQSE 1064

Query: 181  YAKIIGRVMYLMNHTRPNIAYAVSRLSRYTHNPSRYHWDALRHLLRCLKGTINYSLHFNK 240
            YAK+IG VMYLMN TRP+IAYAVSRLSRYTHNP   HW AL  L+R LKGTI+++L ++ 
Sbjct: 1065 YAKVIGSVMYLMNCTRPDIAYAVSRLSRYTHNPGSNHWSALNRLMRYLKGTIDWNLCYSG 1124

Query: 241  FPSVLEGYCDANWVTDNDE----------------------------------------- 300
               VLE YCDANW +DNDE                                         
Sbjct: 1125 TSCVLEAYCDANWSSDNDEVNSTSGFVFTLAGGAIAWKSTKQTCIARSTMESELIALELA 1184

Query: 301  -------------------------------AAISIAKNSVYNGKRRHIRLRHGVVKHLL 319
                                           AAI++A N++YNGK+RHIR+RH V++ L+
Sbjct: 1185 GQEAEWLRNLLADFPMMGRPCPSVSMRCDSQAAIAVAMNALYNGKKRHIRMRHKVIRSLI 1244

[Close]

BLAST of CSPI02G11060 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 119.0 bits (297), Expect = 6.9e-27
Identity = 79/264 (29.92%), Postives = 136/264 (51.52%), Query Frame = 0


Query: 1   MDVKIAFLNGDLGEEIYMAQPEGFKFSGQEN-----------------KAPKQWYEKFND 60
           +D+  AFLNGDL EEIYM  P G+     ++                 +A +QW+ KF+ 
Sbjct: 193 LDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSV 252

Query: 61  TLINNGFKVNSSDTCVYSKMSGAECILICLYVDDMLIFGTNLDLIKDTKLFLSSHFEMKD 120
           TLI  GF  + SD   + K++    + + +YVDD++I   N   + + K  L S F+++D
Sbjct: 253 TLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRD 312

Query: 121 LGEADIILGVKIEKNENDLSLSQSHYNEILLKKFDSFDVSLVRTPYDVS-KYLKKNKGES 180
           LG     LG++I ++   +++ Q  Y   LL +           P D S  +   + G+ 
Sbjct: 313 LGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDF 372

Query: 181 VSKPKYAKIIGRVMYLMNHTRPNIAYAVSRLSRYTHNPSRYHWDALRHLLRCLKGTINYS 240
           V    Y ++IGR+MYL   TR +I++AV++LS+++  P   H  A+  +L  +KGT+   
Sbjct: 373 VDAKAYRRLIGRLMYL-QITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQG 432

Query: 241 LHFNKFPSV-LEGYCDANWVTDND 246
           L ++    + L+ + DA++ +  D
Sbjct: 433 LFYSSQAEMQLQVFSDASFQSCKD 455

[Close]

BLAST of CSPI02G11060 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 96.3 bits (238), Expect = 4.8e-20
Identity = 61/175 (34.86%), Postives = 98/175 (56.00%), Query Frame = 0


Query: 71  ICLYVDDMLIFGTNLDLIKDTKLFLSSHFEMKDLGEADIILGVKIEKNENDLSLSQSHYN 130
           + LYVDD+L+ G++  L+      LSS F MKDLG     LG++I+ + + L LSQ+ Y 
Sbjct: 3   LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62

Query: 131 EILLKKFDSFDVSLVRTPYDVSKYLKKNKGESVSK----PKYAKIIGRVMYLMNHTRPNI 190
           E +L      D   + TP      LK N   S +K      +  I+G + YL   TRP+I
Sbjct: 63  EQILNNAGMLDCKPMSTPLP----LKLNSSVSTAKYPDPSDFRSIVGALQYL-TLTRPDI 122

Query: 191 AYAVSRLSRYTHNPSRYHWDALRHLLRCLKGTINYSLHFNKFPSV-LEGYCDANW 241
           +YAV+ + +  H P+   +D L+ +LR +KGTI + L+ +K   + ++ +CD++W
Sbjct: 123 SYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDW 172

The following BLAST results are available for this feature:

BLAST of CSPI02G11060 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	3.0e-43	39.44	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	4.4e-34	34.48	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	3.7e-33	34.48	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P04146	1.4e-32	27.68	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P25600	5.9e-23	31.37	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of CSPI02G11060 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C5T2	1.2e-140	66.50	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A2N9EQT1	2.6e-106	53.00	Integrase catalytic domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB...	[more]
A0A2N9H4B0	2.6e-106	53.00	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37208 PE=4 SV=1	[more]
A0A5N6PGV2	2.9e-105	53.25	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Mikania micran...	[more]
A0A151TB60	3.5e-95	47.25	Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanu...	[more]

BLAST of CSPI02G11060 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK06518.1	2.5e-140	66.50	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAD6453934.1	5.9e-105	53.25	hypothetical protein E3N88_08640 [Mikania micrantha]	[more]
KAG7592238.1	3.5e-97	48.64	Ribonuclease H-like superfamily [Arabidopsis thaliana x Arabidopsis arenosa]	[more]
KAG7551885.1	5.9e-97	48.88	Ribonuclease H-like superfamily [Arabidopsis thaliana x Arabidopsis arenosa]	[more]
KAG7571733.1	2.5e-95	48.39	Integrase catalytic core [Arabidopsis suecica]	[more]

BLAST of CSPI02G11060 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	6.9e-27	29.92	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	4.8e-20	34.86	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..148 e-value: 3.9E-31 score: 108.5
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 1..223
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 208..302 e-value: 1.82389E-16 score: 72.8861
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..242

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G11060.1	CSPI02G11060.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding