CSPI02G08290 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G08290
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	CLAVATA3/ESR (CLE)-related protein 45
Location	Chr2: 7780877 .. 7781770 (-)
RNA-Seq Expression	CSPI02G08290
Synteny	CSPI02G08290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCTTCTCAGAGGCATTGTTCCAATAAACACCTTTATTCATCCTTATAAGATTCTTGGATAGCAGCCTTAGATTTGCAGGCTTATGATTTGAATGAATCTAAAATCGGTCTAGATGTTTGAGGGCCCAACTCTGCTTTATGCTTTAAAGTCACTTCCAAAACCAATGACAGATAAATAACAGCCTTGTGTGTCTACTACAGGAATCAAACTACCACAAAAACAAAACAGAATTAAGAGAAAAGAAAAAAAAAAAAAGAGGGAGAAAAAAAACCAACATATCTATCCTCTTTCTCCCTCTTTTTGCTTCATTGTAGAAGCCATGGGTTTTAGTATACACAGAGTACTTATTGTCCTTCTCATGTGTGTTGTTGCACTTTTAGCTGTTAAACCAGATCAGGCCTGTGCTTTGAGAAGTATAGACCTTGCTCTAAGACCAAGCCGCCACATTCTTGTTGAAGACTCAACGATGGAGGAACTGAACATGAAAAGGAATTCACAACCACGAAACAACAAGTTCGATCCAAATCGATCAAGCAAAAGAAGGGTTCGGCGAGGATCGGATCCTATCCACAACAGGTCTTAGTTCATTTCTTTTGTTTGCTGAAGGAACCCACAAATTTGATATCAACAGAAGCAAGGAAACAGAGAAAGGTTCAGGCCACAGCAGAGGAAGAAACACCAGCAAGAATCTGGTTTCTCCAATGGTTGGTTGGTTGGTTTGATCATTTATCCCCATTACATAACGATTCCGTTTTTAGTTTTCTGTTTTTGAAAATTATGCTAGAATTTTCACAACTTCTTTAGTATATTTTGCACATTCCTTAAAAACACATTTGAATTCTAAGCCAAATTTAAAAACAAACCCATATATATAAAGAAAAAGTTTTGAAATT

mRNA sequence

GGCTTCTCAGAGGCATTGTTCCAATAAACACCTTTATTCATCCTTATAAGATTCTTGGATAGCAGCCTTAGATTTGCAGGCTTATGATTTGAATGAATCTAAAATCGGTCTAGATGTTTGAGGGCCCAACTCTGCTTTATGCTTTAAAGTCACTTCCAAAACCAATGACAGATAAATAACAGCCTTGTGTGTCTACTACAGGAATCAAACTACCACAAAAACAAAACAGAATTAAGAGAAAAGAAAAAAAAAAAAAGAGGGAGAAAAAAAACCAACATATCTATCCTCTTTCTCCCTCTTTTTGCTTCATTGTAGAAGCCATGGGTTTTAGTATACACAGAGTACTTATTGTCCTTCTCATGTGTGTTGTTGCACTTTTAGCTGTTAAACCAGATCAGGCCTGTGCTTTGAGAAGTATAGACCTTGCTCTAAGACCAAGCCGCCACATTCTTGTTGAAGACTCAACGATGGAGGAACTGAACATGAAAAGGAATTCACAACCACGAAACAACAAGTTCGATCCAAATCGATCAAGCAAAAGAAGGGTTCGGCGAGGATCGGATCCTATCCACAACAGGTCTTAGTTCATTTCTTTTGTTTGCTGAAGGAACCCACAAATTTGATATCAACAGAAGCAAGGAAACAGAGAAAGGTTCAGGCCACAGCAGAGGAAGAAACACCAGCAAGAATCTGGTTTCTCCAATGGTTGGTTGGTTGGTTTGATCATTTATCCCCATTACATAACGATTCCGTTTTTAGTTTTCTGTTTTTGAAAATTATGCTAGAATTTTCACAACTTCTTTAGTATATTTTGCACATTCCTTAAAAACACATTTGAATTCTAAGCCAAATTTAAAAACAAACCCATATATATAAAGAAAAAGTTTTGAAATT

Coding sequence (CDS)

ATGGGTTTTAGTATACACAGAGTACTTATTGTCCTTCTCATGTGTGTTGTTGCACTTTTAGCTGTTAAACCAGATCAGGCCTGTGCTTTGAGAAGTATAGACCTTGCTCTAAGACCAAGCCGCCACATTCTTGTTGAAGACTCAACGATGGAGGAACTGAACATGAAAAGGAATTCACAACCACGAAACAACAAGTTCGATCCAAATCGATCAAGCAAAAGAAGGGTTCGGCGAGGATCGGATCCTATCCACAACAGGTCTTAG

Protein sequence

MGFSIHRVLIVLLMCVVALLAVKPDQACALRSIDLALRPSRHILVEDSTMEELNMKRNSQPRNNKFDPNRSSKRRVRRGSDPIHNRS*

Homology

[Close]

BLAST of CSPI02G08290 vs. ExPASy TrEMBL
Match: A0A0A0LHH0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G101100 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 6.6e-36
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MGFSIHRVLIVLLMCVVALLAVKPDQACALRSIDLALRPSRHILVEDSTMEELNMKRNSQ 60
          MGFSIHRVLIVLLMCVVALLAVK DQACALRSIDLALRPSRHILVEDST+EELNMKRNSQ
Sbjct: 1  MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRHILVEDSTVEELNMKRNSQ 60

Query: 61 PRNNKFDPNRSSKRRVRRGSDPIHNRS 88
          PRNNKFDPNRSSKRRVRRGSDPIHNRS
Sbjct: 61 PRNNKFDPNRSSKRRVRRGSDPIHNRS 87

[Close]

BLAST of CSPI02G08290 vs. ExPASy TrEMBL
Match: A0A5A7SRV2 (CLAVATA3/ESR (CLE)-related protein 45 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1327G00220 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 1.3e-31
Identity = 80/87 (91.95%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 1  MGFSIHRVLIVLLMCVVALLAVKPDQACALRSIDLALRPSRHILVEDSTMEELNMKRNSQ 60
          M FSIHRVLIVLLMC VALLAVKP+QACALRSIDLALRPSRHILVEDS +EELNMKRNS 
Sbjct: 1  MVFSIHRVLIVLLMC-VALLAVKPEQACALRSIDLALRPSRHILVEDSRVEELNMKRNSL 60

Query: 61 PRNNKFDPNRSSKRRVRRGSDPIHNRS 88
          P+NNKFDPNRSSKRRVRRGSDPIHNRS
Sbjct: 61 PQNNKFDPNRSSKRRVRRGSDPIHNRS 86

[Close]

BLAST of CSPI02G08290 vs. ExPASy TrEMBL
Match: A0A067GTG0 (Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034426mg PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.6e-12
Identity = 50/96 (52.08%), Postives = 67/96 (69.79%), Query Frame = 0


Query: 1  MGFSIHRVLIVLLMCVVALLAVKPDQACALRSIDLALRPSRH---------ILVEDSTME 60
          M F   RVLI LL+C+  LL+V+PD+   LRSIDL LR ++H          +++++TM 
Sbjct: 1  MVFFARRVLI-LLICMGLLLSVQPDKVSGLRSIDLVLRQNQHNQGMVPQNQRILKETTMV 60

Query: 61 ELNMKRNSQPRNNKFDPNRSSKRRVRRGSDPIHNRS 88
           +N ++ S   +NKFDPN+SSKRRVRRGSDPIHNRS
Sbjct: 61 GMNAEKKSTKIHNKFDPNQSSKRRVRRGSDPIHNRS 95

[Close]

BLAST of CSPI02G08290 vs. ExPASy TrEMBL
Match: V4VH78 (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10033178mg PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 6.6e-12
Identity = 50/96 (52.08%), Postives = 67/96 (69.79%), Query Frame = 0


Query: 1  MGFSIHRVLIVLLMCVVALLAVKPDQACALRSIDLALRPSRH---------ILVEDSTME 60
          M F   RVLI LL+C+  LL+V+PD+   LRSIDL LR ++H          +++++TM 
Sbjct: 1  MVFFARRVLI-LLICMGLLLSVQPDKVSGLRSIDLVLRQNQHNQGMVPQNQRILKETTMV 60

Query: 61 ELNMKRNSQPRNNKFDPNRSSKRRVRRGSDPIHNRS 88
           +N ++ S   +NKFDPN+SSKRRVRRGSDPIHNRS
Sbjct: 61 GMNAEKKSTKIHNKFDPNQSSKRRVRRGSDPIHNRS 95

[Close]

BLAST of CSPI02G08290 vs. ExPASy TrEMBL
Match: A0A314ZMX4 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_07373 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 5.6e-11
Identity = 53/98 (54.08%), Postives = 62/98 (63.27%), Query Frame = 0


Query: 1  MGFSIHRVLIVLLMCVVALLAVKPDQACALRSIDLALR----------PSRHILVEDSTM 60
          M FS H V  VLL CV   L V+PD+  AL SI LALR          P     +E +TM
Sbjct: 1  MVFSSHGV-FVLLFCVGLFLVVQPDEVSALTSIGLALRENQGQYHGIVPRHQRTLEAATM 60

Query: 61 EELNM-KRNSQPRNNKFDPNRSSKRRVRRGSDPIHNRS 88
          EE++  K+NS   N+ FDPN+SSKRRVRRGSDPIHNRS
Sbjct: 61 EEMSTEKKNSTNTNSNFDPNQSSKRRVRRGSDPIHNRS 97

[Close]

BLAST of CSPI02G08290 vs. NCBI nr
Match: KGN61380.1 (hypothetical protein Csa_006322 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 1.4e-35
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MGFSIHRVLIVLLMCVVALLAVKPDQACALRSIDLALRPSRHILVEDSTMEELNMKRNSQ 60
          MGFSIHRVLIVLLMCVVALLAVK DQACALRSIDLALRPSRHILVEDST+EELNMKRNSQ
Sbjct: 1  MGFSIHRVLIVLLMCVVALLAVKTDQACALRSIDLALRPSRHILVEDSTVEELNMKRNSQ 60

Query: 61 PRNNKFDPNRSSKRRVRRGSDPIHNRS 88
          PRNNKFDPNRSSKRRVRRGSDPIHNRS
Sbjct: 61 PRNNKFDPNRSSKRRVRRGSDPIHNRS 87

[Close]

BLAST of CSPI02G08290 vs. NCBI nr
Match: KAA0032271.1 (CLAVATA3/ESR (CLE)-related protein 45 [Cucumis melo var. makuwa] >TYK17075.1 CLAVATA3/ESR (CLE)-related protein 45 [Cucumis melo var. makuwa])

HSP 1 Score: 145.2 bits (365), Expect = 2.7e-31
Identity = 80/87 (91.95%), Postives = 83/87 (95.40%), Query Frame = 0


Query: 1  MGFSIHRVLIVLLMCVVALLAVKPDQACALRSIDLALRPSRHILVEDSTMEELNMKRNSQ 60
          M FSIHRVLIVLLMC VALLAVKP+QACALRSIDLALRPSRHILVEDS +EELNMKRNS 
Sbjct: 1  MVFSIHRVLIVLLMC-VALLAVKPEQACALRSIDLALRPSRHILVEDSRVEELNMKRNSL 60

Query: 61 PRNNKFDPNRSSKRRVRRGSDPIHNRS 88
          P+NNKFDPNRSSKRRVRRGSDPIHNRS
Sbjct: 61 PQNNKFDPNRSSKRRVRRGSDPIHNRS 86

[Close]

BLAST of CSPI02G08290 vs. NCBI nr
Match: KAG7029950.1 (hypothetical protein SDJN02_08294, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 141.0 bits (354), Expect = 5.0e-30
Identity = 75/87 (86.21%), Postives = 82/87 (94.25%), Query Frame = 0


Query: 1  MGFSIHRVLIVLLMCVVALLAVKPDQACALRSIDLALRPSRHILVEDSTMEELNMKRNSQ 60
          M FSIHRVL+VLLMCVVALLAV+PDQACA+RSIDLALR SRHILVEDS +EE NMKRNS 
Sbjct: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACAVRSIDLALRSSRHILVEDSRVEEKNMKRNSL 60

Query: 61 PRNNKFDPNRSSKRRVRRGSDPIHNRS 88
          PRN+KFDPN+SSKRRVRRGSDPIHN+S
Sbjct: 61 PRNSKFDPNQSSKRRVRRGSDPIHNKS 87

[Close]

BLAST of CSPI02G08290 vs. NCBI nr
Match: KAG6598982.1 (hypothetical protein SDJN03_08760, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139.4 bits (350), Expect = 1.5e-29
Identity = 75/87 (86.21%), Postives = 81/87 (93.10%), Query Frame = 0


Query: 1  MGFSIHRVLIVLLMCVVALLAVKPDQACALRSIDLALRPSRHILVEDSTMEELNMKRNSQ 60
          M FSIHRVL+VLLMCVVALLAV+PDQACALRSIDLA R SRHILVEDS +EE NMKRNS 
Sbjct: 1  MVFSIHRVLVVLLMCVVALLAVQPDQACALRSIDLAPRSSRHILVEDSRVEEKNMKRNSL 60

Query: 61 PRNNKFDPNRSSKRRVRRGSDPIHNRS 88
          PRN+KFDPN+SSKRRVRRGSDPIHN+S
Sbjct: 61 PRNSKFDPNQSSKRRVRRGSDPIHNKS 87

[Close]

BLAST of CSPI02G08290 vs. NCBI nr
Match: KAG7036811.1 (hypothetical protein SDJN02_00431, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 111.7 bits (278), Expect = 3.3e-21
Identity = 66/87 (75.86%), Postives = 71/87 (81.61%), Query Frame = 0


Query: 1  MGFSIHRVLIVLLMCVVALLAVKPDQACALRSIDLALRPSRHILVEDSTMEELNMKRNSQ 60
          M FSIHRVL+VLLMCVVALLAVKP+QAC L S+DLALRP RH+L       E    RNS+
Sbjct: 1  MVFSIHRVLLVLLMCVVALLAVKPEQACGLTSMDLALRPIRHVL-------EDPRDRNSR 60

Query: 61 PRNNKFDPNRSSKRRVRRGSDPIHNRS 88
          PR NKFDPNRSSKRRVRRGSDPIHNRS
Sbjct: 61 PR-NKFDPNRSSKRRVRRGSDPIHNRS 79

The following BLAST results are available for this feature:

BLAST of CSPI02G08290 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI02G08290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHH0	6.6e-36	97.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G101100 PE=4 SV=1	[more]
A0A5A7SRV2	1.3e-31	91.95	CLAVATA3/ESR (CLE)-related protein 45 OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A067GTG0	6.6e-12	52.08	Uncharacterized protein OS=Citrus sinensis OX=2711 GN=CISIN_1g034426mg PE=4 SV=1	[more]
V4VH78	6.6e-12	52.08	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10033178mg PE=4 ...	[more]
A0A314ZMX4	5.6e-11	54.08	Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_073...	[more]

BLAST of CSPI02G08290 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61380.1	1.4e-35	97.70	hypothetical protein Csa_006322 [Cucumis sativus]	[more]
KAA0032271.1	2.7e-31	91.95	CLAVATA3/ESR (CLE)-related protein 45 [Cucumis melo var. makuwa] >TYK17075.1 CLA...	[more]
KAG7029950.1	5.0e-30	86.21	hypothetical protein SDJN02_08294, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6598982.1	1.5e-29	86.21	hypothetical protein SDJN03_08760, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7036811.1	3.3e-21	75.86	hypothetical protein SDJN02_00431, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CSPI02G08290 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 67..87
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..87
None	No IPR available	PANTHER	PTHR36726:SF4	CLAVATA3/ESR (CLE)-RELATED PROTEIN 45	coord: 1..87
IPR038821	CLE-related protein 45-like	PANTHER	PTHR36726	CLAVATA3/ESR (CLE)-RELATED PROTEIN 45	coord: 1..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G08290.1	CSPI02G08290.1	mRNA