CSPI02G08070 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G08070
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Unknown protein
Location	Chr2: 7419092 .. 7419372 (+)
RNA-Seq Expression	CSPI02G08070
Synteny	CSPI02G08070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CACCTATCGAGATTTGGCAAAGAAATTGAACTATGACAGCTGAGTCACGAAGAAAGGCAATGGAAATGCGTGCTTCCACGTCCACCGTTGTCTCACCTACATTCATTCGAAGAGAGATTTACAATGAATTACGAAGAAAAAGCCGCAAGGAGAGGTTTACACTGTTCGACTGCCACAAGAATGCATGCTCCGACGTCCAAACGAAAATTGAAGAAGGGCAATGCAAAGGCAACGTTCACTGTAGCCCCACCAAAGTAGAGGAGAATATGGCACCTGAGTAG

mRNA sequence

CACCTATCGAGATTTGGCAAAGAAATTGAACTATGACAGCTGAGTCACGAAGAAAGGCAATGGAAATGCGTGCTTCCACGTCCACCGTTGTCTCACCTACATTCATTCGAAGAGAGATTTACAATGAATTACGAAGAAAAAGCCGCAAGGAGAGGTTTACACTGTTCGACTGCCACAAGAATGCATGCTCCGACGTCCAAACGAAAATTGAAGAAGGGCAATGCAAAGGCAACGTTCACTGTAGCCCCACCAAAGTAGAGGAGAATATGGCACCTGAGTAG

Coding sequence (CDS)

ATGACAGCTGAGTCACGAAGAAAGGCAATGGAAATGCGTGCTTCCACGTCCACCGTTGTCTCACCTACATTCATTCGAAGAGAGATTTACAATGAATTACGAAGAAAAAGCCGCAAGGAGAGGTTTACACTGTTCGACTGCCACAAGAATGCATGCTCCGACGTCCAAACGAAAATTGAAGAAGGGCAATGCAAAGGCAACGTTCACTGTAGCCCCACCAAAGTAGAGGAGAATATGGCACCTGAGTAG

Protein sequence

MTAESRRKAMEMRASTSTVVSPTFIRREIYNELRRKSRKERFTLFDCHKNACSDVQTKIEEGQCKGNVHCSPTKVEENMAPE*

Homology

[Close]

BLAST of CSPI02G08070 vs. ExPASy TrEMBL
Match: A0A0A0LJU9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G095920 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.4e-35
Identity = 77/80 (96.25%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1  MTAESRRKAMEMRASTSTVVSPTFIRREIYNELRRKSRKERFTLFDCHKNACSDVQTKIE 60
          MTAESRRKA+EMRASTST+VSPTFIRREIYNELRRK RKERFTLFDCHKNACSDVQTKIE
Sbjct: 1  MTAESRRKAIEMRASTSTIVSPTFIRREIYNELRRKRRKERFTLFDCHKNACSDVQTKIE 60

Query: 61 EGQCKGNVHCSPTKVEENMA 81
          EGQCKGNVHCSPTKVEENMA
Sbjct: 61 EGQCKGNVHCSPTKVEENMA 80

[Close]

BLAST of CSPI02G08070 vs. NCBI nr
Match: KGN61354.1 (hypothetical protein Csa_006508 [Cucumis sativus])

HSP 1 Score: 158.3 bits (399), Expect = 2.9e-35
Identity = 77/80 (96.25%), Postives = 79/80 (98.75%), Query Frame = 0


Query: 1  MTAESRRKAMEMRASTSTVVSPTFIRREIYNELRRKSRKERFTLFDCHKNACSDVQTKIE 60
          MTAESRRKA+EMRASTST+VSPTFIRREIYNELRRK RKERFTLFDCHKNACSDVQTKIE
Sbjct: 1  MTAESRRKAIEMRASTSTIVSPTFIRREIYNELRRKRRKERFTLFDCHKNACSDVQTKIE 60

Query: 61 EGQCKGNVHCSPTKVEENMA 81
          EGQCKGNVHCSPTKVEENMA
Sbjct: 61 EGQCKGNVHCSPTKVEENMA 80

The following BLAST results are available for this feature:

BLAST of CSPI02G08070 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI02G08070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJU9	1.4e-35	96.25	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G095920 PE=4 SV=1	[more]

BLAST of CSPI02G08070 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61354.1	2.9e-35	96.25	hypothetical protein Csa_006508 [Cucumis sativus]	[more]

BLAST of CSPI02G08070 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G08070.1	CSPI02G08070.1	mRNA