CSPI02G07570 (gene) Cucumber (PI 183967) v1

Overview


Name	CSPI02G07570
Type	gene
Organism	Cucumis sativus var. hardwickii cv. PI 183967 (Cucumber (PI 183967) v1)
Description	Defensin-like protein
Location	Chr2: 6530501 .. 6531045 (-)
RNA-Seq Expression	CSPI02G07570
Synteny	CSPI02G07570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATCTGTCTCCTTCTCAGCCATTCTTCTTGCACTTTTACTCGTTTTCAGTGGTACTTCCCTCTTTAGCTTGTATTATTTATTTTAATTTCATCATCACATGCTCGCCTTCTCTTTTGATTAATTTCTTTTCGCCAGTTTTGTTTAATTTTTTTAAGAATTCTACCCGATGTAAGTAAGTGATATTGTACGTAGTAGTTTCAAGTTGTGTTATTTTACCACAAAGAAAACAAGAAGATTCAAATACTTCATAGAGTTTATGGTTTGTTTACAAGATTATTGAGGTTGGGTTTATGGATTTTGATGAATGCAGGGGAAACTATCATGATGAGAAGTGTTGAAGGTGAAGGGCTATGCGAGAAGGCTTTGCATGGAGGAGGTTGCAAGGATGCCGAGTGTGCGAGTGGGTGCAAACACGTATTTGGAGCAGGTGCAATGGGATTGTGCTTTTTCTTTCGAACCCCAAGTGATACTTGTCTTTGCCGCTATCCTTGTTGATCTTTACAACTTCTTACTATCGAAATAAAATGGAATAATTAAGGG

mRNA sequence

ATGAAATCTGTCTCCTTCTCAGCCATTCTTCTTGCACTTTTACTCGTTTTCAGTGGGGAAACTATCATGATGAGAAGTGTTGAAGGTGAAGGGCTATGCGAGAAGGCTTTGCATGGAGGAGGTTGCAAGGATGCCGAGTGTGCGAGTGGGTGCAAACACGTATTTGGAGCAGGTGCAATGGGATTGTGCTTTTTCTTTCGAACCCCAAGTGATACTTGTCTTTGCCGCTATCCTTGTTGATCTTTACAACTTCTTACTATCGAAATAAAATGGAATAATTAAGGG

Coding sequence (CDS)

ATGAAATCTGTCTCCTTCTCAGCCATTCTTCTTGCACTTTTACTCGTTTTCAGTGGGGAAACTATCATGATGAGAAGTGTTGAAGGTGAAGGGCTATGCGAGAAGGCTTTGCATGGAGGAGGTTGCAAGGATGCCGAGTGTGCGAGTGGGTGCAAACACGTATTTGGAGCAGGTGCAATGGGATTGTGCTTTTTCTTTCGAACCCCAAGTGATACTTGTCTTTGCCGCTATCCTTGTTGA

Protein sequence

MKSVSFSAILLALLLVFSGETIMMRSVEGEGLCEKALHGGGCKDAECASGCKHVFGAGAMGLCFFFRTPSDTCLCRYPC*

Homology

[Close]

BLAST of CSPI02G07570 vs. ExPASy TrEMBL
Match: A0A0A0LH75 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G077550 PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 4.9e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MKSVSFSAILLALLLVFSGETIMMRSVEGEGLCEKALHGGGCKDAECASGCKHVFGAGAM 60
          MKSVSFSAILLALLLVFSGETIMMRSVEGEGLCEKALHGGGCKDAECASGCKHVFGAGAM
Sbjct: 1  MKSVSFSAILLALLLVFSGETIMMRSVEGEGLCEKALHGGGCKDAECASGCKHVFGAGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 80
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of CSPI02G07570 vs. ExPASy TrEMBL
Match: A0A5A7V7B1 (Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold3861G00090 PE=3 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 5.8e-31
Identity = 71/80 (88.75%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 1  MKSVSFSAILLALLLVFSGETIMMRSVEG-EGLCEKALHGGGCKDAECASGCKHVFGAGA 60
          MKSVSFSAILLALLL+FSGET MM+SVEG  GLCEKALHGGGCKDAEC SGCK +FG GA
Sbjct: 1  MKSVSFSAILLALLLIFSGET-MMKSVEGVGGLCEKALHGGGCKDAECMSGCKALFGKGA 60

Query: 61 MGLCFFFRTPSDTCLCRYPC 80
          MGLCFFFRTPSDTCLCRYPC
Sbjct: 61 MGLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of CSPI02G07570 vs. ExPASy TrEMBL
Match: A0A5A7V978 (Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold244G00660 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 7.6e-31
Identity = 70/80 (87.50%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 1  MKSVSFSAILLALLLVFSGETIMMRSVEG-EGLCEKALHGGGCKDAECASGCKHVFGAGA 60
          MKS+SFSAILLALLL+FSGET MM+SVEG  GLCEKALHGGGCKDAEC SGCK +FG GA
Sbjct: 1  MKSISFSAILLALLLIFSGET-MMKSVEGVGGLCEKALHGGGCKDAECISGCKALFGKGA 60

Query: 61 MGLCFFFRTPSDTCLCRYPC 80
          MGLCFFFRTPSDTCLCRYPC
Sbjct: 61 MGLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of CSPI02G07570 vs. ExPASy TrEMBL
Match: A0A5A7TAP6 (Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35G00020 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.9e-30
Identity = 70/80 (87.50%), Postives = 73/80 (91.25%), Query Frame = 0


Query: 1  MKSVSFSAILLALLLVFSGETIMMRSVEG-EGLCEKALHGGGCKDAECASGCKHVFGAGA 60
          MKSVS SAILLALLL+FSGET MM+SVEG  GLCEKALHGGGCKDAEC SGCK +FG GA
Sbjct: 1  MKSVSLSAILLALLLIFSGET-MMKSVEGVGGLCEKALHGGGCKDAECMSGCKALFGKGA 60

Query: 61 MGLCFFFRTPSDTCLCRYPC 80
          MGLCFFFRTPSDTCLCRYPC
Sbjct: 61 MGLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of CSPI02G07570 vs. ExPASy TrEMBL
Match: A0A5A7T9W7 (Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2379G00030 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.9e-30
Identity = 69/80 (86.25%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 1  MKSVSFSAILLALLLVFSGETIMMRSVEG-EGLCEKALHGGGCKDAECASGCKHVFGAGA 60
          MKSVSFSAILLALLL+F+GET MM+SVEG  GLC+KALHGGGCKDAEC SGCK +FG GA
Sbjct: 1  MKSVSFSAILLALLLIFNGET-MMKSVEGVGGLCQKALHGGGCKDAECMSGCKALFGKGA 60

Query: 61 MGLCFFFRTPSDTCLCRYPC 80
          MGLCFFFRTPSDTCLCRYPC
Sbjct: 61 MGLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of CSPI02G07570 vs. NCBI nr
Match: KGN61300.1 (hypothetical protein Csa_006301 [Cucumis sativus])

HSP 1 Score: 166.4 bits (420), Expect = 1.0e-37
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0


Query: 1  MKSVSFSAILLALLLVFSGETIMMRSVEGEGLCEKALHGGGCKDAECASGCKHVFGAGAM 60
          MKSVSFSAILLALLLVFSGETIMMRSVEGEGLCEKALHGGGCKDAECASGCKHVFGAGAM
Sbjct: 1  MKSVSFSAILLALLLVFSGETIMMRSVEGEGLCEKALHGGGCKDAECASGCKHVFGAGAM 60

Query: 61 GLCFFFRTPSDTCLCRYPC 80
          GLCFFFRTPSDTCLCRYPC
Sbjct: 61 GLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of CSPI02G07570 vs. NCBI nr
Match: KAA0061621.1 (Defensin-like protein [Cucumis melo var. makuwa] >TYK19754.1 Defensin-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 142.9 bits (359), Expect = 1.2e-30
Identity = 71/80 (88.75%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 1  MKSVSFSAILLALLLVFSGETIMMRSVEG-EGLCEKALHGGGCKDAECASGCKHVFGAGA 60
          MKSVSFSAILLALLL+FSGET MM+SVEG  GLCEKALHGGGCKDAEC SGCK +FG GA
Sbjct: 1  MKSVSFSAILLALLLIFSGET-MMKSVEGVGGLCEKALHGGGCKDAECMSGCKALFGKGA 60

Query: 61 MGLCFFFRTPSDTCLCRYPC 80
          MGLCFFFRTPSDTCLCRYPC
Sbjct: 61 MGLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of CSPI02G07570 vs. NCBI nr
Match: KAA0062251.1 (Defensin-like protein [Cucumis melo var. makuwa] >TYK27293.1 Defensin-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 142.5 bits (358), Expect = 1.6e-30
Identity = 70/80 (87.50%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 1  MKSVSFSAILLALLLVFSGETIMMRSVEG-EGLCEKALHGGGCKDAECASGCKHVFGAGA 60
          MKS+SFSAILLALLL+FSGET MM+SVEG  GLCEKALHGGGCKDAEC SGCK +FG GA
Sbjct: 1  MKSISFSAILLALLLIFSGET-MMKSVEGVGGLCEKALHGGGCKDAECISGCKALFGKGA 60

Query: 61 MGLCFFFRTPSDTCLCRYPC 80
          MGLCFFFRTPSDTCLCRYPC
Sbjct: 61 MGLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of CSPI02G07570 vs. NCBI nr
Match: TYK19753.1 (Defensin-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 140.6 bits (353), Expect = 6.0e-30
Identity = 70/80 (87.50%), Postives = 73/80 (91.25%), Query Frame = 0


Query: 1  MKSVSFSAILLALLLVFSGETIMMRSVEG-EGLCEKALHGGGCKDAECASGCKHVFGAGA 60
          MKSVSFSAILLALLL+FSGET M +SVEG  GLCEKALHGGGCKDAEC SGCK +FG GA
Sbjct: 1  MKSVSFSAILLALLLIFSGET-MTKSVEGVGGLCEKALHGGGCKDAECISGCKALFGKGA 60

Query: 61 MGLCFFFRTPSDTCLCRYPC 80
          MGLCFFFRTPSDTCLCRYPC
Sbjct: 61 MGLCFFFRTPSDTCLCRYPC 79

[Close]

BLAST of CSPI02G07570 vs. NCBI nr
Match: KAA0040274.1 (Defensin-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 140.6 bits (353), Expect = 6.0e-30
Identity = 69/80 (86.25%), Postives = 74/80 (92.50%), Query Frame = 0


Query: 1  MKSVSFSAILLALLLVFSGETIMMRSVEG-EGLCEKALHGGGCKDAECASGCKHVFGAGA 60
          MKSVSFSAILLALLL+F+GET MM+SVEG  GLC+KALHGGGCKDAEC SGCK +FG GA
Sbjct: 1  MKSVSFSAILLALLLIFNGET-MMKSVEGVGGLCQKALHGGGCKDAECMSGCKALFGKGA 60

Query: 61 MGLCFFFRTPSDTCLCRYPC 80
          MGLCFFFRTPSDTCLCRYPC
Sbjct: 61 MGLCFFFRTPSDTCLCRYPC 79

The following BLAST results are available for this feature:

BLAST of CSPI02G07570 vs.


Match Name	E-value	Identity	Description

BLAST of CSPI02G07570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LH75	4.9e-38	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G077550 PE=3 SV=1	[more]
A0A5A7V7B1	5.8e-31	88.75	Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38...	[more]
A0A5A7V978	7.6e-31	87.50	Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24...	[more]
A0A5A7TAP6	2.9e-30	87.50	Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35...	[more]
A0A5A7T9W7	2.9e-30	86.25	Defensin-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold23...	[more]

BLAST of CSPI02G07570 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61300.1	1.0e-37	100.00	hypothetical protein Csa_006301 [Cucumis sativus]	[more]
KAA0061621.1	1.2e-30	88.75	Defensin-like protein [Cucumis melo var. makuwa] >TYK19754.1 Defensin-like prote...	[more]
KAA0062251.1	1.6e-30	87.50	Defensin-like protein [Cucumis melo var. makuwa] >TYK27293.1 Defensin-like prote...	[more]
TYK19753.1	6.0e-30	87.50	Defensin-like protein [Cucumis melo var. makuwa]	[more]
KAA0040274.1	6.0e-30	86.25	Defensin-like protein [Cucumis melo var. makuwa]	[more]

BLAST of CSPI02G07570 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (PI 183967) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010851	Defensin-like protein	PFAM	PF07333	SLR1-BP	coord: 31..79 e-value: 1.3E-7 score: 32.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI02G07570.1	CSPI02G07570.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0050832	defense response to fungus
biological_process	GO:0031640	killing of cells of other organism